Rw4G012770

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
29975056 .. 29984458
9403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012770.1

Sequence Viewer

Length: 1626 bp
ATGGCGTCGTCGTCGTCGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCACTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCAAGGATTCCACCCCCAACAAACCCTCCTGCAACAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAATGGCGACGAAGGCAAAACTGTTGAGGGGGTTGGTGCCAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTGCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGAGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATGATAAAGAAGACCTTGCCATGATGGGCTGTCCTGCAAACGGCACTTTGGATGTTTCGATATTTGTTGCAATGATTCAAAAGTCAGACGGAGAACATCTCAAGAAATCTGTTGAAGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGGTGGTGGACTTTGGAGTTGCGTTTTTATGGCTGATGGCTGTTGGAACGATAACAATGGCCTCATATTGGAAAACGATTACTGTTGTCGAGCAAAATGATGACCCTTACAAAGAACTAGCAGAAAAGGATTCTATGAGAACAGCGAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGTGTGTTTTGTCATAACAGCATCCACTTTTCTGTTGCTACTATACTTTTTTATGTCTACGTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCAGGGAATGCATAATGTTATCTCAAGCCTGATTTTGAGAACATGGAAAAGCGGTGGACGGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCGCTTGTTATATTGCTCGTCTCTGTGGCATTTGCAATTTTCTGGTGTGTAACGCGGCAGGAATCATATTCCTGGATTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACAGTCTTGCAAATCGCTCAATTACCTAACATCAAGGTTGCTACAGTACTACTATGTTGTGCATTTATCTACGACATCTTTTGGGTATTCGTGTCACCCTTATTCTTTAAAGACAGCGTCATGATTGCGGTTGCTAGAGGTGACAAAGCTGGTGGTGAAGCCCTACCAATGCTTTTGAGAGTCCCTAAATTTTTTGACCCCTGGGGTGGTCAGAATATGATTGGCTTTGGGGACATTCTGTTTCCGGGTTTGCTTATTTTATTTACTTTCAGATTTGACAAAGAAAACAAGAAGAGTATGATCAATGGGTATTTTCTATGGTTGCTAATTGGCTATGGAATGGGGCTTTTTTTTACGTACTTGGGCTTGTACCTCATGAATGGCAATGGTCAGCCTGCACTCCTCTATCTTGTTCCATGCACACTAGGTGTTACAGTGATTTTGGGTTTGATAAGAGGTGAGCTGAAAGAACTTTGGAGTTATGGCACAGTGCTATATCCAACTCTGGGTGATTCTGGACAAGACAATAGATCAGTGAGAGTTTGA

Protein Analysis

541

Amino Acids

59.47

Weight (kDa)

7.88

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 84 - 170 4.7e-14 PA domain
Peptidase_A22B PF04258 243 - 522 1.3e-94 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 746
Acc36I ACCTGC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 818
AccII CGCG 2 cut(s) 339, 1024
AciI CCGC 5 cut(s) 339, 861, 918, 1024, 1208
AcoI YGGCCR 1 cut(s) 1048
AcsI RAATTY 2 cut(s) 212, 1268
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 2 cut(s) 341, 1508
AfaI GTAC 4 cut(s) 846, 1128, 1439, 1451
AfiI CCNNNNNNNGG 6 cut(s) 216, 284, 449, 636, 1286, 1586
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 6 cut(s) 84, 242, 283, 488, 524, 953
AjnI CCWGG 2 cut(s) 1040, 1280
AluBI AGCT 5 cut(s) 248, 320, 544, 1229, 1543
AluI AGCT 5 cut(s) 248, 320, 544, 1229, 1543
Alw26I GTCTC 2 cut(s) 964, 994
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 2 cut(s) 627, 1048
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 2 cut(s) 212, 1268
AsuC2I CCSGG 1 cut(s) 1326
AsuHPI GGTGA 8 cut(s) 163, 353, 415, 1167, 1232, 1247, 1550, 1601
BalI TGGCCA 1 cut(s) 1050
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 29, 426
BbvI GCAGC 1 cut(s) 275
BccI CCATC 3 cut(s) 427, 521, 598
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 2 cut(s) 1042, 1282
BclI TGATCA 1 cut(s) 1380
BcnI CCSGG 1 cut(s) 1326
BcoDI GTCTC 2 cut(s) 964, 994
BfaI CTAG 3 cut(s) 686, 1215, 1505
BfmI CTRYAG 1 cut(s) 1122
BfuAI ACCTGC 1 cut(s) 746
BisI GCNGC 2 cut(s) 289, 1025
BlsI GCNGC 2 cut(s) 290, 1026
BmcAI AGTACT 1 cut(s) 1128
Bme1390I CCNGG 3 cut(s) 1042, 1282, 1326
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 3 cut(s) 1042, 1282, 1326
BmsI GCATC 1 cut(s) 791
BpiI GAAGAC 2 cut(s) 29, 426
BplI GAGNNNNNCTC 2 cut(s) 492, 524
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 494, 874
BpuMI CCSGG 1 cut(s) 1326
BsaAI YACGTR 2 cut(s) 822, 1437
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 964
BsaJI CCNNGG 3 cut(s) 738, 1280, 1281
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 6 cut(s) 216, 284, 449, 636, 1286, 1586
Bse3DI GCAATG 2 cut(s) 486, 1471
BseBI CCWGG 2 cut(s) 1042, 1282
BseDI CCNNGG 3 cut(s) 738, 1280, 1281
BseGI GGATG 2 cut(s) 466, 782
BseLI CCNNNNNNNGG 6 cut(s) 216, 284, 449, 636, 1286, 1586
BseMI GCAATG 2 cut(s) 486, 1471
BseMII CTCAG 2 cut(s) 320, 717
BseRI GAGGAG 1 cut(s) 1472
BseXI GCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 1461
Bsh1236I CGCG 2 cut(s) 339, 1024
BshFI GGCC 2 cut(s) 629, 1050
BshNI GGYRCC 1 cut(s) 206
BsiSI CCGG 3 cut(s) 381, 569, 1325
BslFI GGGAC 2 cut(s) 1247, 1325
BslI CCNNNNNNNGG 6 cut(s) 216, 284, 449, 636, 1286, 1586
BsmAI GTCTC 2 cut(s) 964, 994
BsmBI CGTCTC 1 cut(s) 994
BsmFI GGGAC 2 cut(s) 1247, 1325
BsmI GAATGC 1 cut(s) 879
BsnI GGCC 2 cut(s) 629, 1050
Bso31I GGTCTC 1 cut(s) 964
Bsp143I GATC 3 cut(s) 840, 1380, 1610
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 5 cut(s) 339, 861, 918, 1024, 1208
BspANI GGCC 2 cut(s) 629, 1050
BspCNI CTCAG 2 cut(s) 319, 718
BspFNI CGCG 2 cut(s) 339, 1024
BspHI TCATGA 2 cut(s) 1200, 1455
BspLI GGNNCC 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 746
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 964
BsrDI GCAATG 2 cut(s) 486, 1471
BssECI CCNNGG 3 cut(s) 738, 1280, 1281
BssMI GATC 3 cut(s) 840, 1380, 1610
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 1042, 1282
Bst4CI ACNGT 6 cut(s) 193, 652, 1084, 1126, 1516, 1570
Bst6I CTCTTC 3 cut(s) 307, 948, 1367
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 2 cut(s) 822, 1437
BstC8I GCNNGC 1 cut(s) 1476
BstDEI CTNAG 3 cut(s) 306, 390, 726
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 2 cut(s) 466, 782
BstFNI CGCG 2 cut(s) 339, 1024
BstKTI GATC 3 cut(s) 843, 1383, 1613
BstMAI GTCTC 2 cut(s) 964, 994
BstMBI GATC 3 cut(s) 840, 1380, 1610
BstMWI GCNNNNNNNGC 3 cut(s) 183, 371, 386
BstNI CCWGG 2 cut(s) 1042, 1282
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 3 cut(s) 1040, 1280, 1324
BstSFI CTRYAG 1 cut(s) 1122
BstSNI TACGTA 1 cut(s) 1437
BstUI CGCG 2 cut(s) 339, 1024
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 2 cut(s) 29, 426
BsuRI GGCC 2 cut(s) 629, 1050
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 2 cut(s) 466, 782
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 4 cut(s) 57, 1521, 1575, 1620
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 1 cut(s) 1476
CaiI CAGNNNCTG 1 cut(s) 761
CciI TCATGA 2 cut(s) 1200, 1455
CseI GACGC 2 cut(s) 554, 1186
Csp6I GTAC 4 cut(s) 845, 1127, 1438, 1450
CspCI CAANNNNNGTGG 2 cut(s) 1213, 1248
CviAII CATG 7 cut(s) 430, 739, 909, 938, 1201, 1456, 1497
CviQI GTAC 4 cut(s) 845, 1127, 1438, 1450
DdeI CTNAG 3 cut(s) 306, 390, 726
DpnI GATC 3 cut(s) 842, 1382, 1612
DpnII GATC 3 cut(s) 840, 1380, 1610
DraI TTTAAA 1 cut(s) 1189
DraIII CACNNNGTG 2 cut(s) 341, 1508
EaeI YGGCCR 1 cut(s) 1048
Eam1104I CTCTTC 3 cut(s) 307, 948, 1367
EarI CTCTTC 3 cut(s) 307, 948, 1367
Eco105I TACGTA 1 cut(s) 1437
Eco130I CCWWGG 1 cut(s) 738
Eco31I GGTCTC 1 cut(s) 964
EcoRII CCWGG 2 cut(s) 1040, 1280
EcoT14I CCWWGG 1 cut(s) 738
EcoT22I ATGCAT 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 994
FaeI CATG 7 cut(s) 433, 742, 912, 941, 1204, 1459, 1500
FalI AAGNNNNNCTT 6 cut(s) 408, 440, 528, 560, 1044, 1076
FaqI GGGAC 2 cut(s) 1247, 1325
FatI CATG 7 cut(s) 429, 738, 908, 937, 1200, 1455, 1496
FbaI TGATCA 1 cut(s) 1380
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 2 cut(s) 289, 1025
FokI GGATG 2 cut(s) 473, 769
Fsp4HI GCNGC 2 cut(s) 289, 1025
FspBI CTAG 3 cut(s) 686, 1215, 1505
GluI GCNGC 2 cut(s) 289, 1025
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 629, 1050
HapII CCGG 3 cut(s) 381, 569, 1325
HgaI GACGC 2 cut(s) 554, 1186
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 433, 742, 912, 941, 1204, 1459, 1500
HinfI GANTC 7 cut(s) 107, 484, 698, 722, 1031, 1260, 1592
HpaII CCGG 3 cut(s) 381, 569, 1325
HphI GGTGA 8 cut(s) 163, 353, 415, 1167, 1232, 1247, 1550, 1601
Hpy166II GTNNAC 4 cut(s) 333, 577, 819, 923
Hpy188I TCNGA 4 cut(s) 496, 727, 1293, 1352
Hpy188III TCNNGA 5 cut(s) 315, 511, 1201, 1456, 1596
Hpy8I GTNNAC 4 cut(s) 333, 577, 819, 923
Hpy99I CGWCG 7 cut(s) 10, 13, 16, 19, 22, 25, 182
HpyAV CCTTC 5 cut(s) 148, 176, 240, 289, 922
HpyCH4III ACNGT 6 cut(s) 193, 652, 1084, 1126, 1516, 1570
HpyCH4IV ACGT 2 cut(s) 821, 1436
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 371, 386
HpyF3I CTNAG 3 cut(s) 306, 390, 726
HpySE526I ACGT 2 cut(s) 821, 1436
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 433, 742, 912, 941, 1204, 1459, 1500
Ksp22I TGATCA 1 cut(s) 1380
Kzo9I GATC 3 cut(s) 840, 1380, 1610
LmnI GCTCC 3 cut(s) 296, 317, 541
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 1 cut(s) 791
MaeI CTAG 3 cut(s) 686, 1215, 1505
MaeII ACGT 2 cut(s) 821, 1436
MaeIII GTNAC 5 cut(s) 347, 1018, 1173, 1220, 1510
MalI GATC 3 cut(s) 842, 1382, 1612
MboI GATC 3 cut(s) 840, 1380, 1610
MboII GAAGA 7 cut(s) 29, 294, 431, 536, 731, 965, 1384
MlsI TGGCCA 1 cut(s) 1050
MluCI AATT 7 cut(s) 79, 212, 254, 1005, 1100, 1268, 1407
MluNI TGGCCA 1 cut(s) 1050
MlyI GAGTC 1 cut(s) 1269
MmeI TCCRAC 2 cut(s) 592, 1604
Mox20I TGGCCA 1 cut(s) 1050
Mph1103I ATGCAT 1 cut(s) 879
MscI TGGCCA 1 cut(s) 1050
MseI TTAA 5 cut(s) 159, 171, 360, 747, 1188
Msp20I TGGCCA 1 cut(s) 1050
MspI CCGG 3 cut(s) 381, 569, 1325
MspR9I CCNGG 3 cut(s) 1042, 1282, 1326
Mva1269I GAATGC 1 cut(s) 879
MvaI CCWGG 2 cut(s) 1042, 1282
MvnI CGCG 2 cut(s) 339, 1024
MwoI GCNNNNNNNGC 3 cut(s) 183, 371, 386
NciI CCSGG 1 cut(s) 1326
NcoI CCATGG 1 cut(s) 738
NdeII GATC 3 cut(s) 840, 1380, 1610
NlaIII CATG 7 cut(s) 433, 742, 912, 941, 1204, 1459, 1500
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 3 cut(s) 347, 1173, 1220
NsiI ATGCAT 1 cut(s) 879
NspI RCATGY 1 cut(s) 941
PagI TCATGA 2 cut(s) 1200, 1455
PaqCI CACCTGC 1 cut(s) 746
PasI CCCWGGG 1 cut(s) 1281
PciI ACATGT 1 cut(s) 937
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 17
PctI GAATGC 1 cut(s) 879
PfeI GAWTC 6 cut(s) 107, 484, 698, 722, 1031, 1592
PflFI GACNNNGTC 1 cut(s) 1196
PfoI TCCNGGA 1 cut(s) 1040
PkrI GCNGC 2 cut(s) 290, 1026
PleI GAGTC 1 cut(s) 1268
PpsI GAGTC 1 cut(s) 1268
Ppu21I YACGTR 2 cut(s) 822, 1437
PscI ACATGT 1 cut(s) 937
Psp6I CCWGG 2 cut(s) 1040, 1280
PspGI CCWGG 2 cut(s) 1040, 1280
PspN4I GGNNCC 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 761
PsyI GACNNNGTC 1 cut(s) 1196
RsaI GTAC 4 cut(s) 846, 1128, 1439, 1451
RsaNI GTAC 4 cut(s) 845, 1127, 1438, 1450
SaqAI TTAA 5 cut(s) 159, 171, 360, 747, 1188
SatI GCNGC 2 cut(s) 289, 1025
Sau3AI GATC 3 cut(s) 840, 1380, 1610
ScaI AGTACT 1 cut(s) 1128
SchI GAGTC 1 cut(s) 1269
ScrFI CCNGG 3 cut(s) 1042, 1282, 1326
SfaNI GCATC 1 cut(s) 791
SfcI CTRYAG 1 cut(s) 1122
SmlI CTYRAG 2 cut(s) 509, 889
SmoI CTYRAG 2 cut(s) 509, 889
SnaBI TACGTA 1 cut(s) 1437
Sse9I AATT 7 cut(s) 79, 212, 254, 1005, 1100, 1268, 1407
SsiI CCGC 5 cut(s) 339, 861, 918, 1024, 1208
SspMI CTAG 3 cut(s) 686, 1215, 1505
StyD4I CCNGG 3 cut(s) 1040, 1280, 1324
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 6 cut(s) 193, 652, 1084, 1126, 1516, 1570
TaiI ACGT 2 cut(s) 824, 1439
TaqI TCGA 2 cut(s) 467, 657
TasI AATT 7 cut(s) 79, 212, 254, 1005, 1100, 1268, 1407
TatI WGTACW 1 cut(s) 1126
TauI GCSGC 1 cut(s) 1027
TfiI GAWTC 6 cut(s) 107, 484, 698, 722, 1031, 1592
Tru1I TTAA 5 cut(s) 159, 171, 360, 747, 1188
Tru9I TTAA 5 cut(s) 159, 171, 360, 747, 1188
TscAI CASTG 4 cut(s) 64, 1521, 1575, 1620
TseFI GTSAC 3 cut(s) 347, 1173, 1220
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 3 cut(s) 347, 1173, 1220
TspDTI ATGAA 2 cut(s) 422, 1472
TspGWI ACGGA 4 cut(s) 23, 346, 513, 940
TspRI CASTG 4 cut(s) 64, 1521, 1575, 1620
Tth111I GACNNNGTC 1 cut(s) 1196
XapI RAATTY 2 cut(s) 212, 1268
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 2 cut(s) 568, 1058
XmiI GTMKAC 1 cut(s) 818
XspI CTAG 3 cut(s) 686, 1215, 1505
ZrmI AGTACT 1 cut(s) 1128
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.