Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005706

Physical Location & Seq

Genomic Coordinates Reverse (-)

15596681 .. 15607767

Gene Structure 11087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G180000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGCGTCGGGTCTCCTCCGCCTTGTGTTATTGGTATCTCTGATTGCTCTGTCTTTGGCCCGTGGTGGAAACGACATGGTTTTGGACACCGATTCCACCCCCAAAACTCCCTCCTGTAACAACCCTTACCTAATGGCAAAGGTTAGGAATTGGGTTAATGGCCGTGAAGCCGAAACTTTTGAAGGGGCTGGTGCAAAGTTTGGGGCTTTATTGCCTTCCGAAAAAGAAAACGCCGTCAAATTGCCTGTTGTTATCTCCAATCCCTTGAATGGCTGTAACGCATCATCTTCAAAGTTATCTGGCGCTATTGCCTTGTCTGCCCGTGGCGATTGTGAGTTCTCCGTAAAGGCAAAAGTTGCACAGTCAGGAGGTGCTAAAGCGCTGGTGGTGATAAATGATGACGAAGGTCTTGCCAAGATGGCTTGTCCTGAGGATAGCACTTCTTTGAACATTTCGATTTTTGTTGTGATGATTCCAAAGTCAAATGGAGAATCTCTCAAGAATTCTATTCAAGATGGAAAGAAAGTGGAGCTTCTATTATATTCCCCCAAGCGTCCAGTGGTGGACTTCTCAGTTGTGTTCTTGTGGCTAATGGCTGTGGGAACAATAATAGTTGCCTCATTTTGGTCAAAGATTACTGCTCCTGAGAAGTCTGATGAGCGCTATAATGAACTGGCAGAAAAGGAATCTAATACTGGAACAGCGAAAGATGATTCTGAGGATGAAGTCATGAATCTTAGCGTGAAGGGTGCTGTGTGTTTTGTCATAACAGCATCCGTTTTTCTGTTGCTACTATATTTCTTTATGTCTACGTGGTTTGTCTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTGAGGGAATGCATAATTGTCTATTAAGCCTGATTTTGAGAACATGGAGAAGTGGTGGACGGAAGACAATAACTTTGCCTCTCCTGGATGAGGTGTCGATTCTCTCACTTGTTGTGCTGGCTTTGTGTGTGGGGTTTGCAGTTTTCTGGGTTGTAACACGACGGGCATCATATTCGTGGGTTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACAGTCTTGCAAATTGCTCGATTACCTAATATCAAGGTTGCTACCGTACTACTTTGTTGTGCATTTGTCTACGACATCTTTTGGGTATTCCTGTCACCCTTAATGTTCAAAGATAGCGTCATGGTTGTGGTTGCTAAAGGTGACAATAGTGGTGAAGGCCTACCAATGCTCTTGAGAATCCCTCGCTTTTTTGACCCCTGGGGTGGTCAGAACATGCTTGGCTTTGGGGATGTTCTGTTTCCGGGTTTGCTTATTGTATTTTCTTACAGGTTTGACAAAGAAAATAAGAAGCATGGAATTAGCGGATATTTCCTTTGGTTGGTAACTGGCTATGGAATCGGACTTGGTTTTACGTACCTGGGTTTATACCTCATGAACGGGAATGGTCAGCCTGCTCTCCTATATCTTGTTCCATGTACACTAGGTGTTACGGTGTTTTTGGGACTGATAAGGCGTGAGCTAAAACAACTTTGGGATTATGGCACGGAGCCAGAGGTATCGCGAAGTACCGTTGAGCCTGCTGTAGAAGGCACTAGATCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

539

Amino Acids

58.74

Weight (kDa)

6.76

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05820 AT1G05820 AT1G05820 AT1G05820 AT2G43070 AT2G43070 AT2G43070 AT2G43070
fragaria_vesca	FvH4_4g11900 FvH4_4g11900 FvH4_4g11900 FvH4_4g11900
malus_domestica	MD04G1030600.v1.1 MD13G1278000.v1.1 MD15G1041300.v1.1
prunus_persica	Prupe.1G180000_v2.0.a1
pyrus_communis	pycom04g02590
rosa_chinensis	RchiOBHm_Chr4g0409391
rosa_laevigata	RLG00000008564
rosa_multiflora	Rmu_sc0001616.1_g000041
rosa_roxburghii	Rroxscaffold_5G00353920
rosa_rugosa	Rorug04G0093500
rosa_samantha	Rh4AG156000 Rh4BG155200 Rh4CG165300 Rh4DG149500
rosa_wichuraiana	Rw0G018710 Rw4G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	809, 1140
AccII	CGCG	1 cut(s)	1573
AciI	CCGC	3 cut(s)	19, 852, 1374
AcoI	YGGCCR	2 cut(s)	160, 1039
AcsI	RAATTY	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	1496
AfaI	GTAC	5 cut(s)	837, 1119, 1427, 1489, 1579
AfeI	AGCGCT	2 cut(s)	381, 662
AfiI	CCNNNNNNNGG	5 cut(s)	269, 624, 946, 1274, 1390
AgsI	TTSAA	6 cut(s)	182, 268, 291, 448, 512, 1180
AjnI	CCWGG	3 cut(s)	939, 1268, 1428
AluBI	AGCT	2 cut(s)	532, 1531
AluI	AGCT	2 cut(s)	532, 1531
Alw26I	GTCTC	1 cut(s)	17
Aor51HI	AGCGCT	2 cut(s)	381, 662
AoxI	GGCC	4 cut(s)	57, 160, 1039, 1228
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	4 cut(s)	913, 945, 1173, 1205
AspLEI	GCGC	3 cut(s)	305, 382, 663
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	1314
AsuHPI	GGTGA	4 cut(s)	400, 1158, 1223, 1235
AxyI	CCTNAGG	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	1041
BbsI	GAAGAC	1 cut(s)	926
BccI	CCATC	2 cut(s)	412, 509
BceAI	ACGGC	2 cut(s)	147, 218
BcgI	CGANNNNNNTGC	6 cut(s)	392, 426, 1011, 1045, 1070, 1104
BciT130I	CCWGG	3 cut(s)	941, 1270, 1430
BcnI	CCSGG	1 cut(s)	1314
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	1493, 1605
BfmI	CTRYAG	1 cut(s)	1593
BfoI	RGCGCY	3 cut(s)	306, 383, 664
BglI	GCCNNNNNGGC	1 cut(s)	419
Bme1390I	CCNGG	4 cut(s)	941, 1270, 1314, 1430
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	1560
BmrFI	CCNGG	4 cut(s)	941, 1270, 1314, 1430
BmsI	GCATC	3 cut(s)	290, 782, 1031
BoxI	GACNNNNGTC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	926
BplI	GAGNNNNNCTC	4 cut(s)	480, 512, 1237, 1269
BpuEI	CTTGAG	2 cut(s)	482, 1264
BpuMI	CCSGG	1 cut(s)	1314
BsaAI	YACGTR	2 cut(s)	813, 1425
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	61, 322, 1268, 1269, 1429
BsaXI	ACNNNNNCTCC	2 cut(s)	895, 925
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 624, 946, 1274, 1390
Bse1I	ACTGG	4 cut(s)	557, 678, 700, 1402
Bse21I	CCTNAGG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	941, 1270, 1430
BseDI	CCNNGG	5 cut(s)	61, 322, 1268, 1269, 1429
BseGI	GGATG	4 cut(s)	727, 773, 949, 1306
BseLI	CCNNNNNNNGG	5 cut(s)	269, 624, 946, 1274, 1390
BseMII	CTCAG	4 cut(s)	420, 585, 636, 708
BseNI	ACTGG	4 cut(s)	557, 678, 700, 1402
BseRI	GAGGAG	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	1573
BshFI	GGCC	4 cut(s)	59, 162, 1041, 1230
BsiSI	CCGG	1 cut(s)	1313
BslFI	GGGAC	1 cut(s)	1527
BslI	CCNNNNNNNGG	5 cut(s)	269, 624, 946, 1274, 1390
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	1527
BsmI	GAATGC	1 cut(s)	870
BsnI	GGCC	4 cut(s)	59, 162, 1041, 1230
Bso31I	GGTCTC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	1487
Bsp143I	GATC	2 cut(s)	831, 1607
Bsp68I	TCGCGA	1 cut(s)	1573
BspACI	CCGC	3 cut(s)	19, 852, 1374
BspANI	GGCC	4 cut(s)	59, 162, 1041, 1230
BspCNI	CTCAG	4 cut(s)	421, 584, 637, 709
BspFNI	CGCG	1 cut(s)	1573
BspHI	TCATGA	2 cut(s)	729, 1443
BspLI	GGNNCC	1 cut(s)	1560
BspTNI	GGTCTC	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	1487
BsrI	ACTGG	4 cut(s)	557, 678, 700, 1402
BssECI	CCNNGG	5 cut(s)	61, 322, 1268, 1269, 1429
BssMI	GATC	2 cut(s)	831, 1607
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	941, 1270, 1430
Bst4CI	ACNGT	5 cut(s)	363, 1075, 1117, 1504, 1582
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	1487
BstBAI	YACGTR	2 cut(s)	813, 1425
BstC8I	GCNNGC	3 cut(s)	975, 1464, 1590
BstDEI	CTNAG	5 cut(s)	429, 571, 645, 717, 737
BstDSI	CCRYGG	2 cut(s)	61, 322
BstENI	CCTNNNNNAGG	1 cut(s)	944
BstF5I	GGATG	4 cut(s)	727, 773, 949, 1306
BstFNI	CGCG	1 cut(s)	1573
BstH2I	RGCGCY	3 cut(s)	306, 383, 664
BstHHI	GCGC	3 cut(s)	305, 382, 663
BstKTI	GATC	2 cut(s)	834, 1610
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	831, 1607
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 356, 419
BstNI	CCWGG	3 cut(s)	941, 1270, 1430
BstNSI	RCATGY	1 cut(s)	1288
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSCI	CCNGG	4 cut(s)	939, 1268, 1312, 1428
BstSFI	CTRYAG	1 cut(s)	1593
BstSNI	TACGTA	1 cut(s)	1425
BstUI	CGCG	1 cut(s)	1573
BstV2I	GAAGAC	1 cut(s)	926
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	4 cut(s)	59, 162, 1041, 1230
BtgI	CCRYGG	2 cut(s)	61, 322
BtsCI	GGATG	4 cut(s)	727, 773, 949, 1306
BtsIMutI	CAGTG	1 cut(s)	564
BtuMI	TCGCGA	1 cut(s)	1573
Cac8I	GCNNGC	3 cut(s)	975, 1464, 1590
CciI	TCATGA	2 cut(s)	729, 1443
CfoI	GCGC	3 cut(s)	305, 382, 663
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	2 cut(s)	542, 1177
Csp6I	GTAC	5 cut(s)	836, 1118, 1426, 1488, 1578
CviAII	CATG	8 cut(s)	76, 730, 900, 1192, 1285, 1364, 1444, 1485
CviQI	GTAC	5 cut(s)	836, 1118, 1426, 1488, 1578
DdeI	CTNAG	5 cut(s)	429, 571, 645, 717, 737
DpnI	GATC	2 cut(s)	833, 1609
DpnII	GATC	2 cut(s)	831, 1607
DraIII	CACNNNGTG	1 cut(s)	1496
EaeI	YGGCCR	2 cut(s)	160, 1039
EciI	GGCGGA	1 cut(s)	8
Eco105I	TACGTA	1 cut(s)	1425
Eco147I	AGGCCT	1 cut(s)	1230
Eco31I	GGTCTC	1 cut(s)	17
Eco47III	AGCGCT	2 cut(s)	381, 662
Eco81I	CCTNAGG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	3 cut(s)	939, 1268, 1428
EcoT22I	ATGCAT	1 cut(s)	870
FaeI	CATG	8 cut(s)	79, 733, 903, 1195, 1288, 1367, 1447, 1488
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 1035, 1067
FaqI	GGGAC	1 cut(s)	1527
FatI	CATG	8 cut(s)	75, 729, 899, 1191, 1284, 1363, 1443, 1484
FblI	GTMKAC	2 cut(s)	809, 1140
FokI	GGATG	4 cut(s)	734, 760, 956, 1313
FspBI	CTAG	2 cut(s)	1493, 1605
GlaI	GCGC	3 cut(s)	304, 381, 662
HaeII	RGCGCY	3 cut(s)	306, 383, 664
HaeIII	GGCC	4 cut(s)	59, 162, 1041, 1230
HapII	CCGG	1 cut(s)	1313
HgaI	GACGC	2 cut(s)	542, 1177
HhaI	GCGC	3 cut(s)	305, 382, 663
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	79, 733, 903, 1195, 1288, 1367, 1447, 1488
Hin6I	GCGC	3 cut(s)	303, 380, 661
HinP1I	GCGC	3 cut(s)	303, 380, 661
HinfI	GANTC	9 cut(s)	92, 472, 491, 686, 713, 733, 955, 1248, 1407
HpaII	CCGG	1 cut(s)	1313
HphI	GGTGA	4 cut(s)	400, 1158, 1223, 1235
Hpy166II	GTNNAC	5 cut(s)	565, 810, 914, 1141, 1490
Hpy188I	TCNGA	7 cut(s)	42, 220, 655, 718, 1281, 1412, 1616
Hpy188III	TCNNGA	9 cut(s)	366, 428, 499, 512, 644, 730, 1243, 1444, 1572
Hpy8I	GTNNAC	5 cut(s)	565, 810, 914, 1141, 1490
Hpy99I	CGWCG	2 cut(s)	10, 1020
HpyAV	CCTTC	6 cut(s)	176, 225, 398, 739, 1220, 1592
HpyCH4III	ACNGT	5 cut(s)	363, 1075, 1117, 1504, 1582
HpyCH4IV	ACGT	2 cut(s)	812, 1424
HpyCH4V	TGCA	7 cut(s)	194, 359, 846, 868, 995, 1081, 1133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 356, 419
HpyF3I	CTNAG	5 cut(s)	429, 571, 645, 717, 737
HpySE526I	ACGT	2 cut(s)	812, 1424
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	79, 733, 903, 1195, 1288, 1367, 1447, 1488
HspAI	GCGC	3 cut(s)	303, 380, 661
Kzo9I	GATC	2 cut(s)	831, 1607
LmnI	GCTCC	3 cut(s)	529, 646, 1558
LweI	GCATC	3 cut(s)	290, 782, 1031
MaeI	CTAG	2 cut(s)	1493, 1605
MaeII	ACGT	2 cut(s)	812, 1424
MaeIII	GTNAC	7 cut(s)	116, 275, 1009, 1164, 1211, 1393, 1498
MalI	GATC	2 cut(s)	833, 1609
MboI	GATC	2 cut(s)	831, 1607
MboII	GAAGA	2 cut(s)	279, 931
MlsI	TGGCCA	1 cut(s)	1041
MluCI	AATT	6 cut(s)	148, 239, 502, 871, 1083, 1368
MluNI	TGGCCA	1 cut(s)	1041
Mox20I	TGGCCA	1 cut(s)	1041
Mph1103I	ATGCAT	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	1041
MseI	TTAA	3 cut(s)	156, 881, 1172
MslI	CAYNNNNRTG	2 cut(s)	1030, 1196
Msp20I	TGGCCA	1 cut(s)	1041
MspI	CCGG	1 cut(s)	1313
MspR9I	CCNGG	4 cut(s)	941, 1270, 1314, 1430
Mva1269I	GAATGC	1 cut(s)	870
MvaI	CCWGG	3 cut(s)	941, 1270, 1430
MvnI	CGCG	1 cut(s)	1573
MwoI	GCNNNNNNNGC	3 cut(s)	317, 356, 419
NciI	CCSGG	1 cut(s)	1314
NdeII	GATC	2 cut(s)	831, 1607
NlaIII	CATG	8 cut(s)	79, 733, 903, 1195, 1288, 1367, 1447, 1488
NlaIV	GGNNCC	1 cut(s)	1560
NmuCI	GTSAC	2 cut(s)	1164, 1211
NruI	TCGCGA	1 cut(s)	1573
NsiI	ATGCAT	1 cut(s)	870
NspI	RCATGY	1 cut(s)	1288
PagI	TCATGA	2 cut(s)	729, 1443
PasI	CCCWGGG	1 cut(s)	1269
PceI	AGGCCT	1 cut(s)	1230
PctI	GAATGC	1 cut(s)	870
PfeI	GAWTC	9 cut(s)	92, 472, 491, 686, 713, 733, 955, 1248, 1407
PfoI	TCCNGGA	1 cut(s)	939
Ppu21I	YACGTR	2 cut(s)	813, 1425
PshAI	GACNNNNGTC	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	939, 1268, 1428
PspGI	CCWGG	3 cut(s)	939, 1268, 1428
PspN4I	GGNNCC	1 cut(s)	1560
PspPI	GGNCC	1 cut(s)	58
RruI	TCGCGA	1 cut(s)	1573
RsaI	GTAC	5 cut(s)	837, 1119, 1427, 1489, 1579
RsaNI	GTAC	5 cut(s)	836, 1118, 1426, 1488, 1578
RseI	CAYNNNNRTG	2 cut(s)	1030, 1196
SaqAI	TTAA	3 cut(s)	156, 881, 1172
Sau3AI	GATC	2 cut(s)	831, 1607
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	4 cut(s)	941, 1270, 1314, 1430
SfaNI	GCATC	3 cut(s)	290, 782, 1031
SfcI	CTRYAG	1 cut(s)	1593
SmiMI	CAYNNNNRTG	2 cut(s)	1030, 1196
SmlI	CTYRAG	2 cut(s)	497, 1243
SmoI	CTYRAG	2 cut(s)	497, 1243
SnaBI	TACGTA	1 cut(s)	1425
Sse9I	AATT	6 cut(s)	148, 239, 502, 871, 1083, 1368
SseBI	AGGCCT	1 cut(s)	1230
SsiI	CCGC	3 cut(s)	19, 852, 1374
SspMI	CTAG	2 cut(s)	1493, 1605
StuI	AGGCCT	1 cut(s)	1230
StyD4I	CCNGG	4 cut(s)	939, 1268, 1312, 1428
TaaI	ACNGT	5 cut(s)	363, 1075, 1117, 1504, 1582
TaiI	ACGT	2 cut(s)	815, 1427
TaqI	TCGA	3 cut(s)	455, 953, 1090
TasI	AATT	6 cut(s)	148, 239, 502, 871, 1083, 1368
TatI	WGTACW	1 cut(s)	1487
TfiI	GAWTC	9 cut(s)	92, 472, 491, 686, 713, 733, 955, 1248, 1407
Tru1I	TTAA	3 cut(s)	156, 881, 1172
Tru9I	TTAA	3 cut(s)	156, 881, 1172
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	2 cut(s)	1164, 1211
Tsp45I	GTSAC	2 cut(s)	1164, 1211
TspDTI	ATGAA	4 cut(s)	684, 738, 746, 1460
TspGWI	ACGGA	4 cut(s)	331, 766, 931, 1571
TspRI	CASTG	1 cut(s)	564
XagI	CCTNNNNNAGG	1 cut(s)	944
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	1288
XcmI	CCANNNNNNNNNTGG	2 cut(s)	556, 1049
XmiI	GTMKAC	2 cut(s)	809, 1140
XspI	CTAG	2 cut(s)	1493, 1605
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.