RLG00000008564

Signal peptide peptidase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
32188435 .. 32197201
8767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008564

Sequence Viewer

Length: 1563 bp
ATGGCGTCGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCACTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCAAGGATTCCACCCCCAACAAACCCTCCTGCAACAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAACGGCGACGAAGGCAAAACTGTTGAGGGCGTTGGTGCCAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTGCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGAGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATAATGAAGAAGACCTTGCCATGATGGGCTGTCCTGAGAACGGCACTTTGGATGTTTCAATATTTGTTGCAATGATTCAAAAGTCAGACGGAGAACATCTCAAGAAATCTGTTGAAGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGGTGGTGGACTATGGAGTTGCATTTTTATGGCTGATGGCTACTGGAACGATAATAACGGCTGCTTATTGGAAAGCGATTACTGTTGTCGAGCAAAATGATGACCCTTACAAAGAACTAGCAGAAAAGGATTCTACTGCGAGAACAGCGAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGTGTGTTTTGTCATAACAGCATCCACATTTCTGTTGCTACTATACTTTTTTATGTCTACTTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCAGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCACTTGTTGTATTGCTTGTCTCTGTGGCATTTGCAATTTTCTGGTGTGTAACGCGGCGGGCATCATATTCATGGATTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACAATCTTGCAAGTCGCTCAATTACCTAACATCAAGGTTGCTACAGTACTACTATGTTGTGCATTTCTCTACGACATCTTTTGGGTATTCGTGTCACCCTTATTCTTTAAAGACAGCGTCATGATTGCGGTTGCTAGAGGTGACAATGCTGGTGGTGAAGCCCTACCAATGCTTTTGAGAGTCCCTAAATTTTTTGACCCCTGGGGTGGTCAGAATATGATTGGCTTTGGGGACATTCTGTTTCCGGGTTTGCTTATTTTATTTACTTTCAGATTTGACAAAGATAACAAGAAGAGTATGATCAATGGATATTTTCTATGGTTGGTAATTGGCTATGGAATGGGGCTTTTTTTTACGTACTTGGGCTTGTACCTCATGAATGGCAATGGTCAGCCTGCACTCCTCTATCTTGTTCCATGCACACTAGGTGTTACAGTGATTTTGGGTTTGATAAGAGGTGAGCTGAAAGAACTTTGGAGTTATGGCACGGTGCTATATCCAACTCTGGGTGATTCTGGACAAGACAATAGATCAGTGAGAGTTTGA

Protein Analysis

521

Amino Acids

57.08

Weight (kDa)

5.92

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 81 - 167 1.2e-14 PA domain
Peptidase_A22B PF04258 241 - 289 1.8e-07 Signal peptide peptidase
Peptidase_A22B PF04258 291 - 501 8.2e-77 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 740
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 812
AccII CGCG 2 cut(s) 330, 961
AciI CCGC 5 cut(s) 330, 855, 961, 964, 1145
AcoI YGGCCR 1 cut(s) 985
AcsI RAATTY 2 cut(s) 203, 1205
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 2 cut(s) 332, 1445
AfaI GTAC 4 cut(s) 840, 1065, 1376, 1388
AfiI CCNNNNNNNGG 5 cut(s) 207, 275, 440, 1223, 1523
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 7 cut(s) 75, 233, 274, 459, 479, 515, 890
AjnI CCWGG 1 cut(s) 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 4 cut(s) 239, 311, 535, 1480
AluI AGCT 4 cut(s) 239, 311, 535, 1480
Alw26I GTCTC 2 cut(s) 901, 931
AlwNI CAGNNNCTG 1 cut(s) 755
AoxI GGCC 1 cut(s) 985
ApeKI GCWGC 2 cut(s) 279, 620
ApoI RAATTY 2 cut(s) 203, 1205
AsuC2I CCSGG 1 cut(s) 1263
AsuHPI GGTGA 8 cut(s) 154, 344, 406, 1104, 1169, 1184, 1487, 1538
BalI TGGCCA 1 cut(s) 987
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 20, 417
BbvI GCAGC 2 cut(s) 266, 607
BccI CCATC 3 cut(s) 418, 512, 589
BceAI ACGGC 3 cut(s) 181, 457, 633
BciT130I CCWGG 1 cut(s) 1219
BclI TGATCA 1 cut(s) 1317
BcnI CCSGG 1 cut(s) 1263
BcoDI GTCTC 2 cut(s) 901, 931
BfaI CTAG 3 cut(s) 677, 1152, 1442
BfmI CTRYAG 1 cut(s) 1059
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 3 cut(s) 280, 621, 962
BlsI GCNGC 3 cut(s) 281, 622, 963
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 2 cut(s) 1219, 1263
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 1219, 1263
BmsI GCATC 2 cut(s) 785, 977
BpiI GAAGAC 2 cut(s) 20, 417
BplI GAGNNNNNCTC 2 cut(s) 483, 515
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 1263
BsaAI YACGTR 1 cut(s) 1374
BsaBI GATNNNNATC 1 cut(s) 1019
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 901
BsaJI CCNNGG 3 cut(s) 732, 1217, 1218
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 5 cut(s) 207, 275, 440, 1223, 1523
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 2 cut(s) 477, 1408
Bse8I GATNNNNATC 1 cut(s) 1019
BseBI CCWGG 1 cut(s) 1219
BseDI CCNNGG 3 cut(s) 732, 1217, 1218
BseGI GGATG 2 cut(s) 457, 776
BseJI GATNNNNATC 1 cut(s) 1019
BseLI CCNNNNNNNGG 5 cut(s) 207, 275, 440, 1223, 1523
BseMI GCAATG 2 cut(s) 477, 1408
BseMII CTCAG 3 cut(s) 311, 426, 711
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 1 cut(s) 1409
BseXI GCAGC 2 cut(s) 266, 607
BsgI GTGCAG 1 cut(s) 1398
Bsh1236I CGCG 2 cut(s) 330, 961
BshFI GGCC 1 cut(s) 987
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 3 cut(s) 372, 560, 1262
BslFI GGGAC 2 cut(s) 1184, 1262
BslI CCNNNNNNNGG 5 cut(s) 207, 275, 440, 1223, 1523
BsmAI GTCTC 2 cut(s) 901, 931
BsmFI GGGAC 2 cut(s) 1184, 1262
BsnI GGCC 1 cut(s) 987
Bso31I GGTCTC 1 cut(s) 901
Bsp143I GATC 3 cut(s) 834, 1317, 1547
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 5 cut(s) 330, 855, 961, 964, 1145
BspANI GGCC 1 cut(s) 987
BspCNI CTCAG 3 cut(s) 310, 427, 712
BspFNI CGCG 2 cut(s) 330, 961
BspHI TCATGA 2 cut(s) 1137, 1392
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 740
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 901
BsrDI GCAATG 2 cut(s) 477, 1408
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 732, 1217, 1218
BssMI GATC 3 cut(s) 834, 1317, 1547
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 1219
Bst4CI ACNGT 5 cut(s) 184, 643, 1063, 1453, 1507
Bst6I CTCTTC 3 cut(s) 298, 885, 1304
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 1374
BstC8I GCNNGC 2 cut(s) 966, 1413
BstDEI CTNAG 4 cut(s) 297, 381, 435, 720
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 2 cut(s) 457, 776
BstFNI CGCG 2 cut(s) 330, 961
BstKTI GATC 3 cut(s) 837, 1320, 1550
BstMAI GTCTC 2 cut(s) 901, 931
BstMBI GATC 3 cut(s) 834, 1317, 1547
BstMWI GCNNNNNNNGC 4 cut(s) 174, 362, 377, 704
BstNI CCWGG 1 cut(s) 1219
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 1217, 1261
BstSFI CTRYAG 1 cut(s) 1059
BstSNI TACGTA 1 cut(s) 1374
BstUI CGCG 2 cut(s) 330, 961
BstV1I GCAGC 2 cut(s) 266, 607
BstV2I GAAGAC 2 cut(s) 20, 417
BsuRI GGCC 1 cut(s) 987
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 2 cut(s) 457, 776
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 1458, 1557
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 966, 1413
CaiI CAGNNNCTG 1 cut(s) 755
CciI TCATGA 2 cut(s) 1137, 1392
CseI GACGC 2 cut(s) 545, 1123
Csp6I GTAC 4 cut(s) 839, 1064, 1375, 1387
CspCI CAANNNNNGTGG 2 cut(s) 1150, 1185
CviAII CATG 7 cut(s) 421, 733, 875, 978, 1138, 1393, 1434
CviQI GTAC 4 cut(s) 839, 1064, 1375, 1387
DdeI CTNAG 4 cut(s) 297, 381, 435, 720
DpnI GATC 3 cut(s) 836, 1319, 1549
DpnII GATC 3 cut(s) 834, 1317, 1547
DraI TTTAAA 1 cut(s) 1126
DraIII CACNNNGTG 2 cut(s) 332, 1445
EaeI YGGCCR 1 cut(s) 985
Eam1104I CTCTTC 3 cut(s) 298, 885, 1304
EarI CTCTTC 3 cut(s) 298, 885, 1304
Eco105I TACGTA 1 cut(s) 1374
Eco130I CCWWGG 1 cut(s) 732
Eco31I GGTCTC 1 cut(s) 901
EcoRII CCWGG 1 cut(s) 1217
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 7 cut(s) 424, 736, 878, 981, 1141, 1396, 1437
FalI AAGNNNNNCTT 6 cut(s) 399, 431, 519, 551, 981, 1013
FaqI GGGAC 2 cut(s) 1184, 1262
FatI CATG 7 cut(s) 420, 732, 874, 977, 1137, 1392, 1433
FauI CCCGC 1 cut(s) 957
FbaI TGATCA 1 cut(s) 1317
FblI GTMKAC 1 cut(s) 812
Fnu4HI GCNGC 3 cut(s) 280, 621, 962
FokI GGATG 2 cut(s) 464, 763
Fsp4HI GCNGC 3 cut(s) 280, 621, 962
FspBI CTAG 3 cut(s) 677, 1152, 1442
GluI GCNGC 3 cut(s) 280, 621, 962
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 987
HapII CCGG 3 cut(s) 372, 560, 1262
HgaI GACGC 2 cut(s) 545, 1123
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 424, 736, 878, 981, 1141, 1396, 1437
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 6 cut(s) 98, 475, 689, 716, 1197, 1529
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 3 cut(s) 372, 560, 1262
HphI GGTGA 8 cut(s) 154, 344, 406, 1104, 1169, 1184, 1487, 1538
Hpy166II GTNNAC 4 cut(s) 163, 324, 568, 813
Hpy188I TCNGA 5 cut(s) 487, 721, 864, 1230, 1289
Hpy188III TCNNGA 6 cut(s) 306, 434, 502, 1138, 1393, 1533
Hpy8I GTNNAC 4 cut(s) 163, 324, 568, 813
Hpy99I CGWCG 4 cut(s) 10, 13, 16, 173
HpyAV CCTTC 5 cut(s) 139, 167, 231, 280, 859
HpyCH4III ACNGT 5 cut(s) 184, 643, 1063, 1453, 1507
HpyCH4IV ACGT 1 cut(s) 1373
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 362, 377, 704
HpyF3I CTNAG 4 cut(s) 297, 381, 435, 720
HpySE526I ACGT 1 cut(s) 1373
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 424, 736, 878, 981, 1141, 1396, 1437
Ksp22I TGATCA 1 cut(s) 1317
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 834, 1317, 1547
LmnI GCTCC 3 cut(s) 287, 308, 532
Lsp1109I GCAGC 2 cut(s) 266, 607
LweI GCATC 2 cut(s) 785, 977
MaeI CTAG 3 cut(s) 677, 1152, 1442
MaeII ACGT 1 cut(s) 1373
MaeIII GTNAC 5 cut(s) 338, 955, 1110, 1157, 1447
MalI GATC 3 cut(s) 836, 1319, 1549
MboI GATC 3 cut(s) 834, 1317, 1547
MboII GAAGA 8 cut(s) 20, 285, 419, 422, 527, 725, 902, 1321
MlsI TGGCCA 1 cut(s) 987
MluCI AATT 7 cut(s) 70, 203, 245, 942, 1037, 1205, 1344
MluNI TGGCCA 1 cut(s) 987
MlyI GAGTC 1 cut(s) 1206
MmeI TCCRAC 1 cut(s) 1541
Mox20I TGGCCA 1 cut(s) 987
MscI TGGCCA 1 cut(s) 987
MseI TTAA 5 cut(s) 150, 162, 351, 741, 1125
MslI CAYNNNNRTG 2 cut(s) 586, 976
Msp20I TGGCCA 1 cut(s) 987
MspI CCGG 3 cut(s) 372, 560, 1262
MspR9I CCNGG 2 cut(s) 1219, 1263
MvaI CCWGG 1 cut(s) 1219
MvnI CGCG 2 cut(s) 330, 961
MwoI GCNNNNNNNGC 4 cut(s) 174, 362, 377, 704
NciI CCSGG 1 cut(s) 1263
NcoI CCATGG 1 cut(s) 732
NdeII GATC 3 cut(s) 834, 1317, 1547
NlaIII CATG 7 cut(s) 424, 736, 878, 981, 1141, 1396, 1437
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 3 cut(s) 338, 1110, 1157
NspI RCATGY 1 cut(s) 878
PagI TCATGA 2 cut(s) 1137, 1392
PaqCI CACCTGC 1 cut(s) 740
PasI CCCWGGG 1 cut(s) 1218
PciI ACATGT 1 cut(s) 874
PfeI GAWTC 5 cut(s) 98, 475, 689, 716, 1529
PflFI GACNNNGTC 1 cut(s) 1133
PkrI GCNGC 3 cut(s) 281, 622, 963
PleI GAGTC 1 cut(s) 1205
PpsI GAGTC 1 cut(s) 1205
Ppu21I YACGTR 1 cut(s) 1374
PscI ACATGT 1 cut(s) 874
Psp6I CCWGG 1 cut(s) 1217
PspGI CCWGG 1 cut(s) 1217
PspN4I GGNNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 755
PsyI GACNNNGTC 1 cut(s) 1133
RsaI GTAC 4 cut(s) 840, 1065, 1376, 1388
RsaNI GTAC 4 cut(s) 839, 1064, 1375, 1387
RseI CAYNNNNRTG 2 cut(s) 586, 976
SaqAI TTAA 5 cut(s) 150, 162, 351, 741, 1125
SatI GCNGC 3 cut(s) 280, 621, 962
Sau3AI GATC 3 cut(s) 834, 1317, 1547
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 1 cut(s) 1206
ScrFI CCNGG 2 cut(s) 1219, 1263
SfaNI GCATC 2 cut(s) 785, 977
SfcI CTRYAG 1 cut(s) 1059
SmiMI CAYNNNNRTG 2 cut(s) 586, 976
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SnaBI TACGTA 1 cut(s) 1374
Sse9I AATT 7 cut(s) 70, 203, 245, 942, 1037, 1205, 1344
SsiI CCGC 5 cut(s) 330, 855, 961, 964, 1145
SspI AATATT 1 cut(s) 462
SspMI CTAG 3 cut(s) 677, 1152, 1442
StyD4I CCNGG 2 cut(s) 1217, 1261
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 5 cut(s) 184, 643, 1063, 1453, 1507
TaiI ACGT 1 cut(s) 1376
TaqI TCGA 1 cut(s) 648
TasI AATT 7 cut(s) 70, 203, 245, 942, 1037, 1205, 1344
TatI WGTACW 1 cut(s) 1063
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 5 cut(s) 98, 475, 689, 716, 1529
Tru1I TTAA 5 cut(s) 150, 162, 351, 741, 1125
Tru9I TTAA 5 cut(s) 150, 162, 351, 741, 1125
TscAI CASTG 3 cut(s) 55, 1458, 1557
TseFI GTSAC 3 cut(s) 338, 1110, 1157
TseI GCWGC 2 cut(s) 279, 620
Tsp45I GTSAC 3 cut(s) 338, 1110, 1157
TspDTI ATGAA 4 cut(s) 413, 420, 966, 1409
TspGWI ACGGA 3 cut(s) 14, 337, 504
TspRI CASTG 3 cut(s) 55, 1458, 1557
Tth111I GACNNNGTC 1 cut(s) 1133
XapI RAATTY 2 cut(s) 203, 1205
XceI RCATGY 1 cut(s) 878
XcmI CCANNNNNNNNNTGG 2 cut(s) 559, 995
XmiI GTMKAC 1 cut(s) 812
XspI CTAG 3 cut(s) 677, 1152, 1442
ZrmI AGTACT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.