Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8278391.1

Orthogroup ID

OG0001712

Physical Location & Seq

Genomic Coordinates Forward (+)

17 .. 741

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8278391.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggcagcctacatcgattcttgggtttcttcttcaatccaagaaaacccaaatgaagaggaagcaaatgagtcatcattggaatcaatcttttcttcttctgcgttcaaccgacgagtggagcgggaggaaggagaattgcccaagctaaggagctcgtcgtcgagcggcagcaggaagaagaagaagaagaaccaggttttgcttgaagggtacgttgattcggccgatgaggacgatctgtcgaggaccaagagcttgacggatgaggatctcgatgagctcaaagggtgcttggatctgggattcgggttcagctatgaagaaattcccgagctctgtaacaccttgcctgctcttgagctttgttactctatgagccagaagtttatggataagtcgccggacagctctcctgctgcactggattcctgctcttctgtgtccagtccgattgccaattggaagatctccagtcctggtgaccatccagaggatgtgaaggcgaggctgaaatactgggcacaggctgtggcgtgcactgttagattgtgcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

186

Amino Acids

20.58

Weight (kDa)

4.6

Isoelectric Point (pI)

66.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT2G31560 AT2G31560 AT2G31560 AT2G43340
fragaria_vesca	FvH4_4g11250
prunus_persica	Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1
pyrus_communis	pycom04g03180
rosa_chinensis	RchiOBHm_Chr0c40g0503391 RchiOBHm_Chr4g0407341
rosa_laevigata	RLG00000008732
rosa_multiflora	Rmu_co8278391.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351890
rosa_rugosa	Rorug04G0078800 Rorug04G0078800 Rorug04G0078800 Rorug04G0287500 Rorug06G0154700 Rorug07G0147500
rosa_samantha	Rh4AG143600 Rh4BG141300 Rh4CG149900 Rh4DG137500 Rh6BG301800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	124, 168
AciI	CCGC	2 cut(s)	124, 168
AclWI	GGATC	2 cut(s)	279, 306
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	118, 150, 493
AgsI	TTSAA	3 cut(s)	36, 109, 209
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	195, 478
AluBI	AGCT	8 cut(s)	148, 156, 258, 283, 318, 337, 364, 411
AluI	AGCT	8 cut(s)	148, 156, 258, 283, 318, 337, 364, 411
Alw21I	GWGCWC	4 cut(s)	158, 285, 339, 542
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	279, 306
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	225
ApaLI	GTGCAC	1 cut(s)	538
ApeKI	GCWGC	3 cut(s)	5, 171, 419
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	2 cut(s)	526, 542
BanII	GRGCYC	3 cut(s)	158, 285, 339
Bbv12I	GWGCWC	4 cut(s)	158, 285, 339, 542
BbvI	GCAGC	3 cut(s)	17, 183, 406
BccI	CCATC	1 cut(s)	495
BciT130I	CCWGG	2 cut(s)	197, 480
BfaI	CTAG	1 cut(s)	559
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	4 cut(s)	6, 169, 172, 420
BlsI	GCNGC	4 cut(s)	7, 170, 173, 421
Bme1390I	CCNGG	2 cut(s)	197, 480
Bme18I	GGWCC	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	197, 480
BmrI	ACTGGG	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 150, 493
Bse1I	ACTGG	4 cut(s)	429, 447, 474, 524
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	197, 480
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	3 cut(s)	271, 487, 502
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	118, 150, 493
BseNI	ACTGG	4 cut(s)	429, 447, 474, 524
BseSI	GKGCMC	2 cut(s)	526, 542
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	17, 183, 406
BsgI	GTGCAG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	4 cut(s)	158, 285, 339, 542
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	118, 150, 493
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	5 cut(s)	158, 285, 339, 526, 542
Bsp143I	GATC	4 cut(s)	238, 271, 298, 468
BspACI	CCGC	2 cut(s)	124, 168
BspANI	GGCC	1 cut(s)	227
BspDI	ATCGAT	1 cut(s)	15
BspPI	GGATC	2 cut(s)	279, 306
BspQI	GCTCTTC	1 cut(s)	442
BsrBI	CCGCTC	2 cut(s)	124, 168
BsrI	ACTGG	4 cut(s)	429, 447, 474, 524
BssMI	GATC	4 cut(s)	238, 271, 298, 468
Bst2UI	CCWGG	2 cut(s)	197, 480
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	2 cut(s)	51, 442
BstC8I	GCNNGC	2 cut(s)	354, 538
BstDEI	CTNAG	1 cut(s)	149
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	271, 487, 502
BstKTI	GATC	4 cut(s)	241, 274, 301, 471
BstMBI	GATC	4 cut(s)	238, 271, 298, 468
BstMCI	CGRYCG	1 cut(s)	228
BstNI	CCWGG	2 cut(s)	197, 480
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	195, 478
BstSLI	GKGCMC	2 cut(s)	526, 542
BstV1I	GCAGC	3 cut(s)	17, 183, 406
BstX2I	RGATCY	3 cut(s)	271, 298, 468
BstYI	RGATCY	3 cut(s)	271, 298, 468
BstZI	CGGCCG	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	227
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	271, 487, 502
BtsIMutI	CAGTG	2 cut(s)	422, 540
Cac8I	GCNNGC	2 cut(s)	354, 538
Cfr13I	GGNCC	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	214
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	4 cut(s)	240, 273, 300, 470
DpnII	GATC	4 cut(s)	238, 271, 298, 468
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	225
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	51, 442
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	2 cut(s)	51, 442
Ecl136II	GAGCTC	3 cut(s)	156, 283, 337
EclXI	CGGCCG	1 cut(s)	225
Eco24I	GRGCYC	3 cut(s)	158, 285, 339
Eco47I	GGWCC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	225
Eco53kI	GAGCTC	3 cut(s)	156, 283, 337
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	482
EcoICRI	GAGCTC	3 cut(s)	156, 283, 337
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	195, 478
EcoT38I	GRGCYC	3 cut(s)	158, 285, 339
FaiI	YATR	3 cut(s)	321, 377, 392
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	6, 169, 172, 420
FokI	GGATG	3 cut(s)	278, 474, 509
FriOI	GRGCYC	3 cut(s)	158, 285, 339
Fsp4HI	GCNGC	4 cut(s)	6, 169, 172, 420
FspBI	CTAG	1 cut(s)	559
GluI	GCNGC	4 cut(s)	6, 169, 172, 420
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	404
HinfI	GANTC	6 cut(s)	17, 71, 83, 221, 306, 428
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	4 cut(s)	275, 332, 359, 491
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	3 cut(s)	117, 163, 166
HpyAV	CCTTC	3 cut(s)	125, 203, 496
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	422, 540, 555
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	238, 271, 298, 468
LguI	GCTCTTC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	121, 153
Lsp1109I	GCAGC	3 cut(s)	17, 183, 406
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	1 cut(s)	559
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	341, 368, 482
MalI	GATC	4 cut(s)	240, 273, 300, 470
MbiI	CCGCTC	2 cut(s)	124, 168
MboI	GATC	4 cut(s)	238, 271, 298, 468
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	3 cut(s)	271, 298, 468
MhlI	GDGCHC	5 cut(s)	158, 285, 339, 526, 542
MluCI	AATT	3 cut(s)	137, 327, 460
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	52, 121, 226, 240, 262, 487, 501
MroXI	GAANNNNTTC	1 cut(s)	327
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	197, 480
MunI	CAATTG	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	197, 480
NdeII	GATC	4 cut(s)	238, 271, 298, 468
NmuCI	GTSAC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	5 cut(s)	17, 83, 221, 306, 428
PkrI	GCNGC	4 cut(s)	7, 170, 173, 421
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp124BI	GAGCTC	3 cut(s)	158, 285, 339
Psp6I	CCWGG	2 cut(s)	195, 478
PspEI	GGTNACC	1 cut(s)	482
PspGI	CCWGG	2 cut(s)	195, 478
PspPI	GGNCC	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	271, 298, 468
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	3 cut(s)	158, 285, 339
SapI	GCTCTTC	1 cut(s)	442
SatI	GCNGC	4 cut(s)	6, 169, 172, 420
Sau3AI	GATC	4 cut(s)	238, 271, 298, 468
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	197, 480
SduI	GDGCHC	5 cut(s)	158, 285, 339, 526, 542
SexAI	ACCWGGT	1 cut(s)	195
SinI	GGWCC	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	137, 327, 460
SsiI	CCGC	2 cut(s)	124, 168
SspMI	CTAG	1 cut(s)	559
SstI	GAGCTC	3 cut(s)	158, 285, 339
StyD4I	CCNGG	2 cut(s)	195, 478
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	4 cut(s)	15, 164, 245, 276
TasI	AATT	3 cut(s)	137, 327, 460
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	5 cut(s)	17, 83, 221, 306, 428
TscAI	CASTG	2 cut(s)	429, 547
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	3 cut(s)	5, 171, 419
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	69, 336
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	429, 547
VneI	GTGCAC	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.