Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005706

Physical Location & Seq

Genomic Coordinates Reverse (-)

2899150 .. 2905048

Gene Structure 5899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1041300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATTGATTTAACTTTCACTGAAGTTTCATTCAAAACTTTCATCTTTCAAAGGAAATGTACATCGATCAACCTGTTGACAGTCACTGATAGGAAGATGAAAAGGGCTGCTGGCAATTCCAAGCAGTCTCAGCCTGCTAATGAGGAAACTAGGATGAAGTTCAGGCATGAAAGTCTTCTGCAAGATTACCTCGAACGACAAAAGGTTTGTGGAGCTTCTATTATATTCTCCCAAGCATCGAGTGCTGGACTAGTCTGTTTTCTTCCTGTGGCTGATGGCTGTTGGAATTGCTTCATCTCGGAATCTAATGCTGGAACAGCCAAAGATGATTCTGAGGACGAAGTCATGAATCTTAGTGTGGCGAGTGATGTGTGTTTCATCATAACAGCATTCACTTTTCTGTTGCTACCATATTTCGTTATGTCGACTTGGTTTATCTGGGTGCTGATCATACTTTTCTGCATTGGCGGTATTGAGGAAATGCATAATTGTGTTCTGAGCGTGATTTTGAGGCCAAGATGTTCTTGTTACCACGGAACTACTTTGTCTACGCCATCTTTTGGGTATTCCTGTCACCCTAAATATTCAAAGATAGAGTCAAGGTTGCGAGTGTTCGAGCAAGTTGCTAAAGGTGATAGTAGCGGTGAAGCCTTAACAATGCTCCTGAGAATCCCTCGCTTTTTTAACCCCTGTGGTGGTGGGAATATGATTGGCTTCGGGGACGTTCTGTTTCCTGGTTTGCTTATTGTGTTTACTTACAGATCCCCATACCACCGCAAACGGTTATTACACTCGGAAGTGCACCAATTTTCGTGCATTTGCATTTTTAGAAGGCAATCGTTGATATCTATCAAAGAATACAAAAATCGTGTACGAAATAAAGTGGGGGATAGATGTATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

302

Amino Acids

34.22

Weight (kDa)

8.87

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	112 - 185	5.3e-08	Signal peptide peptidase
Peptidase_A22B	PF04258	203 - 265	2e-08	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05820 AT1G05820 AT1G05820 AT1G05820 AT2G43070 AT2G43070 AT2G43070 AT2G43070
fragaria_vesca	FvH4_4g11900 FvH4_4g11900 FvH4_4g11900 FvH4_4g11900
malus_domestica	MD04G1030600.v1.1 MD13G1278000.v1.1 MD15G1041300.v1.1
prunus_persica	Prupe.1G180000_v2.0.a1
pyrus_communis	pycom04g02590
rosa_chinensis	RchiOBHm_Chr4g0409391
rosa_laevigata	RLG00000008564
rosa_multiflora	Rmu_sc0001616.1_g000041
rosa_roxburghii	Rroxscaffold_5G00353920
rosa_rugosa	Rorug04G0093500
rosa_samantha	Rh4AG156000 Rh4BG155200 Rh4CG165300 Rh4DG149500
rosa_wichuraiana	Rw0G018710 Rw4G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccI	GTMKAC	2 cut(s)	425, 548
AciI	CCGC	3 cut(s)	468, 642, 775
AclWI	GGATC	1 cut(s)	756
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	61, 873
AfiI	CCNNNNNNNGG	2 cut(s)	560, 695
AgsI	TTSAA	3 cut(s)	34, 50, 588
AhlI	ACTAGT	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	1 cut(s)	132
Alw44I	GTGCAC	1 cut(s)	800
AlwI	GGATC	1 cut(s)	756
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	512
ApaLI	GTGCAC	1 cut(s)	800
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	4 cut(s)	189, 221, 581, 613
Asp700I	GAANNNNTTC	2 cut(s)	174, 290
AsuHPI	GGTGA	3 cut(s)	566, 644, 656
BaeGI	GKGCMC	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	269, 562
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	2 cut(s)	150, 251
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	735
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
Bsa29I	ATCGAT	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 695
Bse8I	GATNNNNATC	1 cut(s)	848
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	848
BseLI	CCNNNNNNNGG	2 cut(s)	560, 695
BseMII	CTCAG	4 cut(s)	143, 324, 488, 656
BseSI	GKGCMC	1 cut(s)	804
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	514
BshVI	ATCGAT	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	560, 695
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	804
Bsp1407I	TGTACA	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	66, 447, 761
BspACI	CCGC	3 cut(s)	468, 642, 775
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	4 cut(s)	142, 325, 489, 657
BspDI	ATCGAT	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	345
BspPI	GGATC	1 cut(s)	756
BsrGI	TGTACA	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	3 cut(s)	66, 447, 761
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	82, 783
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	112, 135
BstDEI	CTNAG	5 cut(s)	129, 333, 353, 497, 665
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	69, 450, 764
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	66, 447, 761
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 242, 317
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	733
BstSLI	GKGCMC	1 cut(s)	804
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	514
BsuTUI	ATCGAT	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	18, 84
Cac8I	GCNNGC	2 cut(s)	112, 135
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	345
ClaI	ATCGAT	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	60, 872
CviAII	CATG	2 cut(s)	167, 346
CviJI	RGCY	9 cut(s)	107, 133, 215, 272, 279, 320, 514, 650, 714
CviKI_1	RGCY	9 cut(s)	107, 133, 215, 272, 279, 320, 514, 650, 714
CviQI	GTAC	2 cut(s)	60, 872
DdeI	CTNAG	5 cut(s)	129, 333, 353, 497, 665
DpnI	GATC	3 cut(s)	68, 449, 763
DpnII	GATC	3 cut(s)	66, 447, 761
Eco32I	GATATC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	846
EcoT22I	ATGCAT	1 cut(s)	486
FaeI	CATG	2 cut(s)	170, 349
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	2 cut(s)	166, 345
FbaI	TGATCA	1 cut(s)	447
FblI	GTMKAC	2 cut(s)	425, 548
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	150, 251
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	170, 349
HincII	GTYRAC	2 cut(s)	78, 426
HindII	GTYRAC	2 cut(s)	78, 426
HinfI	GANTC	5 cut(s)	302, 329, 349, 596, 669
HphI	GGTGA	3 cut(s)	566, 644, 656
Hpy166II	GTNNAC	6 cut(s)	78, 426, 549, 753, 802, 872
Hpy188I	TCNGA	4 cut(s)	301, 334, 498, 796
Hpy188III	TCNNGA	2 cut(s)	346, 664
Hpy8I	GTNNAC	6 cut(s)	78, 426, 549, 753, 802, 872
HpyAV	CCTTC	1 cut(s)	825
HpyCH4III	ACNGT	2 cut(s)	82, 783
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	6 cut(s)	181, 462, 484, 802, 816, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 242, 317
HpyF3I	CTNAG	5 cut(s)	129, 333, 353, 497, 665
HpySE526I	ACGT	1 cut(s)	723
Hsp92II	CATG	2 cut(s)	170, 349
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	66, 447, 761
LmnI	GCTCC	2 cut(s)	212, 666
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	150, 251
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	3 cut(s)	82, 527, 572
MalI	GATC	3 cut(s)	68, 449, 763
MboI	GATC	3 cut(s)	66, 447, 761
MboII	GAAGA	3 cut(s)	106, 167, 254
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	1 cut(s)	804
MluCI	AATT	4 cut(s)	115, 286, 487, 806
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	6 cut(s)	136, 200, 328, 469, 504, 684
Mph1103I	ATGCAT	1 cut(s)	486
MroXI	GAANNNNTTC	2 cut(s)	174, 290
MseI	TTAA	3 cut(s)	11, 653, 684
MslI	CAYNNNNRTG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	130, 242, 317
NdeII	GATC	3 cut(s)	66, 447, 761
NlaIII	CATG	2 cut(s)	170, 349
NmuCI	GTSAC	2 cut(s)	82, 572
NsiI	ATGCAT	1 cut(s)	486
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	174, 290
PfeI	GAWTC	4 cut(s)	302, 329, 349, 669
PflFI	GACNNNGTC	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	761
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	61, 873
RsaNI	GTAC	2 cut(s)	60, 872
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	11, 653, 684
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	66, 447, 761
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	804
SetI	ASST	7 cut(s)	75, 192, 207, 217, 605, 634, 726
SfaNI	GCATC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	4 cut(s)	115, 286, 487, 806
SsiI	CCGC	3 cut(s)	468, 642, 775
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	150, 251
StyD4I	CCNGG	1 cut(s)	733
TaaI	ACNGT	2 cut(s)	82, 783
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	5 cut(s)	65, 192, 239, 425, 615
TasI	AATT	4 cut(s)	115, 286, 487, 806
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	4 cut(s)	302, 329, 349, 669
Tru1I	TTAA	3 cut(s)	11, 653, 684
Tru9I	TTAA	3 cut(s)	11, 653, 684
TscAI	CASTG	2 cut(s)	25, 91
TseFI	GTSAC	2 cut(s)	82, 572
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	2 cut(s)	82, 572
TspDTI	ATGAA	8 cut(s)	18, 31, 113, 170, 183, 283, 362, 367
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	2 cut(s)	25, 91
Tth111I	GACNNNGTC	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	560
VneI	GTGCAC	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	425, 548
XmnI	GAANNNNTTC	2 cut(s)	174, 290
XspI	CTAG	2 cut(s)	150, 251
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.