Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001712

Physical Location & Seq

Genomic Coordinates Reverse (-)

2925200 .. 2926744

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTTCTCTATCAATCACATGCAAACAAATCTCCACCCAACAACATGATGGACCCATACACCCCACAGTTCCACTTTGGGCCCCACCCTCTCTCCTATTGTCCTATCCTACATTTCGTGTCCAATCGTCCACCACGTGTCCACTTCTCATTTTTGTCATCATCAACCCCTTTCAACCTCTCGCTACAGCTGTCCCGTCCAGCTTTAAAGGCACGTCTCTCTGCGCCTCTCTCAAACACTCACGAGAAAAGAAAAGTCCTAGAGAGAGAAAGCTCGAGAAAGTTTGAGAGAGAGAGAGAGAGAGAAATGGAGGCCTTCGTTTGCGAAACAGAGTCATGGGTTTCTTCAATCAATGAAATCCCAGATGAGCAAACCAATCAATTGCTTCGAACATCGTCATCTTCTTCCGGATTCACCCAAGAAACCGACGAGGAAGAATGGCCGAAGCCTAACAGGTTGAAGAGCAAGAAGAAGAAGAAGAAGCAGGTTTTGCTTGAAGGGTATGTGGAGGCGGCGGACGACGATGATCTGTCGAGGACCAAGAGCTTGACGGACGAGGATCTCGACGAGCTTAAAGGGTGTTTGGATCTGGGATTCGGGTTCAGCTACGAAGAGATTCCGGAGCTCTGTAACACCTTGCCGGCTCTCGAGCTTTGTTACTCTATGAGCCAGAAGTTCATGGACGAGCACCAGAAGTCGCCGGAGAACTCTCCGGCCGCGGTCGATTCGGTTTCGAGTCAAATTGCCAGTTGGAAGATCTCTAGTCCTGGTGACCATCCCGAGGATGTGAAAGAAAGGCTCAAATACTGGGCACAGGCCGTGGCGTGCACTGTCAAATTATGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

283

Amino Acids

32.21

Weight (kDa)

5.59

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT2G31560 AT2G31560 AT2G31560 AT2G43340
fragaria_vesca	FvH4_4g11250
prunus_persica	Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1
pyrus_communis	pycom04g03180
rosa_chinensis	RchiOBHm_Chr0c40g0503391 RchiOBHm_Chr4g0407341
rosa_laevigata	RLG00000008732
rosa_multiflora	Rmu_co8278391.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351890
rosa_rugosa	Rorug04G0078800 Rorug04G0078800 Rorug04G0078800 Rorug04G0287500 Rorug06G0154700 Rorug07G0147500
rosa_samantha	Rh4AG143600 Rh4BG141300 Rh4CG149900 Rh4DG137500 Rh6BG301800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccII	CGCG	1 cut(s)	719
AccIII	TCCGGA	2 cut(s)	407, 619
AciI	CCGC	4 cut(s)	512, 515, 717, 719
AclWI	GGATC	2 cut(s)	567, 594
AcoI	YGGCCR	2 cut(s)	440, 714
AcvI	CACGTG	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	175, 348, 460, 497
AjiI	CACGTC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	8 cut(s)	190, 203, 273, 546, 571, 606, 625, 652
AluI	AGCT	8 cut(s)	190, 203, 273, 546, 571, 606, 625, 652
Alw21I	GWGCWC	3 cut(s)	627, 690, 830
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	826
AlwI	GGATC	2 cut(s)	567, 594
Ama87I	CYCGRG	3 cut(s)	274, 647, 779
Aor13HI	TCCGGA	2 cut(s)	407, 619
AoxI	GGCC	5 cut(s)	80, 312, 440, 714, 816
ApaI	GGGCCC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	826
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	4 cut(s)	52, 80, 81, 537
AsuHPI	GGTGA	2 cut(s)	406, 782
AsuII	TTCGAA	1 cut(s)	388
AvaI	CYCGRG	3 cut(s)	274, 647, 779
AvaII	GGWCC	2 cut(s)	52, 537
BaeGI	GKGCMC	3 cut(s)	84, 814, 830
BanII	GRGCYC	2 cut(s)	84, 627
BauI	CACGAG	1 cut(s)	242
BbrPI	CACGTG	1 cut(s)	137
Bbv12I	GWGCWC	3 cut(s)	627, 690, 830
BccI	CCATC	2 cut(s)	43, 783
BceAI	ACGGC	1 cut(s)	803
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	260, 762
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	2 cut(s)	513, 717
BlsI	GCNGC	2 cut(s)	514, 718
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	52, 537
BmeT110I	CYCGRG	3 cut(s)	274, 647, 779
BmgBI	CACGTC	1 cut(s)	215
BmgT120I	GGNCC	4 cut(s)	52, 80, 81, 537
BmiI	GGNNCC	3 cut(s)	54, 82, 83
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	1 cut(s)	817
BmuI	ACTGGG	1 cut(s)	817
Bpu14I	TTCGAA	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	717, 780, 819
BsaWI	WCCGGW	2 cut(s)	407, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	747, 812
BseAI	TCCGGA	2 cut(s)	407, 619
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	717, 780, 819
BseGI	GGATG	2 cut(s)	775, 790
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseNI	ACTGG	2 cut(s)	747, 812
BseSI	GKGCMC	3 cut(s)	84, 814, 830
BseX3I	CGGCCG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	719
Bsh1285I	CGRYCG	2 cut(s)	717, 723
BshFI	GGCC	5 cut(s)	82, 314, 442, 716, 818
BsiEI	CGRYCG	2 cut(s)	717, 723
BsiHKAI	GWGCWC	3 cut(s)	627, 690, 830
BsiHKCI	CYCGRG	3 cut(s)	274, 647, 779
BsiSI	CCGG	5 cut(s)	408, 620, 641, 701, 713
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	82, 314, 442, 716, 818
BsoBI	CYCGRG	3 cut(s)	274, 647, 779
Bsp119I	TTCGAA	1 cut(s)	388
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	5 cut(s)	84, 627, 690, 814, 830
Bsp13I	TCCGGA	2 cut(s)	407, 619
Bsp143I	GATC	4 cut(s)	526, 559, 586, 756
BspACI	CCGC	4 cut(s)	512, 515, 717, 719
BspANI	GGCC	5 cut(s)	82, 314, 442, 716, 818
BspEI	TCCGGA	2 cut(s)	407, 619
BspFNI	CGCG	1 cut(s)	719
BspLI	GGNNCC	3 cut(s)	54, 82, 83
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	567, 594
BspQI	GCTCTTC	1 cut(s)	455
BspT104I	TTCGAA	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	747, 812
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	3 cut(s)	717, 780, 819
BssMI	GATC	4 cut(s)	526, 559, 586, 756
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	69, 832
Bst6I	CTCTTC	2 cut(s)	455, 606
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	642, 826
BstDSI	CCRYGG	2 cut(s)	717, 819
BstEII	GGTNACC	1 cut(s)	770
BstF5I	GGATG	2 cut(s)	775, 790
BstFNI	CGCG	1 cut(s)	719
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	529, 562, 589, 759
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	526, 559, 586, 756
BstMCI	CGRYCG	2 cut(s)	717, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 490
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	185
BstSLI	GKGCMC	3 cut(s)	84, 814, 830
BstUI	CGCG	1 cut(s)	719
BstX2I	RGATCY	3 cut(s)	559, 586, 756
BstYI	RGATCY	3 cut(s)	559, 586, 756
BstZI	CGGCCG	1 cut(s)	714
BsuRI	GGCC	5 cut(s)	82, 314, 442, 716, 818
BtgI	CCRYGG	2 cut(s)	717, 819
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	775, 790
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	642, 826
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	4 cut(s)	52, 80, 81, 537
Cfr42I	CCGCGG	1 cut(s)	720
CviAII	CATG	4 cut(s)	20, 46, 336, 679
DpnI	GATC	4 cut(s)	528, 561, 588, 758
DpnII	GATC	4 cut(s)	526, 559, 586, 756
DraI	TTTAAA	1 cut(s)	207
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	440, 714
EagI	CGGCCG	1 cut(s)	714
Eam1104I	CTCTTC	2 cut(s)	455, 606
EarI	CTCTTC	2 cut(s)	455, 606
EciI	GGCGGA	1 cut(s)	530
Ecl136II	GAGCTC	1 cut(s)	625
EclXI	CGGCCG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	2 cut(s)	84, 627
Eco47I	GGWCC	2 cut(s)	52, 537
Eco52I	CGGCCG	1 cut(s)	714
Eco53kI	GAGCTC	1 cut(s)	625
Eco72I	CACGTG	1 cut(s)	137
Eco88I	CYCGRG	3 cut(s)	274, 647, 779
Eco91I	GGTNACC	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	766
EcoT38I	GRGCYC	2 cut(s)	84, 627
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	4 cut(s)	23, 49, 339, 682
FaiI	YATR	8 cut(s)	21, 47, 58, 337, 504, 665, 680, 841
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	4 cut(s)	19, 45, 335, 678
Fnu4HI	GCNGC	2 cut(s)	513, 717
FokI	GGATG	2 cut(s)	762, 797
FriOI	GRGCYC	2 cut(s)	84, 627
Fsp4HI	GCNGC	2 cut(s)	513, 717
FspBI	CTAG	2 cut(s)	260, 762
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	513, 717
HaeIII	GGCC	5 cut(s)	82, 314, 442, 716, 818
HapII	CCGG	5 cut(s)	408, 620, 641, 701, 713
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	23, 49, 339, 682
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	6 cut(s)	332, 411, 594, 616, 725, 736
HpaII	CCGG	5 cut(s)	408, 620, 641, 701, 713
HphI	GGTGA	2 cut(s)	406, 782
Hpy166II	GTNNAC	3 cut(s)	131, 142, 828
Hpy188III	TCNNGA	7 cut(s)	242, 276, 408, 563, 620, 647, 779
Hpy8I	GTNNAC	3 cut(s)	131, 142, 828
Hpy99I	CGWCG	3 cut(s)	431, 524, 569
HpyAV	CCTTC	2 cut(s)	325, 491
HpyCH4III	ACNGT	2 cut(s)	69, 832
HpyCH4IV	ACGT	2 cut(s)	136, 214
HpyCH4V	TGCA	3 cut(s)	23, 828, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 490
HpySE526I	ACGT	2 cut(s)	136, 214
Hsp92II	CATG	4 cut(s)	23, 49, 339, 682
HspAI	GCGC	1 cut(s)	224
Kpn2I	TCCGGA	2 cut(s)	407, 619
KroI	GCCGGC	1 cut(s)	640
KroNI	GCCGGC	1 cut(s)	642
KspI	CCGCGG	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	526, 559, 586, 756
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	260, 762
MaeII	ACGT	2 cut(s)	136, 214
MaeIII	GTNAC	3 cut(s)	629, 656, 770
MalI	GATC	4 cut(s)	528, 561, 588, 758
MboI	GATC	4 cut(s)	526, 559, 586, 756
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	3 cut(s)	559, 586, 756
MhlI	GDGCHC	5 cut(s)	84, 627, 690, 814, 830
MluCI	AATT	3 cut(s)	380, 741, 836
MlyI	GAGTC	2 cut(s)	341, 745
MmeI	TCCRAC	1 cut(s)	731
MnlI	CCTC	9 cut(s)	99, 188, 237, 304, 424, 502, 528, 550, 775
MroI	TCCGGA	2 cut(s)	407, 619
MroNI	GCCGGC	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	2 cut(s)	206, 573
MspA1I	CMGCKG	2 cut(s)	190, 719
MspI	CCGG	5 cut(s)	408, 620, 641, 701, 713
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	2 cut(s)	209, 490
NaeI	GCCGGC	1 cut(s)	642
NdeII	GATC	4 cut(s)	526, 559, 586, 756
NgoMIV	GCCGGC	1 cut(s)	640
NlaIII	CATG	4 cut(s)	23, 49, 339, 682
NlaIV	GGNNCC	3 cut(s)	54, 82, 83
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	388
PaeR7I	CTCGAG	2 cut(s)	274, 647
PceI	AGGCCT	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	2 cut(s)	133, 561
PdiI	GCCGGC	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	411, 594, 616, 725
PkrI	GCNGC	2 cut(s)	514, 718
PleI	GAGTC	2 cut(s)	340, 744
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	2 cut(s)	340, 744
Ppu21I	YACGTR	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	766
PspCI	CACGTG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	3 cut(s)	54, 82, 83
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	52, 80, 81, 537
PsuI	RGATCY	3 cut(s)	559, 586, 756
PvuII	CAGCTG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	627
SacII	CCGCGG	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	206, 573
SatI	GCNGC	2 cut(s)	513, 717
Sau3AI	GATC	4 cut(s)	526, 559, 586, 756
Sau96I	GGNCC	4 cut(s)	52, 80, 81, 537
SchI	GAGTC	2 cut(s)	341, 745
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	5 cut(s)	84, 627, 690, 814, 830
SfcI	CTRYAG	1 cut(s)	185
Sfr274I	CTCGAG	2 cut(s)	274, 647
Sfr303I	CCGCGG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	388
SgrBI	CCGCGG	1 cut(s)	720
SinI	GGWCC	2 cut(s)	52, 537
SlaI	CTCGAG	2 cut(s)	274, 647
SmlI	CTYRAG	2 cut(s)	274, 647
SmoI	CTYRAG	2 cut(s)	274, 647
Sse9I	AATT	3 cut(s)	380, 741, 836
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	4 cut(s)	512, 515, 717, 719
SspMI	CTAG	2 cut(s)	260, 762
SstI	GAGCTC	1 cut(s)	627
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	2 cut(s)	69, 832
TaiI	ACGT	2 cut(s)	139, 217
TaqI	TCGA	7 cut(s)	275, 388, 533, 564, 648, 723, 734
TasI	AATT	3 cut(s)	380, 741, 836
TauI	GCSGC	2 cut(s)	515, 719
TfiI	GAWTC	4 cut(s)	411, 594, 616, 725
Tru1I	TTAA	2 cut(s)	206, 573
Tru9I	TTAA	2 cut(s)	206, 573
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	2 cut(s)	369, 667
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	835
VneI	GTGCAC	1 cut(s)	826
VpaK11BI	GGWCC	2 cut(s)	52, 537
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XhoI	CTCGAG	2 cut(s)	274, 647
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	260, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.