AT1G05870

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001712
Physical Location & Seq
Reverse (-)
1771385 .. 1773385
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05870.9

Sequence Viewer

Length: 570 bp
ATGGGTTGTGTTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAATGCCTTTGAATCCGTCGATGAATCCGGAATCAACGAAGCCTGGGTTGAGATCTCCAGCCGCAGATCATTTGTCGCCGGCGAAGGTAGTCGGAAGAAGCTAGAGAGGAAGAAGAGCCAAGTGTTACTGGAAGGTTACGTTGAGACTGCTTCTTCTTCCTCGGTGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCAAAATAAATCACCGGAAACTTCGTCGGTGGAAGATTGTCCGTCGCCTCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

189

Amino Acids

20.81

Weight (kDa)

4.53

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 84 - 139 1.3e-24 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccIII TCCGGA 2 cut(s) 74, 499
AciI CCGC 2 cut(s) 109, 453
AclWI GGATC 3 cut(s) 23, 234, 313
AfaI GTAC 1 cut(s) 550
AgsI TTSAA 2 cut(s) 59, 366
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 6 cut(s) 148, 309, 328, 355, 515, 567
AluI AGCT 6 cut(s) 148, 309, 328, 355, 515, 567
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 23, 234, 313
Aor13HI TCCGGA 2 cut(s) 74, 499
ApeKI GCWGC 2 cut(s) 15, 564
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 396, 442, 503
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 2
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 91
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 4 cut(s) 149, 293, 483, 516
BfuAI ACCTGC 1 cut(s) 352
BglII AGATCT 4 cut(s) 99, 271, 289, 477
BisI GCNGC 3 cut(s) 16, 109, 565
BlsI GCNGC 3 cut(s) 17, 110, 566
Bme1390I CCNGG 2 cut(s) 91, 489
BmrFI CCNGG 2 cut(s) 91, 489
BmrI ACTGGG 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 538
BpmI CTGGAG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 32, 90, 207
BsaWI WCCGGW 3 cut(s) 74, 406, 499
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 180, 450, 533
BseAI TCCGGA 2 cut(s) 74, 499
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 3 cut(s) 32, 90, 207
BseGI GGATG 3 cut(s) 220, 262, 508
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 180, 450, 533
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 1 cut(s) 2
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 5 cut(s) 75, 126, 407, 489, 500
BslFI GGGAC 1 cut(s) 471
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 330, 535
Bsp13I TCCGGA 2 cut(s) 74, 499
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 109, 453
BspCNI CTCAG 1 cut(s) 316
BspEI TCCGGA 2 cut(s) 74, 499
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 3 cut(s) 23, 234, 313
BspQI GCTCTTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 3 cut(s) 180, 450, 533
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 32, 90, 207
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 3 cut(s) 275, 324, 382
BstDSI CCRYGG 1 cut(s) 32
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 3 cut(s) 220, 262, 508
BstMAI GTCTC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 91
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 89, 487
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 2
BstX2I RGATCY 7 cut(s) 28, 99, 239, 271, 289, 318, 477
BstYI RGATCY 7 cut(s) 28, 99, 239, 271, 289, 318, 477
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 220, 262, 508
BtsIMutI CAGTG 1 cut(s) 443
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 125
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 1 cut(s) 33
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 3 cut(s) 275, 324, 382
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 328
Eco91I GGTNACC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 328
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FaqI GGGAC 1 cut(s) 471
FatI CATG 1 cut(s) 32
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 16, 109, 565
FokI GGATG 3 cut(s) 227, 269, 515
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 3 cut(s) 16, 109, 565
FspBI CTAG 4 cut(s) 149, 293, 483, 516
GluI GCNGC 3 cut(s) 16, 109, 565
GsuI CTGGAG 1 cut(s) 88
HapII CCGG 5 cut(s) 75, 126, 407, 489, 500
Hin1II CATG 1 cut(s) 36
HinfI GANTC 3 cut(s) 59, 71, 78
HpaII CCGG 5 cut(s) 75, 126, 407, 489, 500
HphI GGTGA 3 cut(s) 396, 442, 503
Hpy188I TCNGA 4 cut(s) 28, 141, 234, 462
Hpy188III TCNNGA 2 cut(s) 75, 500
Hpy99I CGWCG 4 cut(s) 68, 317, 421, 439
HpyAV CCTTC 2 cut(s) 125, 173
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 18, 333, 564
HpyF3I CTNAG 3 cut(s) 275, 324, 382
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 36
Kpn2I TCCGGA 2 cut(s) 74, 499
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 1 cut(s) 2
MaeI CTAG 4 cut(s) 149, 293, 483, 516
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 171, 182, 448
MboII GAAGA 8 cut(s) 154, 169, 172, 192, 195, 281, 437, 487
MfeI CAATTG 2 cut(s) 469, 557
MflI RGATCY 7 cut(s) 28, 99, 239, 271, 289, 318, 477
MhlI GDGCHC 2 cut(s) 330, 535
MluCI AATT 2 cut(s) 469, 557
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 147, 217, 272, 275, 450
MreI CGCCGGCG 1 cut(s) 125
MroI TCCGGA 2 cut(s) 74, 499
MroNI GCCGGC 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 5 cut(s) 75, 126, 407, 489, 500
MspR9I CCNGG 2 cut(s) 91, 489
MunI CAATTG 2 cut(s) 469, 557
MvaI CCWGG 1 cut(s) 91
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 489
NcoI CCATGG 1 cut(s) 32
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 59, 71, 78
PkrI GCNGC 3 cut(s) 17, 110, 566
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 89
PsuI RGATCY 7 cut(s) 28, 99, 239, 271, 289, 318, 477
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 155
SatI GCNGC 3 cut(s) 16, 109, 565
ScrFI CCNGG 2 cut(s) 91, 489
SduI GDGCHC 2 cut(s) 330, 535
SgrAI CRCCGGYG 1 cut(s) 125
Sse9I AATT 2 cut(s) 469, 557
SsiI CCGC 2 cut(s) 109, 453
SspMI CTAG 4 cut(s) 149, 293, 483, 516
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 89, 487
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 66, 267
TasI AATT 2 cut(s) 469, 557
TatI WGTACW 1 cut(s) 548
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 3 cut(s) 59, 71, 78
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 15, 564
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 3 cut(s) 52, 269, 423
TspRI CASTG 1 cut(s) 450
XspI CTAG 4 cut(s) 149, 293, 483, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.