Rroxscaffold_5G00353920

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
31896432 .. 31906012
9581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353920.1

Sequence Viewer

Length: 1623 bp
ATGGCGTCGTCGTCGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCGCTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCGAGGACTCCACCCCCAACAAACCCTCCTGCAACAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAACGGCGACGAAGGCAAAACTGTTGAGGGGGTTGGTGCAAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTTCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGGGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCTGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATAATGAAGAAGACCTTGCCATGATGGGCTGTCCTGCGAACGGCACTTTGGATGTTTCAATATTTGTTGCAATGATTCAAAAGTCAGACGGAGAACATCTCAAGAAATCTGTTGAAGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGGTGGTGGACTTTGGAGTTGCGTTTTTATGGCTGATGGCTGTTGGAACGATAAAAATGGCCTCATATTGGAAAACGATTACTGTTGTCGAGCAAAATGATGACCCTTACAAAGAACTAGCAGAAAAGGATTCTATGAGAACAGCGAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGTGTGTTTTGTCATAACAGCATCCACTTTTCTGTTGCTACTATACTTTTTTATGTCTACGTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCAGGGAATGCATAATGTTATCTCAAGCCTGATTTTGAGAACATGGAAAAGCGGTGGACGGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCGCTTGTTATATTGCTTGTCTCTGTGGCATTTGCAATTTTCTGGTGTGTAACGCGGCGGGAATCATATTCCTGGGTTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACAGTCTTGCAAATCGCTCAATTACCTAACATCAAGGTTGCTACAGTACTACTATGTTGTGCATTTCTCTACGACATCTTTTGGGTATTCGTGTCACCCTTATTCTTTAAAGACAGCGTCATGATTGCGGTTGCTAGAGGTGACAATGCTGGTGGTGAAGCCCTACCAATGCTTTTGAGAGTCCCTAAATTTTTTGACCCCTGGGGTGGTCAGAATATGATTGGCTTTGGGGACATTCTGTTTCCGGGTTTGCTTATTTTATTTACTTTCAGATTTGACAAAGAAAACAAGAGGAGTATGATCAATGGGTATTTTCTATGGTTGCTAATTGGCTATGGAATGGGGCTTTTTTTTACGTACTTGGGCTTGTACCTCATGAATGGCAATGGTCAGCCTGCACTCCTCTATCTTGTTCCATGCACACTAGGTGTTACAGTGATTTTGGGTTTGATAAGAGGTGAGCTGAAAGAACTTTGGAGTTATGGCACAGTGCTATATCCAACTCTGGGTGATTCTGGACAAGACAATAGATCAGTGAGAGTTTGA

Protein Analysis

540

Amino Acids

59.45

Weight (kDa)

6.83

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 83 - 169 2.3e-14 PA domain
Peptidase_A22B PF04258 242 - 521 5e-94 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 743
Acc36I ACCTGC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 815
AccII CGCG 2 cut(s) 336, 1021
AciI CCGC 6 cut(s) 336, 858, 915, 1021, 1024, 1205
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 3 cut(s) 209, 251, 1265
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 2 cut(s) 338, 1505
AfaI GTAC 4 cut(s) 843, 1125, 1436, 1448
AfiI CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1283, 1583
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 7 cut(s) 81, 239, 280, 465, 485, 521, 950
AjnI CCWGG 2 cut(s) 1037, 1277
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 3 cut(s) 245, 541, 1540
AluI AGCT 3 cut(s) 245, 541, 1540
Alw26I GTCTC 2 cut(s) 961, 991
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 624, 1045
ApeKI GCWGC 2 cut(s) 56, 285
ApoI RAATTY 3 cut(s) 209, 251, 1265
AsuC2I CCSGG 1 cut(s) 1323
AsuHPI GGTGA 8 cut(s) 160, 350, 412, 1164, 1229, 1244, 1547, 1598
BalI TGGCCA 1 cut(s) 1047
BbsI GAAGAC 2 cut(s) 26, 423
BbvI GCAGC 2 cut(s) 43, 272
BccI CCATC 3 cut(s) 424, 518, 595
BceAI ACGGC 2 cut(s) 187, 463
BciT130I CCWGG 2 cut(s) 1039, 1279
BclI TGATCA 1 cut(s) 1377
BcnI CCSGG 1 cut(s) 1323
BcoDI GTCTC 2 cut(s) 961, 991
BfaI CTAG 3 cut(s) 683, 1212, 1502
BfmI CTRYAG 1 cut(s) 1119
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 3 cut(s) 57, 286, 1022
BlsI GCNGC 3 cut(s) 58, 287, 1023
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 3 cut(s) 1039, 1279, 1323
BmrFI CCNGG 3 cut(s) 1039, 1279, 1323
BmsI GCATC 1 cut(s) 788
BpiI GAAGAC 2 cut(s) 26, 423
BplI GAGNNNNNCTC 2 cut(s) 489, 521
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 491, 871
BpuMI CCSGG 1 cut(s) 1323
BsaAI YACGTR 2 cut(s) 819, 1434
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 961
BsaJI CCNNGG 4 cut(s) 735, 1038, 1277, 1278
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1283, 1583
Bse3DI GCAATG 2 cut(s) 483, 1468
BseBI CCWGG 2 cut(s) 1039, 1279
BseDI CCNNGG 4 cut(s) 735, 1038, 1277, 1278
BseGI GGATG 2 cut(s) 463, 779
BseLI CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1283, 1583
BseMI GCAATG 2 cut(s) 483, 1468
BseMII CTCAG 2 cut(s) 317, 714
BseRI GAGGAG 2 cut(s) 1384, 1469
BseXI GCAGC 2 cut(s) 43, 272
BsgI GTGCAG 1 cut(s) 1458
Bsh1236I CGCG 2 cut(s) 336, 1021
BshFI GGCC 2 cut(s) 626, 1047
BsiSI CCGG 3 cut(s) 378, 566, 1322
BslFI GGGAC 2 cut(s) 1244, 1322
BslI CCNNNNNNNGG 5 cut(s) 281, 446, 633, 1283, 1583
BsmAI GTCTC 2 cut(s) 961, 991
BsmFI GGGAC 2 cut(s) 1244, 1322
BsmI GAATGC 1 cut(s) 876
BsnI GGCC 2 cut(s) 626, 1047
Bso31I GGTCTC 1 cut(s) 961
Bsp143I GATC 3 cut(s) 837, 1377, 1607
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 6 cut(s) 336, 858, 915, 1021, 1024, 1205
BspANI GGCC 2 cut(s) 626, 1047
BspCNI CTCAG 2 cut(s) 316, 715
BspFNI CGCG 2 cut(s) 336, 1021
BspHI TCATGA 2 cut(s) 1197, 1452
BspMI ACCTGC 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 961
BsrDI GCAATG 2 cut(s) 483, 1468
BssECI CCNNGG 4 cut(s) 735, 1038, 1277, 1278
BssMI GATC 3 cut(s) 837, 1377, 1607
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 1039, 1279
Bst4CI ACNGT 6 cut(s) 190, 649, 1081, 1123, 1513, 1567
Bst6I CTCTTC 2 cut(s) 304, 945
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 2 cut(s) 819, 1434
BstC8I GCNNGC 1 cut(s) 1473
BstDEI CTNAG 3 cut(s) 303, 387, 723
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 2 cut(s) 463, 779
BstFNI CGCG 2 cut(s) 336, 1021
BstKTI GATC 3 cut(s) 840, 1380, 1610
BstMAI GTCTC 2 cut(s) 961, 991
BstMBI GATC 3 cut(s) 837, 1377, 1607
BstMWI GCNNNNNNNGC 3 cut(s) 180, 368, 383
BstNI CCWGG 2 cut(s) 1039, 1279
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 3 cut(s) 1037, 1277, 1321
BstSFI CTRYAG 1 cut(s) 1119
BstSNI TACGTA 1 cut(s) 1434
BstUI CGCG 2 cut(s) 336, 1021
BstV1I GCAGC 2 cut(s) 43, 272
BstV2I GAAGAC 2 cut(s) 26, 423
BsuRI GGCC 2 cut(s) 626, 1047
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 2 cut(s) 463, 779
BtsIMutI CAGTG 3 cut(s) 1518, 1572, 1617
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 1 cut(s) 1473
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 2 cut(s) 1197, 1452
CseI GACGC 2 cut(s) 551, 1183
Csp6I GTAC 4 cut(s) 842, 1124, 1435, 1447
CspCI CAANNNNNGTGG 2 cut(s) 1210, 1245
CviAII CATG 7 cut(s) 427, 736, 906, 935, 1198, 1453, 1494
CviQI GTAC 4 cut(s) 842, 1124, 1435, 1447
DdeI CTNAG 3 cut(s) 303, 387, 723
DpnI GATC 3 cut(s) 839, 1379, 1609
DpnII GATC 3 cut(s) 837, 1377, 1607
DraI TTTAAA 1 cut(s) 1186
DraIII CACNNNGTG 2 cut(s) 338, 1505
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 2 cut(s) 304, 945
EarI CTCTTC 2 cut(s) 304, 945
Eco105I TACGTA 1 cut(s) 1434
Eco130I CCWWGG 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 961
EcoRII CCWGG 2 cut(s) 1037, 1277
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 7 cut(s) 430, 739, 909, 938, 1201, 1456, 1497
FalI AAGNNNNNCTT 6 cut(s) 405, 437, 525, 557, 1041, 1073
FaqI GGGAC 2 cut(s) 1244, 1322
FatI CATG 7 cut(s) 426, 735, 905, 934, 1197, 1452, 1493
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 1 cut(s) 1377
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 3 cut(s) 57, 286, 1022
FokI GGATG 2 cut(s) 470, 766
Fsp4HI GCNGC 3 cut(s) 57, 286, 1022
FspBI CTAG 3 cut(s) 683, 1212, 1502
GluI GCNGC 3 cut(s) 57, 286, 1022
HaeIII GGCC 2 cut(s) 626, 1047
HapII CCGG 3 cut(s) 378, 566, 1322
HgaI GACGC 2 cut(s) 551, 1183
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 430, 739, 909, 938, 1201, 1456, 1497
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 7 cut(s) 104, 481, 695, 719, 1028, 1257, 1589
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 3 cut(s) 378, 566, 1322
HphI GGTGA 8 cut(s) 160, 350, 412, 1164, 1229, 1244, 1547, 1598
Hpy166II GTNNAC 5 cut(s) 169, 330, 574, 816, 920
Hpy188I TCNGA 4 cut(s) 493, 724, 1290, 1349
Hpy188III TCNNGA 4 cut(s) 508, 1198, 1453, 1593
Hpy8I GTNNAC 5 cut(s) 169, 330, 574, 816, 920
Hpy99I CGWCG 6 cut(s) 10, 13, 16, 19, 22, 179
HpyAV CCTTC 5 cut(s) 145, 173, 237, 286, 919
HpyCH4III ACNGT 6 cut(s) 190, 649, 1081, 1123, 1513, 1567
HpyCH4IV ACGT 2 cut(s) 818, 1433
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 368, 383
HpyF3I CTNAG 3 cut(s) 303, 387, 723
HpySE526I ACGT 2 cut(s) 818, 1433
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 430, 739, 909, 938, 1201, 1456, 1497
Ksp22I TGATCA 1 cut(s) 1377
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 837, 1377, 1607
LmnI GCTCC 2 cut(s) 293, 538
Lsp1109I GCAGC 2 cut(s) 43, 272
LweI GCATC 1 cut(s) 788
MaeI CTAG 3 cut(s) 683, 1212, 1502
MaeII ACGT 2 cut(s) 818, 1433
MaeIII GTNAC 5 cut(s) 344, 1015, 1170, 1217, 1507
MalI GATC 3 cut(s) 839, 1379, 1609
MboI GATC 3 cut(s) 837, 1377, 1607
MboII GAAGA 7 cut(s) 26, 291, 425, 428, 533, 728, 962
MlsI TGGCCA 1 cut(s) 1047
MluCI AATT 7 cut(s) 76, 209, 251, 1002, 1097, 1265, 1404
MluNI TGGCCA 1 cut(s) 1047
MlyI GAGTC 2 cut(s) 98, 1266
MmeI TCCRAC 2 cut(s) 589, 1601
Mox20I TGGCCA 1 cut(s) 1047
Mph1103I ATGCAT 1 cut(s) 876
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 5 cut(s) 156, 168, 357, 744, 1185
Msp20I TGGCCA 1 cut(s) 1047
MspI CCGG 3 cut(s) 378, 566, 1322
MspR9I CCNGG 3 cut(s) 1039, 1279, 1323
Mva1269I GAATGC 1 cut(s) 876
MvaI CCWGG 2 cut(s) 1039, 1279
MvnI CGCG 2 cut(s) 336, 1021
MwoI GCNNNNNNNGC 3 cut(s) 180, 368, 383
NciI CCSGG 1 cut(s) 1323
NcoI CCATGG 1 cut(s) 735
NdeII GATC 3 cut(s) 837, 1377, 1607
NlaIII CATG 7 cut(s) 430, 739, 909, 938, 1201, 1456, 1497
NmuCI GTSAC 3 cut(s) 344, 1170, 1217
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 1 cut(s) 938
PagI TCATGA 2 cut(s) 1197, 1452
PaqCI CACCTGC 1 cut(s) 743
PasI CCCWGGG 1 cut(s) 1278
PciI ACATGT 1 cut(s) 934
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 876
PfeI GAWTC 5 cut(s) 481, 695, 719, 1028, 1589
PflFI GACNNNGTC 1 cut(s) 1193
PkrI GCNGC 3 cut(s) 58, 287, 1023
PleI GAGTC 2 cut(s) 98, 1265
PpsI GAGTC 2 cut(s) 98, 1265
Ppu21I YACGTR 2 cut(s) 819, 1434
PscI ACATGT 1 cut(s) 934
Psp6I CCWGG 2 cut(s) 1037, 1277
PspGI CCWGG 2 cut(s) 1037, 1277
PstNI CAGNNNCTG 1 cut(s) 758
PsyI GACNNNGTC 1 cut(s) 1193
RsaI GTAC 4 cut(s) 843, 1125, 1436, 1448
RsaNI GTAC 4 cut(s) 842, 1124, 1435, 1447
SaqAI TTAA 5 cut(s) 156, 168, 357, 744, 1185
SatI GCNGC 3 cut(s) 57, 286, 1022
Sau3AI GATC 3 cut(s) 837, 1377, 1607
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 2 cut(s) 98, 1266
ScrFI CCNGG 3 cut(s) 1039, 1279, 1323
SfaNI GCATC 1 cut(s) 788
SfcI CTRYAG 1 cut(s) 1119
SmlI CTYRAG 2 cut(s) 506, 886
SmoI CTYRAG 2 cut(s) 506, 886
SnaBI TACGTA 1 cut(s) 1434
Sse9I AATT 7 cut(s) 76, 209, 251, 1002, 1097, 1265, 1404
SsiI CCGC 6 cut(s) 336, 858, 915, 1021, 1024, 1205
SspI AATATT 1 cut(s) 468
SspMI CTAG 3 cut(s) 683, 1212, 1502
StyD4I CCNGG 3 cut(s) 1037, 1277, 1321
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 6 cut(s) 190, 649, 1081, 1123, 1513, 1567
TaiI ACGT 2 cut(s) 821, 1436
TaqI TCGA 1 cut(s) 654
TasI AATT 7 cut(s) 76, 209, 251, 1002, 1097, 1265, 1404
TatI WGTACW 1 cut(s) 1123
TauI GCSGC 1 cut(s) 1024
TfiI GAWTC 5 cut(s) 481, 695, 719, 1028, 1589
Tru1I TTAA 5 cut(s) 156, 168, 357, 744, 1185
Tru9I TTAA 5 cut(s) 156, 168, 357, 744, 1185
TscAI CASTG 3 cut(s) 1518, 1572, 1617
TseFI GTSAC 3 cut(s) 344, 1170, 1217
TseI GCWGC 2 cut(s) 56, 285
Tsp45I GTSAC 3 cut(s) 344, 1170, 1217
TspDTI ATGAA 3 cut(s) 419, 426, 1469
TspGWI ACGGA 3 cut(s) 20, 510, 937
TspRI CASTG 3 cut(s) 1518, 1572, 1617
Tth111I GACNNNGTC 1 cut(s) 1193
XapI RAATTY 3 cut(s) 209, 251, 1265
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 2 cut(s) 565, 1055
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 3 cut(s) 683, 1212, 1502
ZrmI AGTACT 1 cut(s) 1125
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.