RLG00000008732

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001712
Physical Location & Seq
Reverse (-)
35873126 .. 35874512
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008732

Sequence Viewer

Length: 723 bp
ATGGCAGCCTACACCGAATCTTGGGTTTCTTCTTCAATCCAAGAAAACCCAAATCAAGAGGAAGCAAATGAGTCATTGGAATCAATCTTTTCTTCTTCTGCGTTCAACCGACAAGTGGAGCGGGAAGAAGGAGAATTGCCCAAGCTAAGGAGCTCCTCATCGTCGAGCGGCAGCAGGAAGAAGAAGAAGAAGAACCAGGTTTTGCTTGAAGGGTATGTTGATTCGGCCGATGAGGACGATCTGTCGAGGACCAAGAGCTTGACGGATGAGGATCTCGATGAGCTCAAAGGGTGCCTGGATCTGGGATTTGGGTTCAGCTATGAAGAAATTCCCGAGCTCTGTAACACCTTGCCTGCTCTTGAGCTCTGTTACTCTATGAGCCAGAAGTTCATGGACAAGTCGCCGGAGAGCTCTCCTGCTGCACTGGATTCCTGCTCTTCTGTGTCCAGTCCGATTGCCAGTTGGAAGATCTCCAGTCCTGGTGACCATCCAGAGGATGTGAAGGCGAGGCTGAAATACTGGGCACAGGCTGTGGCGTGCACAGTGTGGGTGGGTGGACCTTCCTATGCAGCTTGTGCTGTATGGTTTATTCCAGAATGGCTTCATGGAGAAGATTATTTCAGTGGTGAGGTGAGAGCCTCCTTTGGAGCTTCACCAAATACTTGCTGTCCTCTGCATTTGCCGAGAAAGGTTGGATGGACCGACCATGCTGACAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

241

Amino Acids

26.43

Weight (kDa)

4.64

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 87 - 140 8.7e-25 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 291
AccBSI CCGCTC 2 cut(s) 121, 168
AciI CCGC 2 cut(s) 121, 168
AclWI GGATC 2 cut(s) 279, 306
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 327
AdeI CACNNNGTG 1 cut(s) 546
AfiI CCNNNNNNNGG 5 cut(s) 21, 115, 147, 301, 493
AgsI TTSAA 3 cut(s) 36, 106, 209
AhdI GACNNNNNGTC 1 cut(s) 241
AjnI CCWGG 3 cut(s) 195, 294, 478
Alw21I GWGCWC 6 cut(s) 155, 285, 339, 366, 413, 542
Alw44I GTGCAC 1 cut(s) 538
AlwI GGATC 2 cut(s) 279, 306
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 1 cut(s) 225
ApaLI GTGCAC 1 cut(s) 538
ApeKI GCWGC 4 cut(s) 5, 171, 419, 569
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 2 cut(s) 327, 600
AspS9I GGNCC 3 cut(s) 249, 557, 699
AsuHPI GGTGA 4 cut(s) 494, 638, 643, 645
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 3 cut(s) 249, 557, 699
BaeGI GKGCMC 2 cut(s) 526, 542
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 5 cut(s) 155, 285, 339, 366, 413
Bbv12I GWGCWC 6 cut(s) 155, 285, 339, 366, 413, 542
BbvI GCAGC 4 cut(s) 17, 183, 406, 581
BccI CCATC 2 cut(s) 495, 690
BciT130I CCWGG 3 cut(s) 197, 296, 480
BglII AGATCT 1 cut(s) 468
BisI GCNGC 5 cut(s) 6, 169, 172, 420, 570
BlsI GCNGC 5 cut(s) 7, 170, 173, 421, 571
Bme1390I CCNGG 3 cut(s) 197, 296, 480
Bme18I GGWCC 3 cut(s) 249, 557, 699
BmeRI GACNNNNNGTC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 249, 557, 699
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 3 cut(s) 197, 296, 480
BmrI ACTGGG 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 115, 147, 301, 493
Bse1I ACTGG 5 cut(s) 429, 447, 459, 474, 524
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 3 cut(s) 197, 296, 480
BseGI GGATG 4 cut(s) 271, 487, 502, 701
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 5 cut(s) 21, 115, 147, 301, 493
BseNI ACTGG 5 cut(s) 429, 447, 459, 474, 524
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 2 cut(s) 526, 542
BseX3I CGGCCG 1 cut(s) 225
BseXI GCAGC 4 cut(s) 17, 183, 406, 581
BsgI GTGCAG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 6 cut(s) 155, 285, 339, 366, 413, 542
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 404
BslI CCNNNNNNNGG 5 cut(s) 21, 115, 147, 301, 493
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 7 cut(s) 155, 285, 339, 366, 413, 526, 542
Bsp143I GATC 4 cut(s) 238, 271, 298, 468
BspACI CCGC 2 cut(s) 121, 168
BspANI GGCC 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 293
BspPI GGATC 2 cut(s) 279, 306
BspQI GCTCTTC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 291
BsrBI CCGCTC 2 cut(s) 121, 168
BsrI ACTGG 5 cut(s) 429, 447, 459, 474, 524
BssMI GATC 4 cut(s) 238, 271, 298, 468
Bst2UI CCWGG 3 cut(s) 197, 296, 480
Bst4CI ACNGT 2 cut(s) 544, 716
Bst6I CTCTTC 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 354, 538
BstDEI CTNAG 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 4 cut(s) 271, 487, 502, 701
BstKTI GATC 4 cut(s) 241, 274, 301, 471
BstMBI GATC 4 cut(s) 238, 271, 298, 468
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 3 cut(s) 197, 296, 480
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 195, 294, 478
BstSLI GKGCMC 2 cut(s) 526, 542
BstV1I GCAGC 4 cut(s) 17, 183, 406, 581
BstX2I RGATCY 3 cut(s) 271, 298, 468
BstYI RGATCY 3 cut(s) 271, 298, 468
BstZI CGGCCG 1 cut(s) 225
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 4 cut(s) 271, 487, 502, 701
BtsIMutI CAGTG 3 cut(s) 422, 549, 628
Cac8I GCNNGC 2 cut(s) 354, 538
Cfr13I GGNCC 3 cut(s) 249, 557, 699
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 3 cut(s) 391, 605, 707
DdeI CTNAG 1 cut(s) 146
DpnI GATC 4 cut(s) 240, 273, 300, 470
DpnII GATC 4 cut(s) 238, 271, 298, 468
DraIII CACNNNGTG 1 cut(s) 546
DriI GACNNNNNGTC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 225
EagI CGGCCG 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 442
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 442
Ecl136II GAGCTC 5 cut(s) 153, 283, 337, 364, 411
EclXI CGGCCG 1 cut(s) 225
Eco24I GRGCYC 5 cut(s) 155, 285, 339, 366, 413
Eco47I GGWCC 3 cut(s) 249, 557, 699
Eco52I CGGCCG 1 cut(s) 225
Eco53kI GAGCTC 5 cut(s) 153, 283, 337, 364, 411
Eco88I CYCGRG 1 cut(s) 332
Eco91I GGTNACC 1 cut(s) 482
EcoICRI GAGCTC 5 cut(s) 153, 283, 337, 364, 411
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 3 cut(s) 195, 294, 478
EcoT38I GRGCYC 5 cut(s) 155, 285, 339, 366, 413
FaeI CATG 3 cut(s) 394, 608, 710
FaiI YATR 8 cut(s) 216, 321, 377, 392, 567, 583, 606, 708
FatI CATG 3 cut(s) 390, 604, 706
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 6, 169, 172, 420, 570
FokI GGATG 4 cut(s) 278, 474, 509, 708
FriOI GRGCYC 5 cut(s) 155, 285, 339, 366, 413
Fsp4HI GCNGC 5 cut(s) 6, 169, 172, 420, 570
GluI GCNGC 5 cut(s) 6, 169, 172, 420, 570
GsuI CTGGAG 1 cut(s) 457
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 404
Hin1II CATG 3 cut(s) 394, 608, 710
HinfI GANTC 5 cut(s) 17, 71, 80, 221, 428
HpaII CCGG 1 cut(s) 404
HphI GGTGA 4 cut(s) 494, 638, 643, 645
Hpy166II GTNNAC 2 cut(s) 540, 557
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 6 cut(s) 56, 275, 332, 359, 491, 593
Hpy8I GTNNAC 2 cut(s) 540, 557
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 4 cut(s) 122, 203, 496, 570
HpyCH4III ACNGT 2 cut(s) 544, 716
HpyCH4V TGCA 4 cut(s) 422, 540, 569, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 3 cut(s) 394, 608, 710
Kzo9I GATC 4 cut(s) 238, 271, 298, 468
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 4 cut(s) 118, 150, 158, 647
Lsp1109I GCAGC 4 cut(s) 17, 183, 406, 581
MabI ACCWGGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 341, 368, 482
MalI GATC 4 cut(s) 240, 273, 300, 470
MbiI CCGCTC 2 cut(s) 121, 168
MboI GATC 4 cut(s) 238, 271, 298, 468
MflI RGATCY 3 cut(s) 271, 298, 468
MhlI GDGCHC 7 cut(s) 155, 285, 339, 366, 413, 526, 542
MluCI AATT 2 cut(s) 134, 327
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 443, 673
MroXI GAANNNNTTC 2 cut(s) 327, 600
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 3 cut(s) 197, 296, 480
MvaI CCWGG 3 cut(s) 197, 296, 480
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeII GATC 4 cut(s) 238, 271, 298, 468
NlaIII CATG 3 cut(s) 394, 608, 710
NlaIV GGNNCC 1 cut(s) 293
NmeAIII GCCGAG 1 cut(s) 708
NmuCI GTSAC 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 442
PdmI GAANNNNTTC 2 cut(s) 327, 600
PfeI GAWTC 4 cut(s) 17, 80, 221, 428
PkrI GCNGC 5 cut(s) 7, 170, 173, 421, 571
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp124BI GAGCTC 5 cut(s) 155, 285, 339, 366, 413
Psp6I CCWGG 3 cut(s) 195, 294, 478
PspEI GGTNACC 1 cut(s) 482
PspGI CCWGG 3 cut(s) 195, 294, 478
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 3 cut(s) 249, 557, 699
PsuI RGATCY 3 cut(s) 271, 298, 468
SacI GAGCTC 5 cut(s) 155, 285, 339, 366, 413
SapI GCTCTTC 1 cut(s) 442
SatI GCNGC 5 cut(s) 6, 169, 172, 420, 570
Sau3AI GATC 4 cut(s) 238, 271, 298, 468
Sau96I GGNCC 3 cut(s) 249, 557, 699
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 3 cut(s) 197, 296, 480
SduI GDGCHC 7 cut(s) 155, 285, 339, 366, 413, 526, 542
SexAI ACCWGGT 1 cut(s) 195
SinI GGWCC 3 cut(s) 249, 557, 699
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 134, 327
SsiI CCGC 2 cut(s) 121, 168
SstI GAGCTC 5 cut(s) 155, 285, 339, 366, 413
StyD4I CCNGG 3 cut(s) 195, 294, 478
TaaI ACNGT 2 cut(s) 544, 716
TaqI TCGA 3 cut(s) 164, 245, 276
TaqII GACCGA 1 cut(s) 716
TasI AATT 2 cut(s) 134, 327
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 4 cut(s) 17, 80, 221, 428
TscAI CASTG 3 cut(s) 429, 549, 628
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 4 cut(s) 5, 171, 419, 569
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 336, 379, 593
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 3 cut(s) 429, 549, 628
VneI GTGCAC 1 cut(s) 538
VpaK11BI GGWCC 3 cut(s) 249, 557, 699
XapI RAATTY 1 cut(s) 327
XmnI GAANNNNTTC 2 cut(s) 327, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.