Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001712

Physical Location & Seq

Genomic Coordinates Forward (+)

13436485 .. 13438011

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTTGTATTCACATCGAATCATCACATCCACCTGCATGGAAGACACACTCTGTCCAAGAGAACAAACCAGCAAATGCTGATGATATATCGAACACAACCTTACCAGAACACCACGACGGTGGCGACGGGGGAATCCAAGAAACGTGGGCCGCGATTGGAGATTCTGGCGGCAGAGGAGGAGGCTATTTCGCCGGAGAGAGTAGGAAGAAGCTGGAGAAGAAGAAGAGCCAAGTGTTGCTTGAGGGATACGCGTTGGATGATCAAGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGATGAGATCCCTGAGCTTTGCAACACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAACCACCACAAGTCCCAGGAGGAAGATGATTCGTCGCCACCACCGACCACGACCGCTCCAATTGCAAATTGGAAGATCTCTAGCCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGGTTGTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

202

Amino Acids

22.17

Weight (kDa)

4.69

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1685	PF07939	98 - 154	3.3e-25	Protein of unknown function (DUF1685)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT2G31560 AT2G31560 AT2G31560 AT2G43340
fragaria_vesca	FvH4_4g11250
prunus_persica	Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1
pyrus_communis	pycom04g03180
rosa_chinensis	RchiOBHm_Chr0c40g0503391 RchiOBHm_Chr4g0407341
rosa_laevigata	RLG00000008732
rosa_multiflora	Rmu_co8278391.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351890
rosa_rugosa	Rorug04G0078800 Rorug04G0078800 Rorug04G0078800 Rorug04G0287500 Rorug06G0154700 Rorug07G0147500
rosa_samantha	Rh4AG143600 Rh4BG141300 Rh4CG149900 Rh4DG137500 Rh6BG301800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	497
AccII	CGCG	2 cut(s)	155, 254
AciI	CCGC	3 cut(s)	153, 171, 495
AclWI	GGATC	2 cut(s)	355, 530
AfaI	GTAC	1 cut(s)	594
AflIII	ACRYGT	1 cut(s)	252
AjnI	CCWGG	2 cut(s)	456, 526
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	6 cut(s)	214, 316, 370, 397, 554, 606
AluI	AGCT	6 cut(s)	214, 316, 370, 397, 554, 606
AlwI	GGATC	2 cut(s)	355, 530
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	458, 528
BciVI	GTATCC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	3 cut(s)	335, 522, 555
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	2 cut(s)	331, 516
BisI	GCNGC	3 cut(s)	153, 172, 604
BlsI	GCNGC	3 cut(s)	154, 173, 605
Bme1390I	CCNGG	2 cut(s)	458, 528
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	458, 528
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	263, 329
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	456, 526
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	458, 528
BseDI	CCNNGG	2 cut(s)	456, 526
BseGI	GGATG	3 cut(s)	28, 265, 304
BseJI	GATNNNNATC	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	192, 195, 326
BseSI	GKGCMC	1 cut(s)	574
Bsh1236I	CGCG	2 cut(s)	155, 254
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	195
BsiWI	CGTACG	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
BspACI	CCGC	3 cut(s)	153, 171, 495
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	2 cut(s)	155, 254
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	355, 530
BspQI	GCTCTTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	456, 526
BssMI	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
Bst2UI	CCWGG	2 cut(s)	458, 528
Bst4CI	ACNGT	4 cut(s)	122, 580, 592, 597
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	387, 586
BstDEI	CTNAG	2 cut(s)	366, 424
BstF5I	GGATG	3 cut(s)	28, 265, 304
BstFNI	CGCG	2 cut(s)	155, 254
BstKTI	GATC	6 cut(s)	265, 307, 334, 363, 519, 538
BstMBI	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	2 cut(s)	458, 528
BstSCI	CCNGG	2 cut(s)	456, 526
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	2 cut(s)	155, 254
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	3 cut(s)	331, 360, 516
BstXI	CCANNNNNNTGG	2 cut(s)	39, 122
BstYI	RGATCY	3 cut(s)	331, 360, 516
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	28, 265, 304
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	387, 586
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	2 cut(s)	39, 409
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	2 cut(s)	366, 424
DpnI	GATC	6 cut(s)	264, 306, 333, 362, 518, 537
DpnII	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	456, 526
FaeI	CATG	2 cut(s)	42, 412
FaiI	YATR	3 cut(s)	40, 89, 410
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	2 cut(s)	38, 408
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	153, 172, 604
FokI	GGATG	3 cut(s)	15, 272, 311
Fsp4HI	GCNGC	3 cut(s)	153, 172, 604
FspBI	CTAG	3 cut(s)	335, 522, 555
GluI	GCNGC	3 cut(s)	153, 172, 604
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	2 cut(s)	42, 412
HinfI	GANTC	5 cut(s)	20, 135, 164, 470, 558
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	542
Hpy188III	TCNNGA	3 cut(s)	266, 308, 539
Hpy99I	CGWCG	3 cut(s)	122, 131, 478
HpyCH4III	ACNGT	4 cut(s)	122, 580, 592, 597
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	5 cut(s)	38, 375, 506, 588, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	366, 424
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	42, 412
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	2 cut(s)	313, 502
MaeI	CTAG	3 cut(s)	335, 522, 555
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	350, 401
MalI	GATC	6 cut(s)	264, 306, 333, 362, 518, 537
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
MboII	GAAGA	7 cut(s)	55, 220, 232, 235, 238, 476, 526
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	3 cut(s)	331, 360, 516
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	2 cut(s)	501, 508
MluI	ACGCGT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	170, 173, 176, 238, 304, 454
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	37, 120
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	458, 528
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	458, 528
MvnI	CGCG	2 cut(s)	155, 254
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
NlaIII	CATG	2 cut(s)	42, 412
OliI	CACNNNNGTG	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 152, 482
PfeI	GAWTC	4 cut(s)	20, 135, 164, 470
Pfl23II	CGTACG	1 cut(s)	592
PkrI	GCNGC	3 cut(s)	154, 173, 605
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	456, 526
PspGI	CCWGG	2 cut(s)	456, 526
PspLI	CGTACG	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	3 cut(s)	331, 360, 516
PvuII	CAGCTG	1 cut(s)	606
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	2 cut(s)	37, 120
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	153, 172, 604
Sau3AI	GATC	6 cut(s)	262, 304, 331, 360, 516, 535
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	458, 528
SduI	GDGCHC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	37, 120
SmlI	CTYRAG	2 cut(s)	242, 308
SmoI	CTYRAG	2 cut(s)	242, 308
Sse9I	AATT	2 cut(s)	501, 508
SsiI	CCGC	3 cut(s)	153, 171, 495
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	3 cut(s)	335, 522, 555
StyD4I	CCNGG	2 cut(s)	456, 526
TaaI	ACNGT	4 cut(s)	122, 580, 592, 597
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	18, 92
TasI	AATT	2 cut(s)	501, 508
TauI	GCSGC	2 cut(s)	155, 174
TfiI	GAWTC	4 cut(s)	20, 135, 164, 470
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	1 cut(s)	603
TspGWI	ACGGA	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	3 cut(s)	335, 522, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.