Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005706

Physical Location & Seq

Genomic Coordinates Forward (+)

36447078 .. 36456926

Gene Structure 9849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG165300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGCGTCGTCGTCGTCGTCGGTTTTTCTCCGTCTTCTGCTTCTGTTATCTCTCACTGCTCTATCGTTCGCCGACAATTCAAAAGACTACATCTTGGGCAAGGATTCCACCCCCAACAAACCCTCCTGCAACAACCCTTACCTAATGGTGAAGGTTAAAAGGTGGGTTAATGGTGACCAAGGCAAAACTGTTGAGGGGGTTGGTGCCAAATTTGGGGCTTTGTTGCCTTCTAAACTTGAAAAAGCTGTCAAATTTCCTGTTGTTCTCTCCAAACCCTTCAATGGCTGCTCCAAATCCTCTTCTCAGTTATCTGGAGCTATTGCCTTGTCCACACGCGGTGATTGTGACTTCTCCGTTAAGGCACAAGTTGCACAAGCCGGAGGTGCTAAGGGGTTGTTGGTGATGAATAATAAAGAAGACCTTGCCATGATGGGCTGTCCTGCGAACGGCACTTTGGATGTTTCAATATTTGTTGCAATGATTCAAAAGTCAGACGGAGAACATCTCAAGAAATCTGTTGAAGATGGAAATAAAGTGGAGCTTCTATTATATTCTCCCAAGCGTCCGGTGGTGGACTTTGGAGTTGCGTTTTTATGGCTGATGGCTGTTGGAACGATAACAATGGCCTCATATTGGAAAACGATTACTGTTGTCGAGCAAAATGATGACCCTTACAAAGAACTAGCAGAAAAGGATTCTATGAGAACAGCGAAAGAAGATTCTGAGGACGAAACCATGGTTCTTAATGTGGCAGGTGCTGTGTGTTTTGTCATAACAGCATCCACTTTTCTGTTGCTACTATACTTTTTTATGTCTACGTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCAGGGAATGCATAATGTTATCTCAAGCCTGATTTTGAGAACATGGAAAAGCGGTGGACGGAAGGGAATACATGTGCCTATTTTTGAAGAGGTCTCTTATCTCTCGCTTGTTATATTGCTCGTCTCTGTGGCATTTGCAATTTTCTGGTGTGTAACGCGGCAGGAATCATATTCCTGGATTGGCCAAGATGTTCTTGGTATCTGCTTGATGATAACAGTCTTGCAAATCGCTCAATTACCTAACATCAAGGTACCCACTCTTTTGTTATTTAAGTACCATGTGATGCGATTGTCTCATAATGTTAACATGTCTCAGGTTGCTACAGTACTACTATGTTGTGCATTTATCTACGACATCTTTTGGGTATTCGTGTCACCCTTATTCTTTAAAGACAGCGTCATGATTGCGGTTGCTAGAGGTGACAATGCTGGTGGTGAAGCCCTACCAATGCTTTTGAGAGTCCCTAAATTTTTTGACCCCTGGGGTGGTCAGAATATGATTGGCTTTGGGGACATTCTGTTTCCGGGTTTGCTTATTTTATTTACTTTCAGGTATTGTTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

476

Amino Acids

52.47

Weight (kDa)

8.38

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	83 - 169	2.1e-14	PA domain
Peptidase_A22B	PF04258	242 - 378	7.8e-29	Signal peptide peptidase
Peptidase_A22B	PF04258	390 - 473	3e-29	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05820 AT1G05820 AT1G05820 AT1G05820 AT2G43070 AT2G43070 AT2G43070 AT2G43070
fragaria_vesca	FvH4_4g11900 FvH4_4g11900 FvH4_4g11900 FvH4_4g11900
malus_domestica	MD04G1030600.v1.1 MD13G1278000.v1.1 MD15G1041300.v1.1
prunus_persica	Prupe.1G180000_v2.0.a1
pyrus_communis	pycom04g02590
rosa_chinensis	RchiOBHm_Chr4g0409391
rosa_laevigata	RLG00000008564
rosa_multiflora	Rmu_sc0001616.1_g000041
rosa_roxburghii	Rroxscaffold_5G00353920
rosa_rugosa	Rorug04G0093500
rosa_samantha	Rh4AG156000 Rh4BG155200 Rh4CG165300 Rh4DG149500
rosa_wichuraiana	Rw0G018710 Rw4G012770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	743
Acc65I	GGTACC	1 cut(s)	1114
AccB1I	GGYRCC	2 cut(s)	203, 1114
AccI	GTMKAC	1 cut(s)	815
AccII	CGCG	2 cut(s)	336, 1021
AciI	CCGC	5 cut(s)	336, 858, 915, 1021, 1271
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	3 cut(s)	209, 251, 1331
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	843, 1116, 1139, 1191
AfiI	CCNNNNNNNGG	5 cut(s)	213, 281, 446, 633, 1349
AflIII	ACRYGT	2 cut(s)	934, 1170
AgsI	TTSAA	7 cut(s)	81, 239, 280, 465, 485, 521, 950
AjnI	CCWGG	2 cut(s)	1037, 1343
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	3 cut(s)	245, 317, 541
AluI	AGCT	3 cut(s)	245, 317, 541
Alw26I	GTCTC	4 cut(s)	961, 991, 1161, 1179
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	624, 1045
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	3 cut(s)	209, 251, 1331
Asp718I	GGTACC	1 cut(s)	1114
AsuC2I	CCSGG	1 cut(s)	1389
AsuHPI	GGTGA	7 cut(s)	160, 185, 350, 412, 1230, 1295, 1310
BalI	TGGCCA	1 cut(s)	1047
BanI	GGYRCC	2 cut(s)	203, 1114
BbsI	GAAGAC	2 cut(s)	26, 423
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	3 cut(s)	424, 518, 595
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	1039, 1345
BcnI	CCSGG	1 cut(s)	1389
BcoDI	GTCTC	4 cut(s)	961, 991, 1161, 1179
BfaI	CTAG	2 cut(s)	683, 1278
BfmI	CTRYAG	1 cut(s)	1185
BfuAI	ACCTGC	1 cut(s)	743
BisI	GCNGC	2 cut(s)	286, 1022
BlsI	GCNGC	2 cut(s)	287, 1023
BmcAI	AGTACT	1 cut(s)	1191
Bme1390I	CCNGG	3 cut(s)	1039, 1345, 1389
BmiI	GGNNCC	2 cut(s)	205, 1116
BmrFI	CCNGG	3 cut(s)	1039, 1345, 1389
BmsI	GCATC	2 cut(s)	788, 1137
BpiI	GAAGAC	2 cut(s)	26, 423
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	2 cut(s)	491, 871
BpuMI	CCSGG	1 cut(s)	1389
BsaAI	YACGTR	1 cut(s)	819
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	4 cut(s)	178, 735, 1343, 1344
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	213, 281, 446, 633, 1349
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	1039, 1345
BseDI	CCNNGG	4 cut(s)	178, 735, 1343, 1344
BseGI	GGATG	2 cut(s)	463, 779
BseLI	CCNNNNNNNGG	5 cut(s)	213, 281, 446, 633, 1349
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	317, 714, 1190
BseXI	GCAGC	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	336, 1021
BshFI	GGCC	2 cut(s)	626, 1047
BshNI	GGYRCC	2 cut(s)	203, 1114
BsiSI	CCGG	3 cut(s)	378, 566, 1388
BslFI	GGGAC	2 cut(s)	1310, 1388
BslI	CCNNNNNNNGG	5 cut(s)	213, 281, 446, 633, 1349
BsmAI	GTCTC	4 cut(s)	961, 991, 1161, 1179
BsmBI	CGTCTC	1 cut(s)	991
BsmFI	GGGAC	2 cut(s)	1310, 1388
BsmI	GAATGC	1 cut(s)	876
BsnI	GGCC	2 cut(s)	626, 1047
Bso31I	GGTCTC	1 cut(s)	961
Bsp143I	GATC	1 cut(s)	837
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	5 cut(s)	336, 858, 915, 1021, 1271
BspANI	GGCC	2 cut(s)	626, 1047
BspCNI	CTCAG	3 cut(s)	316, 715, 1189
BspFNI	CGCG	2 cut(s)	336, 1021
BspHI	TCATGA	1 cut(s)	1263
BspLI	GGNNCC	2 cut(s)	205, 1116
BspMI	ACCTGC	1 cut(s)	743
BspT107I	GGYRCC	2 cut(s)	203, 1114
BspTNI	GGTCTC	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	483
BssECI	CCNNGG	4 cut(s)	178, 735, 1343, 1344
BssMI	GATC	1 cut(s)	837
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	178, 735
Bst2UI	CCWGG	2 cut(s)	1039, 1345
Bst4CI	ACNGT	4 cut(s)	190, 649, 1081, 1189
Bst6I	CTCTTC	2 cut(s)	304, 945
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	819
BstDEI	CTNAG	4 cut(s)	303, 387, 723, 1176
BstDSI	CCRYGG	1 cut(s)	735
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	463, 779
BstFNI	CGCG	2 cut(s)	336, 1021
BstKTI	GATC	1 cut(s)	840
BstMAI	GTCTC	4 cut(s)	961, 991, 1161, 1179
BstMBI	GATC	1 cut(s)	837
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 383
BstNI	CCWGG	2 cut(s)	1039, 1345
BstNSI	RCATGY	2 cut(s)	938, 1174
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	1037, 1343, 1387
BstSFI	CTRYAG	1 cut(s)	1185
BstUI	CGCG	2 cut(s)	336, 1021
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	2 cut(s)	26, 423
BsuRI	GGCC	2 cut(s)	626, 1047
BtgI	CCRYGG	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	463, 779
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	743
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	1 cut(s)	1263
CseI	GACGC	2 cut(s)	551, 1249
Csp6I	GTAC	4 cut(s)	842, 1115, 1138, 1190
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviAII	CATG	7 cut(s)	427, 736, 906, 935, 1142, 1171, 1264
CviQI	GTAC	4 cut(s)	842, 1115, 1138, 1190
DdeI	CTNAG	4 cut(s)	303, 387, 723, 1176
DpnI	GATC	1 cut(s)	839
DpnII	GATC	1 cut(s)	837
DraI	TTTAAA	1 cut(s)	1252
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	304, 945
EarI	CTCTTC	2 cut(s)	304, 945
Eco130I	CCWWGG	2 cut(s)	178, 735
Eco31I	GGTCTC	1 cut(s)	961
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	1037, 1343
EcoT14I	CCWWGG	2 cut(s)	178, 735
EcoT22I	ATGCAT	1 cut(s)	876
ErhI	CCWWGG	2 cut(s)	178, 735
Esp3I	CGTCTC	1 cut(s)	991
FaeI	CATG	7 cut(s)	430, 739, 909, 938, 1145, 1174, 1267
FalI	AAGNNNNNCTT	6 cut(s)	405, 437, 525, 557, 1041, 1073
FaqI	GGGAC	2 cut(s)	1310, 1388
FatI	CATG	7 cut(s)	426, 735, 905, 934, 1141, 1170, 1263
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	2 cut(s)	286, 1022
FokI	GGATG	2 cut(s)	470, 766
Fsp4HI	GCNGC	2 cut(s)	286, 1022
FspBI	CTAG	2 cut(s)	683, 1278
GluI	GCNGC	2 cut(s)	286, 1022
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	626, 1047
HapII	CCGG	3 cut(s)	378, 566, 1388
HgaI	GACGC	2 cut(s)	551, 1249
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	430, 739, 909, 938, 1145, 1174, 1267
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HinfI	GANTC	6 cut(s)	104, 481, 695, 719, 1028, 1323
HpaI	GTTAAC	1 cut(s)	1168
HpaII	CCGG	3 cut(s)	378, 566, 1388
HphI	GGTGA	7 cut(s)	160, 185, 350, 412, 1230, 1295, 1310
Hpy166II	GTNNAC	5 cut(s)	330, 574, 816, 920, 1168
Hpy188I	TCNGA	3 cut(s)	493, 724, 1356
Hpy188III	TCNNGA	3 cut(s)	312, 508, 1264
Hpy8I	GTNNAC	5 cut(s)	330, 574, 816, 920, 1168
Hpy99I	CGWCG	5 cut(s)	10, 13, 16, 19, 22
HpyAV	CCTTC	4 cut(s)	145, 237, 286, 919
HpyCH4III	ACNGT	4 cut(s)	190, 649, 1081, 1189
HpyCH4IV	ACGT	1 cut(s)	818
HpyCH4V	TGCA	8 cut(s)	129, 371, 476, 852, 874, 1001, 1087, 1205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 383
HpyF3I	CTNAG	4 cut(s)	303, 387, 723, 1176
HpySE526I	ACGT	1 cut(s)	818
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	430, 739, 909, 938, 1145, 1174, 1267
KpnI	GGTACC	1 cut(s)	1118
KspAI	GTTAAC	1 cut(s)	1168
Kzo9I	GATC	1 cut(s)	837
LmnI	GCTCC	3 cut(s)	293, 314, 538
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	2 cut(s)	788, 1137
MaeI	CTAG	2 cut(s)	683, 1278
MaeII	ACGT	1 cut(s)	818
MaeIII	GTNAC	5 cut(s)	173, 344, 1015, 1236, 1283
MalI	GATC	1 cut(s)	839
MboI	GATC	1 cut(s)	837
MboII	GAAGA	6 cut(s)	26, 291, 428, 533, 728, 962
MlsI	TGGCCA	1 cut(s)	1047
MluCI	AATT	6 cut(s)	76, 209, 251, 1002, 1097, 1331
MluNI	TGGCCA	1 cut(s)	1047
MlyI	GAGTC	1 cut(s)	1332
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	8 cut(s)	133, 187, 307, 374, 637, 718, 946, 1274
Mox20I	TGGCCA	1 cut(s)	1047
Mph1103I	ATGCAT	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	1047
MseI	TTAA	7 cut(s)	156, 168, 357, 744, 1134, 1167, 1251
Msp20I	TGGCCA	1 cut(s)	1047
MspI	CCGG	3 cut(s)	378, 566, 1388
MspR9I	CCNGG	3 cut(s)	1039, 1345, 1389
Mva1269I	GAATGC	1 cut(s)	876
MvaI	CCWGG	2 cut(s)	1039, 1345
MvnI	CGCG	2 cut(s)	336, 1021
MwoI	GCNNNNNNNGC	2 cut(s)	368, 383
NciI	CCSGG	1 cut(s)	1389
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	1 cut(s)	837
NlaIII	CATG	7 cut(s)	430, 739, 909, 938, 1145, 1174, 1267
NlaIV	GGNNCC	2 cut(s)	205, 1116
NmuCI	GTSAC	4 cut(s)	173, 344, 1236, 1283
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	2 cut(s)	938, 1174
PagI	TCATGA	1 cut(s)	1263
PaqCI	CACCTGC	1 cut(s)	743
PasI	CCCWGGG	1 cut(s)	1344
PciI	ACATGT	2 cut(s)	934, 1170
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	876
PfeI	GAWTC	5 cut(s)	104, 481, 695, 719, 1028
PflFI	GACNNNGTC	1 cut(s)	1259
PfoI	TCCNGGA	1 cut(s)	1037
PkrI	GCNGC	2 cut(s)	287, 1023
PleI	GAGTC	1 cut(s)	1331
PpsI	GAGTC	1 cut(s)	1331
Ppu21I	YACGTR	1 cut(s)	819
PscI	ACATGT	2 cut(s)	934, 1170
Psp6I	CCWGG	2 cut(s)	1037, 1343
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	1037, 1343
PspN4I	GGNNCC	2 cut(s)	205, 1116
PstNI	CAGNNNCTG	1 cut(s)	758
PsyI	GACNNNGTC	1 cut(s)	1259
RsaI	GTAC	4 cut(s)	843, 1116, 1139, 1191
RsaNI	GTAC	4 cut(s)	842, 1115, 1138, 1190
SaqAI	TTAA	7 cut(s)	156, 168, 357, 744, 1134, 1167, 1251
SatI	GCNGC	2 cut(s)	286, 1022
Sau3AI	GATC	1 cut(s)	837
ScaI	AGTACT	1 cut(s)	1191
SchI	GAGTC	1 cut(s)	1332
ScrFI	CCNGG	3 cut(s)	1039, 1345, 1389
SfaNI	GCATC	2 cut(s)	788, 1137
SfcI	CTRYAG	1 cut(s)	1185
SmlI	CTYRAG	2 cut(s)	506, 886
SmoI	CTYRAG	2 cut(s)	506, 886
Sse9I	AATT	6 cut(s)	76, 209, 251, 1002, 1097, 1331
SsiI	CCGC	5 cut(s)	336, 858, 915, 1021, 1271
SspI	AATATT	1 cut(s)	468
SspMI	CTAG	2 cut(s)	683, 1278
StyD4I	CCNGG	3 cut(s)	1037, 1343, 1387
StyI	CCWWGG	2 cut(s)	178, 735
TaaI	ACNGT	4 cut(s)	190, 649, 1081, 1189
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	1 cut(s)	654
TasI	AATT	6 cut(s)	76, 209, 251, 1002, 1097, 1331
TatI	WGTACW	1 cut(s)	1189
TauI	GCSGC	1 cut(s)	1024
TfiI	GAWTC	5 cut(s)	104, 481, 695, 719, 1028
Tru1I	TTAA	7 cut(s)	156, 168, 357, 744, 1134, 1167, 1251
Tru9I	TTAA	7 cut(s)	156, 168, 357, 744, 1134, 1167, 1251
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	4 cut(s)	173, 344, 1236, 1283
TseI	GCWGC	1 cut(s)	285
Tsp45I	GTSAC	4 cut(s)	173, 344, 1236, 1283
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	4 cut(s)	20, 343, 510, 937
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	1259
XapI	RAATTY	3 cut(s)	209, 251, 1331
XceI	RCATGY	2 cut(s)	938, 1174
XcmI	CCANNNNNNNNNTGG	2 cut(s)	565, 1055
XmiI	GTMKAC	1 cut(s)	815
XspI	CTAG	2 cut(s)	683, 1278
ZrmI	AGTACT	1 cut(s)	1191
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.