Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001712

Physical Location & Seq

Genomic Coordinates Reverse (-)

17535857 .. 17539150

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G189800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAAACCAAGAAAGTTTCAGAGAGATGGAGGGCTTCACTTGCGGAACAGAATCTTGGGTTTCTTCAATCCGAAAAAACCCAGATGAACAAACCCATCAATCACTACAAACCTCTTCTTCTTCTGAGTTTATGCTAGGAATCGGAGAAGAAGAATGGCCGAAGCTGAACAGCTTGAAGAGCAAGAAGAAGAAGAAAAAGAACCAGGTTTTGCTTGAAGGGTATGTAGAGTCAGCCGATGAGGATGATTTGTCGAGGACCAAGAGTTTGACGGATGAGGATCTTGACGAGCTCAAAGGGTGTTTGGATCTGGGATTTGGGTTCAGCTACGAAGAGATTCCTGAGCTCTGTAACACCTTGCCTGCTCTTGAGCTTTGTTATTCTATGAGCCAGAAATTCATGGACGAAAACCAGAAGTCGCCGGAGAATTCTCCGACCACAGTTGATTCGTGCCCTTCGGTTTCAAGTCCAATTGCCAATTGGAAGATCTCTAGTCCTGGTGACCATCCTGAGGATGTGAAGGCAAGGCTCAAATACTGGGCACAGGCTGTGGCATGCACCGTTAGGTTGGACCTTCATCGGAAGCTTGCGCTTCACTGGTTTATTCTGAAATGGCTCCTGTCAGGAATGATTGCTCCTGCAATTCTAGAACCTGTTGATGATGGATTTACTCTGAGGAAGAGAAAGAGGATGATGAAGAAGAATATTTCAGGTTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

241

Amino Acids

27.3

Weight (kDa)

5.71

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT2G31560 AT2G31560 AT2G31560 AT2G43340
fragaria_vesca	FvH4_4g11250
prunus_persica	Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1
pyrus_communis	pycom04g03180
rosa_chinensis	RchiOBHm_Chr0c40g0503391 RchiOBHm_Chr4g0407341
rosa_laevigata	RLG00000008732
rosa_multiflora	Rmu_co8278391.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351890
rosa_rugosa	Rorug04G0078800 Rorug04G0078800 Rorug04G0078800 Rorug04G0287500 Rorug06G0154700 Rorug07G0147500
rosa_samantha	Rh4AG143600 Rh4BG141300 Rh4CG149900 Rh4DG137500 Rh6BG301800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	2 cut(s)	288, 315
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	395, 427
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	69, 178, 218, 465
AjnI	CCWGG	2 cut(s)	204, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	7 cut(s)	166, 174, 292, 327, 346, 373, 586
AluI	AGCT	7 cut(s)	166, 174, 292, 327, 346, 373, 586
Alw21I	GWGCWC	2 cut(s)	294, 348
AlwI	GGATC	2 cut(s)	288, 315
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	395, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	258, 571
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	258, 571
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	455, 544
BanII	GRGCYC	2 cut(s)	294, 348
Bbv12I	GWGCWC	2 cut(s)	294, 348
BccI	CCATC	4 cut(s)	22, 105, 513, 656
BciT130I	CCWGG	2 cut(s)	206, 498
BfaI	CTAG	3 cut(s)	137, 492, 647
BglII	AGATCT	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	206, 498
Bme18I	GGWCC	2 cut(s)	258, 571
BmgT120I	GGNCC	2 cut(s)	258, 571
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	2 cut(s)	206, 498
BmrI	ACTGGG	1 cut(s)	547
BmuI	ACTGGG	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	2 cut(s)	542, 602
Bse21I	CCTNAGG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	206, 498
BseGI	GGATG	5 cut(s)	250, 280, 505, 520, 696
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	4 cut(s)	117, 333, 501, 665
BseNI	ACTGG	2 cut(s)	542, 602
BseSI	GKGCMC	2 cut(s)	455, 544
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	294, 348
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	511
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	4 cut(s)	294, 348, 455, 544
Bsp143I	GATC	3 cut(s)	280, 307, 486
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	4 cut(s)	118, 334, 502, 666
BspLI	GGNNCC	1 cut(s)	617
BspPI	GGATC	2 cut(s)	288, 315
BspQI	GCTCTTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	542, 602
BssMI	GATC	3 cut(s)	280, 307, 486
Bst2UI	CCWGG	2 cut(s)	206, 498
Bst4CI	ACNGT	2 cut(s)	442, 562
Bst6I	CTCTTC	4 cut(s)	121, 173, 327, 674
BstC8I	GCNNGC	3 cut(s)	363, 556, 588
BstDEI	CTNAG	4 cut(s)	126, 342, 510, 674
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	5 cut(s)	250, 280, 505, 520, 696
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	3 cut(s)	283, 310, 489
BstMBI	GATC	3 cut(s)	280, 307, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 180
BstNI	CCWGG	2 cut(s)	206, 498
BstNSI	RCATGY	1 cut(s)	558
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	204, 496
BstSLI	GKGCMC	2 cut(s)	455, 544
BstX2I	RGATCY	3 cut(s)	280, 307, 486
BstYI	RGATCY	3 cut(s)	280, 307, 486
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	5 cut(s)	250, 280, 505, 520, 696
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	3 cut(s)	363, 556, 588
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	258, 571
CsiI	ACCWGGT	1 cut(s)	204
CviAII	CATG	2 cut(s)	400, 555
DdeI	CTNAG	4 cut(s)	126, 342, 510, 674
DpnI	GATC	3 cut(s)	282, 309, 488
DpnII	GATC	3 cut(s)	280, 307, 486
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	4 cut(s)	121, 173, 327, 674
EarI	CTCTTC	4 cut(s)	121, 173, 327, 674
Ecl136II	GAGCTC	2 cut(s)	292, 346
Eco24I	GRGCYC	2 cut(s)	294, 348
Eco47I	GGWCC	2 cut(s)	258, 571
Eco53kI	GAGCTC	2 cut(s)	292, 346
Eco81I	CCTNAGG	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	500
EcoICRI	GAGCTC	2 cut(s)	292, 346
EcoO65I	GGTNACC	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	204, 496
EcoT38I	GRGCYC	2 cut(s)	294, 348
FaeI	CATG	2 cut(s)	403, 558
FaiI	YATR	5 cut(s)	134, 225, 386, 401, 556
FatI	CATG	2 cut(s)	399, 554
FokI	GGATG	5 cut(s)	257, 287, 492, 527, 703
FriOI	GRGCYC	2 cut(s)	294, 348
FspBI	CTAG	3 cut(s)	137, 492, 647
GlaI	GCGC	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	2 cut(s)	403, 558
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	5 cut(s)	53, 141, 230, 337, 446
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	8 cut(s)	23, 74, 127, 146, 435, 582, 609, 675
Hpy188III	TCNNGA	6 cut(s)	284, 341, 368, 509, 624, 647
HpyAV	CCTTC	4 cut(s)	212, 465, 514, 584
HpyCH4III	ACNGT	2 cut(s)	442, 562
HpyCH4V	TGCA	2 cut(s)	558, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 180
HpyF3I	CTNAG	4 cut(s)	126, 342, 510, 674
Hsp92II	CATG	2 cut(s)	403, 558
HspAI	GCGC	1 cut(s)	590
Kzo9I	GATC	3 cut(s)	280, 307, 486
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	621, 640
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	3 cut(s)	137, 492, 647
MaeIII	GTNAC	2 cut(s)	350, 500
MalI	GATC	3 cut(s)	282, 309, 488
MboI	GATC	3 cut(s)	280, 307, 486
MfeI	CAATTG	2 cut(s)	471, 478
MflI	RGATCY	3 cut(s)	280, 307, 486
MhlI	GDGCHC	4 cut(s)	294, 348, 455, 544
MluCI	AATT	5 cut(s)	395, 427, 471, 478, 642
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	458, 549
MnlI	CCTC	8 cut(s)	25, 124, 235, 249, 271, 505, 669, 681
MroXI	GAANNNNTTC	1 cut(s)	336
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	206, 498
MunI	CAATTG	2 cut(s)	471, 478
MvaI	CCWGG	2 cut(s)	206, 498
MwoI	GCNNNNNNNGC	2 cut(s)	42, 180
NdeII	GATC	3 cut(s)	280, 307, 486
NlaIII	CATG	2 cut(s)	403, 558
NlaIV	GGNNCC	1 cut(s)	617
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	53, 141, 337, 446
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp124BI	GAGCTC	2 cut(s)	294, 348
Psp6I	CCWGG	2 cut(s)	204, 496
PspEI	GGTNACC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	204, 496
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	2 cut(s)	258, 571
PsuI	RGATCY	3 cut(s)	280, 307, 486
SacI	GAGCTC	2 cut(s)	294, 348
SapI	GCTCTTC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	280, 307, 486
Sau96I	GGNCC	2 cut(s)	258, 571
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	206, 498
SduI	GDGCHC	4 cut(s)	294, 348, 455, 544
SexAI	ACCWGGT	1 cut(s)	204
SinI	GGWCC	2 cut(s)	258, 571
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	558
Sse9I	AATT	5 cut(s)	395, 427, 471, 478, 642
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	3 cut(s)	137, 492, 647
SstI	GAGCTC	2 cut(s)	294, 348
StyD4I	CCNGG	2 cut(s)	204, 496
TaaI	ACNGT	2 cut(s)	442, 562
TaqI	TCGA	1 cut(s)	254
TasI	AATT	5 cut(s)	395, 427, 471, 478, 642
TfiI	GAWTC	4 cut(s)	53, 141, 337, 446
TscAI	CASTG	1 cut(s)	602
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	17, 102, 388, 566, 710
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	258, 571
XapI	RAATTY	2 cut(s)	395, 427
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	1 cut(s)	558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	3 cut(s)	137, 492, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.