Rh6BG301800

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001712
Physical Location & Seq
Reverse (-)
53095274 .. 53095944
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG301800.1

Sequence Viewer

Length: 519 bp
ATGGCAGAATCTTGGGTTTCTTCATCAATCCAAGAAAACCCAAATGAGGAGGAAACAAATGAGTCATTGGAATCAATCTTTTCTTCTTCTACGTTCAACCGACAAGTGGAGAGGGAAGAAGGAGAATTGCCCAAGCTAAGGAGCTTATCGTCGAGCGGCAGCAGGAAGAAGAAGAAGAAGAATCAGGTTTTGCTTGAAGGGTATGTTGATTCGGCTGATGAGGACGATCTGTCGAGGACCAAGAGCTTAACGGATGAGGATCTCGATGAGCTCAAAGGGTGCTTGGATCTGGGATTTGGGTTCAGCTATGAAGAAATTCCCGAGCTCTGTAACACCTTGCCTGCTCTTGAGCTTTGTTACTCTATGAGCCAGAGGTTCATGGACAAGTCGCCGGAGACCTCTCCTGCTGCACTGGATTCCTGCTCTTCTGTGTCCAGTCTGATTGCCAATTGGAAGATCTCCAGTCCTGAGGTTGTGAAGGCGAGGCTCAAATACTGGGCACAGGCTGTGGCTTGCACA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

173

Amino Acids

19.28

Weight (kDa)

4.54

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 83 - 137 6.2e-25 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 156
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 267, 294
AcsI RAATTY 1 cut(s) 315
AfiI CCNNNNNNNGG 3 cut(s) 46, 106, 138
AgsI TTSAA 2 cut(s) 97, 197
AhdI GACNNNNNGTC 1 cut(s) 229
AluBI AGCT 7 cut(s) 136, 144, 246, 271, 306, 325, 352
AluI AGCT 7 cut(s) 136, 144, 246, 271, 306, 325, 352
Alw21I GWGCWC 2 cut(s) 273, 327
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 267, 294
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 159, 407
ApoI RAATTY 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 237
AxyI CCTNAGG 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 502
BanII GRGCYC 2 cut(s) 273, 327
Bbv12I GWGCWC 2 cut(s) 273, 327
BbvI GCAGC 2 cut(s) 171, 394
BcoDI GTCTC 1 cut(s) 389
BglII AGATCT 1 cut(s) 456
BisI GCNGC 3 cut(s) 157, 160, 408
BlsI GCNGC 3 cut(s) 158, 161, 409
Bme18I GGWCC 1 cut(s) 237
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 505
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 106, 138
Bse1I ACTGG 4 cut(s) 417, 435, 462, 500
Bse21I CCTNAGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 258
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 46, 106, 138
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 4 cut(s) 417, 435, 462, 500
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 502
BseXI GCAGC 2 cut(s) 171, 394
BsgI GTGCAG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 273, 327
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 46, 106, 138
BsmAI GTCTC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 3 cut(s) 273, 327, 502
Bsp143I GATC 4 cut(s) 226, 259, 286, 456
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 460
BspPI GGATC 2 cut(s) 267, 294
BspQI GCTCTTC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 156
BsrI ACTGG 4 cut(s) 417, 435, 462, 500
BssMI GATC 4 cut(s) 226, 259, 286, 456
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 342, 514
BstDEI CTNAG 2 cut(s) 137, 468
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 229, 262, 289, 459
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 226, 259, 286, 456
BstSLI GKGCMC 1 cut(s) 502
BstV1I GCAGC 2 cut(s) 171, 394
BstX2I RGATCY 3 cut(s) 259, 286, 456
BstYI RGATCY 3 cut(s) 259, 286, 456
Bsu36I CCTNAGG 1 cut(s) 468
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 342, 514
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 1 cut(s) 379
DdeI CTNAG 2 cut(s) 137, 468
DpnI GATC 4 cut(s) 228, 261, 288, 458
DpnII GATC 4 cut(s) 226, 259, 286, 456
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 2 cut(s) 271, 325
Eco24I GRGCYC 2 cut(s) 273, 327
Eco31I GGTCTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 2 cut(s) 271, 325
Eco81I CCTNAGG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 2 cut(s) 271, 325
EcoT38I GRGCYC 2 cut(s) 273, 327
FaeI CATG 1 cut(s) 382
FaiI YATR 4 cut(s) 204, 309, 365, 380
FatI CATG 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 157, 160, 408
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 2 cut(s) 273, 327
Fsp4HI GCNGC 3 cut(s) 157, 160, 408
GluI GCNGC 3 cut(s) 157, 160, 408
GsuI CTGGAG 1 cut(s) 445
HapII CCGG 1 cut(s) 392
Hin1II CATG 1 cut(s) 382
HinfI GANTC 6 cut(s) 8, 62, 71, 181, 209, 416
HpaII CCGG 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 4 cut(s) 263, 320, 347, 467
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 113, 191, 472
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 410, 516
HpyF3I CTNAG 2 cut(s) 137, 468
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 4 cut(s) 226, 259, 286, 456
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 2 cut(s) 171, 394
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 329, 356
MalI GATC 4 cut(s) 228, 261, 288, 458
MbiI CCGCTC 1 cut(s) 156
MboI GATC 4 cut(s) 226, 259, 286, 456
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 3 cut(s) 259, 286, 456
MhlI GDGCHC 3 cut(s) 273, 327, 502
MluCI AATT 3 cut(s) 125, 315, 448
MlyI GAGTC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 248
MspI CCGG 1 cut(s) 392
MunI CAATTG 1 cut(s) 448
NdeII GATC 4 cut(s) 226, 259, 286, 456
NlaIII CATG 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 8, 71, 181, 209, 416
PkrI GCNGC 3 cut(s) 158, 161, 409
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 273, 327
PspPI GGNCC 1 cut(s) 237
PsuI RGATCY 3 cut(s) 259, 286, 456
SacI GAGCTC 2 cut(s) 273, 327
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 3 cut(s) 157, 160, 408
Sau3AI GATC 4 cut(s) 226, 259, 286, 456
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 3 cut(s) 273, 327, 502
SinI GGWCC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 125, 315, 448
SsiI CCGC 1 cut(s) 156
SstI GAGCTC 2 cut(s) 273, 327
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 152, 233, 264
TasI AATT 3 cut(s) 125, 315, 448
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 5 cut(s) 8, 71, 181, 209, 416
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 417
TseI GCWGC 2 cut(s) 159, 407
TspDTI ATGAA 3 cut(s) 12, 324, 367
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.