MD04G1030600.v1.1

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
3434780 .. 3442634
7855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1030600.v1.1.491

Sequence Viewer

Length: 1623 bp
ATGGCAATGGCAATGGCGTCGGGTCTCCTCCGCCTAGTGTTTCTGTTATCTCTGATTGCTCTTTCTTTGGCCCGTGGTGAAAAGGACATGGTTTTGGATGTGGATTCCACCCCCGACACTCCTTCCTGCAACAACCCTTACCTAATGGCAAAGGTTAAGAATTGGGTTAATGGCCATGAAGGAGAAACTATTGAAGGGGCAGGTGCAAAGTTTGGGGCTTTATTGCCTTCCAAAGAAGAAAAAGCCGTCAAATTGCCCGTTGTTATCTCGAATCCTTTAAATGGTTGTTCAGCGTCATCTTCGAAGTTATCTGGAGCTATTGCCTTGTCCACGCGTGGTGATTGTGACTTCTCCGTAAAGGCAAAAGTTGCACAGTCAGGAGGTGCTAAGGCGCTAGTGGTGATAAATAATGATGAAGAGCTTGCCAAGATGGCTTGTCCTGATAATAGTACTTCTTTGAATATTTCAATTTTTGTCGTAATGGTTCCAAAGTCAGATGGAGAAGCACTCAAGAAATCTATTGAAGATGGAAAGAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCAGTGGTGGACTACTCAGTTGTGTTCCTGTGGCTGATGGCTGTTGGAACAATAATAGTTGCCTCATTTTGGTCAAAGATTACTGCTCCTGATAAGTCTGATGAGAATTATAATGAACTAGCAGAAAAGGAATCTAATACTGGAACAGCCAAAGATGATTCTGAGGACGAAGTCATGAATCTTAGTGTGGCAGGCGCTGTGTGTTTCGTCATAACAGCATCCACTTTTCTGTTGCTACTATATTTCTTTATGTCTACTTGGTTTATCTGGGTGCTGATTGTACTTTTCTGCATTGGTGGTATTGAGGGAATGCATAATTGTGTTCTGAGCCTGATTTTGAGAAAATGGAGAAGTGGTGGGCAGAAGACGATAACTTTGCCTCTTCTGGATGAGGTTTCTATTCTCTCGCTTGTTGTATTGGCTTTCTGTGCGGCATTTGCAGTTTTCTGGGTTGTTACCCGGCGGGCGTCATATTCATGGATTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACGGTCTTGCAAATTGCTCGATTGCCTAACATAAAGGTTGCTACCGTACTACTTTGTTGTGCATTTGTCTATGACATCTTTTGGGTATTCCTGTCACCCTTAATATTCAAAGATAGCGTCATGGTTACGGTTGCTAAAGGTGACGGCAGTGGTGAAGCCCTACCAATGCTTTTGAGAATCCCTCGCTTTTTTGACCCCTGGGGTGGTGTGAATATGATTGGCTTCGGGGACGTTCTGTTTCCTGGTTTGCTTATTGTATTTACTTACAGGTTTGACAAAGAAAATAAGAAGAGTGCGTTTAACGGATATTTTCCCTGGTTATTAATTGGCTATGGAATTGGACTCGGTCTTACTTACCTGGGTTTGTATCTCATGAACGGCAACGGCCAGCCTGCACTCCTCTATCTCGTTCCATGTACACTAGGTGTTACAGTGATTTTGGGACTGATAAGGCGCGAGCTGAAACAACTCTGGGATTACGGCGCAGAGGTATCTCCATCGAGCGTTGAACCGTCCGTAGACGCCAGTAGATCGGTCTGA

Protein Analysis

541

Amino Acids

58.72

Weight (kDa)

5.55

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 83 - 170 4.5e-15 PA domain
Peptidase_A22B PF04258 244 - 522 1.2e-94 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
AarI CACCTGC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 191
AccI GTMKAC 2 cut(s) 821, 1602
AccII CGCG 2 cut(s) 334, 1539
AciI CCGC 3 cut(s) 31, 998, 1030
AcoI YGGCCR 3 cut(s) 172, 1051, 1468
AcyI GRCGYC 3 cut(s) 17, 1034, 1605
AdeI CACNNNGTG 1 cut(s) 1508
AfaI GTAC 4 cut(s) 451, 849, 1131, 1501
AfiI CCNNNNNNNGG 3 cut(s) 281, 636, 1286
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 6 cut(s) 194, 460, 468, 524, 1192, 1592
AjnI CCWGG 4 cut(s) 1280, 1324, 1397, 1440
AluBI AGCT 4 cut(s) 317, 421, 544, 1543
AluI AGCT 4 cut(s) 317, 421, 544, 1543
Alw26I GTCTC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 4 cut(s) 69, 172, 1051, 1468
ArsI GACNNNNNNTTYG 4 cut(s) 925, 957, 1185, 1217
AseI ATTAAT 1 cut(s) 1406
AspLEI GCGC 4 cut(s) 394, 764, 1539, 1568
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 1027
AsuHPI GGTGA 6 cut(s) 89, 350, 412, 1170, 1235, 1247
AsuII TTCGAA 1 cut(s) 302
BalI TGGCCA 2 cut(s) 174, 1053
BbsI GAAGAC 1 cut(s) 938
BccI CCATC 5 cut(s) 424, 491, 521, 598, 1588
BceAI ACGGC 5 cut(s) 230, 1243, 1477, 1483, 1579
BcgI CGANNNNNNTGC 5 cut(s) 34, 925, 959, 1082, 1116
BciT130I CCWGG 4 cut(s) 1282, 1326, 1399, 1442
BcnI CCSGG 1 cut(s) 1027
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 4 cut(s) 35, 395, 686, 1505
BfoI RGCGCY 2 cut(s) 395, 765
BfuAI ACCTGC 1 cut(s) 191
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 1 cut(s) 999
BlsI GCNGC 1 cut(s) 1000
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 5 cut(s) 1027, 1282, 1326, 1399, 1442
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 5 cut(s) 1027, 1282, 1326, 1399, 1442
BmsI GCATC 1 cut(s) 794
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 4 cut(s) 492, 524, 1249, 1281
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 1027
BsaHI GRCGYC 3 cut(s) 17, 1034, 1605
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 5 cut(s) 73, 1280, 1281, 1397, 1441
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 636, 1286
Bse1I ACTGG 3 cut(s) 569, 712, 1608
Bse3DI GCAATG 2 cut(s) 12, 18
BseBI CCWGG 4 cut(s) 1282, 1326, 1399, 1442
BseDI CCNNGG 5 cut(s) 73, 1280, 1281, 1397, 1441
BseGI GGATG 3 cut(s) 103, 785, 961
BseLI CCNNNNNNNGG 3 cut(s) 281, 636, 1286
BseMI GCAATG 2 cut(s) 12, 18
BseMII CTCAG 3 cut(s) 597, 720, 884
BseNI ACTGG 3 cut(s) 569, 712, 1608
BseRI GAGGAG 2 cut(s) 17, 1472
BsgI GTGCAG 1 cut(s) 1461
Bsh1236I CGCG 2 cut(s) 334, 1539
BshFI GGCC 4 cut(s) 71, 174, 1053, 1470
BsiSI CCGG 1 cut(s) 1027
BslFI GGGAC 2 cut(s) 1325, 1539
BslI CCNNNNNNNGG 3 cut(s) 281, 636, 1286
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 1325, 1539
BsmI GAATGC 1 cut(s) 882
BsnI GGCC 4 cut(s) 71, 174, 1053, 1470
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 302
Bsp1407I TGTACA 1 cut(s) 1499
Bsp143I GATC 1 cut(s) 1613
BspACI CCGC 3 cut(s) 31, 998, 1030
BspANI GGCC 4 cut(s) 71, 174, 1053, 1470
BspCNI CTCAG 3 cut(s) 596, 721, 885
BspFNI CGCG 2 cut(s) 334, 1539
BspHI TCATGA 2 cut(s) 741, 1455
BspLI GGNNCC 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 12, 18
BsrGI TGTACA 1 cut(s) 1499
BsrI ACTGG 3 cut(s) 569, 712, 1608
BssECI CCNNGG 5 cut(s) 73, 1280, 1281, 1397, 1441
BssMI GATC 1 cut(s) 1613
BssNI GRCGYC 3 cut(s) 17, 1034, 1605
Bst2UI CCWGG 4 cut(s) 1282, 1326, 1399, 1442
Bst4CI ACNGT 6 cut(s) 375, 1087, 1129, 1213, 1516, 1596
Bst6I CTCTTC 3 cut(s) 411, 954, 1367
BstACI GRCGYC 3 cut(s) 17, 1034, 1605
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 1499
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 6 cut(s) 423, 760, 1032, 1472, 1476, 1541
BstDEI CTNAG 5 cut(s) 387, 583, 729, 749, 893
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 103, 785, 961
BstFNI CGCG 2 cut(s) 334, 1539
BstH2I RGCGCY 2 cut(s) 395, 765
BstHHI GCGC 4 cut(s) 394, 764, 1539, 1568
BstKTI GATC 1 cut(s) 1616
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 1613
BstMWI GCNNNNNNNGC 4 cut(s) 368, 431, 995, 1004
BstNI CCWGG 4 cut(s) 1282, 1326, 1399, 1442
BstSCI CCNGG 5 cut(s) 1025, 1280, 1324, 1397, 1440
BstUI CGCG 2 cut(s) 334, 1539
BstV2I GAAGAC 1 cut(s) 938
BsuRI GGCC 4 cut(s) 71, 174, 1053, 1470
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 3 cut(s) 103, 785, 961
BtsI GCAGTG 1 cut(s) 1237
BtsIMutI CAGTG 3 cut(s) 576, 1237, 1521
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 6 cut(s) 423, 760, 1032, 1472, 1476, 1541
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 2 cut(s) 741, 1455
CfoI GCGC 4 cut(s) 394, 764, 1539, 1568
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 6 cut(s) 6, 282, 554, 1023, 1189, 1613
Csp6I GTAC 4 cut(s) 450, 848, 1130, 1500
CviAII CATG 7 cut(s) 88, 176, 742, 1044, 1204, 1456, 1497
CviQI GTAC 4 cut(s) 450, 848, 1130, 1500
DdeI CTNAG 5 cut(s) 387, 583, 729, 749, 893
DpnI GATC 1 cut(s) 1615
DpnII GATC 1 cut(s) 1613
DraI TTTAAA 1 cut(s) 279
DraIII CACNNNGTG 1 cut(s) 1508
EaeI YGGCCR 3 cut(s) 172, 1051, 1468
Eam1104I CTCTTC 3 cut(s) 411, 954, 1367
EarI CTCTTC 3 cut(s) 411, 954, 1367
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 4 cut(s) 1280, 1324, 1397, 1440
EcoT22I ATGCAT 1 cut(s) 882
FaeI CATG 7 cut(s) 91, 179, 745, 1047, 1207, 1459, 1500
FalI AAGNNNNNCTT 4 cut(s) 528, 560, 1047, 1079
FaqI GGGAC 2 cut(s) 1325, 1539
FatI CATG 7 cut(s) 87, 175, 741, 1043, 1203, 1455, 1496
FauI CCCGC 1 cut(s) 1023
FblI GTMKAC 2 cut(s) 821, 1602
Fnu4HI GCNGC 1 cut(s) 999
FokI GGATG 3 cut(s) 110, 772, 968
Fsp4HI GCNGC 1 cut(s) 999
FspBI CTAG 4 cut(s) 35, 395, 686, 1505
GlaI GCGC 4 cut(s) 393, 763, 1538, 1567
GluI GCNGC 1 cut(s) 999
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 2 cut(s) 395, 765
HaeIII GGCC 4 cut(s) 71, 174, 1053, 1470
HapII CCGG 1 cut(s) 1027
HgaI GACGC 6 cut(s) 6, 282, 554, 1023, 1189, 1613
HhaI GCGC 4 cut(s) 394, 764, 1539, 1568
Hin1I GRCGYC 3 cut(s) 17, 1034, 1605
Hin1II CATG 7 cut(s) 91, 179, 745, 1047, 1207, 1459, 1500
Hin6I GCGC 4 cut(s) 392, 762, 1537, 1566
HinP1I GCGC 4 cut(s) 392, 762, 1537, 1566
HinfI GANTC 7 cut(s) 104, 271, 698, 725, 745, 1260, 1425
HpaII CCGG 1 cut(s) 1027
HphI GGTGA 6 cut(s) 89, 350, 412, 1170, 1235, 1247
Hpy166II GTNNAC 5 cut(s) 330, 577, 822, 1502, 1603
Hpy188I TCNGA 6 cut(s) 54, 496, 667, 730, 894, 1622
Hpy188III TCNNGA 9 cut(s) 268, 312, 378, 440, 511, 656, 742, 953, 1456
Hpy8I GTNNAC 5 cut(s) 330, 577, 822, 1502, 1603
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 132, 173, 188, 237
HpyCH4III ACNGT 6 cut(s) 375, 1087, 1129, 1213, 1516, 1596
HpyCH4IV ACGT 1 cut(s) 1314
HpyCH4V TGCA 9 cut(s) 129, 206, 371, 858, 880, 1007, 1093, 1145, 1478
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 431, 995, 1004
HpyF3I CTNAG 5 cut(s) 387, 583, 729, 749, 893
HpySE526I ACGT 1 cut(s) 1314
Hsp92I GRCGYC 3 cut(s) 17, 1034, 1605
Hsp92II CATG 7 cut(s) 91, 179, 745, 1047, 1207, 1459, 1500
HspAI GCGC 4 cut(s) 392, 762, 1537, 1566
Kzo9I GATC 1 cut(s) 1613
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 314, 541, 658
LweI GCATC 1 cut(s) 794
MaeI CTAG 4 cut(s) 35, 395, 686, 1505
MaeII ACGT 1 cut(s) 1314
MaeIII GTNAC 6 cut(s) 344, 1021, 1176, 1207, 1223, 1510
MalI GATC 1 cut(s) 1615
MboI GATC 1 cut(s) 1613
MboII GAAGA 7 cut(s) 248, 291, 428, 536, 941, 943, 1384
MlsI TGGCCA 2 cut(s) 174, 1053
MluCI AATT 8 cut(s) 160, 251, 468, 673, 883, 1095, 1407, 1419
MluI ACGCGT 1 cut(s) 332
MluNI TGGCCA 2 cut(s) 174, 1053
MlyI GAGTC 1 cut(s) 1419
MmeI TCCRAC 1 cut(s) 592
Mox20I TGGCCA 2 cut(s) 174, 1053
Mph1103I ATGCAT 1 cut(s) 882
MscI TGGCCA 2 cut(s) 174, 1053
MseI TTAA 6 cut(s) 156, 168, 278, 1184, 1383, 1406
MslI CAYNNNNRTG 2 cut(s) 885, 1042
Msp20I TGGCCA 2 cut(s) 174, 1053
MspI CCGG 1 cut(s) 1027
MspR9I CCNGG 5 cut(s) 1027, 1282, 1326, 1399, 1442
Mva1269I GAATGC 1 cut(s) 882
MvaI CCWGG 4 cut(s) 1282, 1326, 1399, 1442
MvnI CGCG 2 cut(s) 334, 1539
MwoI GCNNNNNNNGC 4 cut(s) 368, 431, 995, 1004
NciI CCSGG 1 cut(s) 1027
NdeII GATC 1 cut(s) 1613
NlaIII CATG 7 cut(s) 91, 179, 745, 1047, 1207, 1459, 1500
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 3 cut(s) 344, 1176, 1223
NsiI ATGCAT 1 cut(s) 882
NspV TTCGAA 1 cut(s) 302
PagI TCATGA 2 cut(s) 741, 1455
PaqCI CACCTGC 1 cut(s) 191
PasI CCCWGGG 1 cut(s) 1281
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 1 cut(s) 882
PfeI GAWTC 6 cut(s) 104, 271, 698, 725, 745, 1260
PflFI GACNNNGTC 2 cut(s) 737, 1428
PkrI GCNGC 1 cut(s) 1000
PleI GAGTC 1 cut(s) 1419
PpsI GAGTC 1 cut(s) 1419
PshBI ATTAAT 1 cut(s) 1406
PsiI TTATAA 1 cut(s) 678
Psp6I CCWGG 4 cut(s) 1280, 1324, 1397, 1440
PspGI CCWGG 4 cut(s) 1280, 1324, 1397, 1440
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 764
PsyI GACNNNGTC 2 cut(s) 737, 1428
RsaI GTAC 4 cut(s) 451, 849, 1131, 1501
RsaNI GTAC 4 cut(s) 450, 848, 1130, 1500
RseI CAYNNNNRTG 2 cut(s) 885, 1042
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 6 cut(s) 156, 168, 278, 1184, 1383, 1406
SatI GCNGC 1 cut(s) 999
Sau3AI GATC 1 cut(s) 1613
Sau96I GGNCC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 1 cut(s) 1419
ScrFI CCNGG 5 cut(s) 1027, 1282, 1326, 1399, 1442
SfaNI GCATC 1 cut(s) 794
SfuI TTCGAA 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 885, 1042
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 8 cut(s) 160, 251, 468, 673, 883, 1095, 1407, 1419
SsiI CCGC 3 cut(s) 31, 998, 1030
SspI AATATT 2 cut(s) 463, 1188
SspMI CTAG 4 cut(s) 35, 395, 686, 1505
StyD4I CCNGG 5 cut(s) 1025, 1280, 1324, 1397, 1440
TaaI ACNGT 6 cut(s) 375, 1087, 1129, 1213, 1516, 1596
TaiI ACGT 1 cut(s) 1317
TaqI TCGA 4 cut(s) 269, 302, 1102, 1583
TaqII GACCGA 2 cut(s) 1418, 1606
TasI AATT 8 cut(s) 160, 251, 468, 673, 883, 1095, 1407, 1419
TatI WGTACW 3 cut(s) 449, 847, 1499
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 6 cut(s) 104, 271, 698, 725, 745, 1260
Tru1I TTAA 6 cut(s) 156, 168, 278, 1184, 1383, 1406
Tru9I TTAA 6 cut(s) 156, 168, 278, 1184, 1383, 1406
TscAI CASTG 3 cut(s) 576, 1237, 1521
TseFI GTSAC 3 cut(s) 344, 1176, 1223
Tsp45I GTSAC 3 cut(s) 344, 1176, 1223
TspDTI ATGAA 6 cut(s) 192, 429, 696, 758, 1032, 1472
TspGWI ACGGA 3 cut(s) 343, 1401, 1588
TspRI CASTG 3 cut(s) 576, 1237, 1521
Tth111I GACNNNGTC 2 cut(s) 737, 1428
VspI ATTAAT 1 cut(s) 1406
XcmI CCANNNNNNNNNTGG 2 cut(s) 568, 1061
XmiI GTMKAC 2 cut(s) 821, 1602
XspI CTAG 4 cut(s) 35, 395, 686, 1505
ZrmI AGTACT 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.