Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0001712

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAGCCTATATCGATTCTTGGGTTTCTTCTTCAATCCAAGAAAACCCAAAAGAAGAGGAAGCAAATGAGTCATTGGAATCAATCTTTTCTTCTTCTGCGTTCAACCGACAAGTGGAGCGGGAGGAAGGAGAATTGCCCAAGCTAAGGAGCTCATCGTCGAGCGGCAGCAGGAAGAAGAAGAAGAAGAACCAGGTTTTGCTTGAAGGGTATGTTGATTCGGCCGATGAGGACGATCTGTCGAGGACCAAGAGCTTGACGGATGAGGATCTCGATGAGCTCAAAGGGTGCTTGGATCTGGGATTCGGGTTCAGCTATGAAGAAATTCCCGAGCTCTGTAACACCTTGCCTGCTCTTGAGCTTTGTTACTCTATGAGCCAGAAGTTTATGGATAAGTCGCCGGAGAGCTCTCCTGCTGCACTGGATTCCTGCTCTTCTGTGTCCAGTCCGATTGCCAATTGGAAGATCTCCAGTCCTGGTGACCATCCAGAGGATGTGAAGGCGAGGCTGAAATACTGGGCACAGGCTGTGGCGTGCACTGTTAGATTGTGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

185

Amino Acids

20.49

Weight (kDa)

4.61

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT1G05870 AT2G31560 AT2G31560 AT2G31560 AT2G43340
fragaria_vesca	FvH4_4g11250
prunus_persica	Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1 Prupe.1G189800_v2.0.a1
pyrus_communis	pycom04g03180
rosa_chinensis	RchiOBHm_Chr0c40g0503391 RchiOBHm_Chr4g0407341
rosa_laevigata	RLG00000008732
rosa_multiflora	Rmu_co8278391.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351890
rosa_rugosa	Rorug04G0078800 Rorug04G0078800 Rorug04G0078800 Rorug04G0287500 Rorug06G0154700 Rorug07G0147500
rosa_samantha	Rh4AG143600 Rh4BG141300 Rh4CG149900 Rh4DG137500 Rh6BG301800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	121, 165
AciI	CCGC	2 cut(s)	121, 165
AclWI	GGATC	2 cut(s)	276, 303
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	115, 147, 490
AgsI	TTSAA	3 cut(s)	36, 106, 206
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	192, 475
AluBI	AGCT	8 cut(s)	145, 153, 255, 280, 315, 334, 361, 408
AluI	AGCT	8 cut(s)	145, 153, 255, 280, 315, 334, 361, 408
Alw21I	GWGCWC	5 cut(s)	155, 282, 336, 410, 539
Alw44I	GTGCAC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	276, 303
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	222
ApaLI	GTGCAC	1 cut(s)	535
ApeKI	GCWGC	3 cut(s)	5, 168, 416
ApoI	RAATTY	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	246
BaeGI	GKGCMC	2 cut(s)	523, 539
BanII	GRGCYC	4 cut(s)	155, 282, 336, 410
Bbv12I	GWGCWC	5 cut(s)	155, 282, 336, 410, 539
BbvI	GCAGC	3 cut(s)	17, 180, 403
BccI	CCATC	1 cut(s)	492
BciT130I	CCWGG	2 cut(s)	194, 477
BfaI	CTAG	1 cut(s)	556
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	4 cut(s)	6, 166, 169, 417
BlsI	GCNGC	4 cut(s)	7, 167, 170, 418
Bme1390I	CCNGG	2 cut(s)	194, 477
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	194, 477
BmrI	ACTGGG	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 147, 490
Bse1I	ACTGG	4 cut(s)	426, 444, 471, 521
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	194, 477
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	3 cut(s)	268, 484, 499
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	115, 147, 490
BseNI	ACTGG	4 cut(s)	426, 444, 471, 521
BseSI	GKGCMC	2 cut(s)	523, 539
BseX3I	CGGCCG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	17, 180, 403
BsgI	GTGCAG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	5 cut(s)	155, 282, 336, 410, 539
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	115, 147, 490
BsnI	GGCC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	6 cut(s)	155, 282, 336, 410, 523, 539
Bsp143I	GATC	4 cut(s)	235, 268, 295, 465
BspACI	CCGC	2 cut(s)	121, 165
BspANI	GGCC	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	15
BspPI	GGATC	2 cut(s)	276, 303
BspQI	GCTCTTC	1 cut(s)	439
BsrBI	CCGCTC	2 cut(s)	121, 165
BsrI	ACTGG	4 cut(s)	426, 444, 471, 521
BssMI	GATC	4 cut(s)	235, 268, 295, 465
Bst2UI	CCWGG	2 cut(s)	194, 477
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	2 cut(s)	51, 439
BstC8I	GCNNGC	2 cut(s)	351, 535
BstDEI	CTNAG	1 cut(s)	146
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	268, 484, 499
BstKTI	GATC	4 cut(s)	238, 271, 298, 468
BstMBI	GATC	4 cut(s)	235, 268, 295, 465
BstMCI	CGRYCG	1 cut(s)	225
BstNI	CCWGG	2 cut(s)	194, 477
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	192, 475
BstSLI	GKGCMC	2 cut(s)	523, 539
BstV1I	GCAGC	3 cut(s)	17, 180, 403
BstX2I	RGATCY	3 cut(s)	268, 295, 465
BstYI	RGATCY	3 cut(s)	268, 295, 465
BstZI	CGGCCG	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	268, 484, 499
BtsIMutI	CAGTG	2 cut(s)	419, 537
Cac8I	GCNNGC	2 cut(s)	351, 535
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	4 cut(s)	237, 270, 297, 467
DpnII	GATC	4 cut(s)	235, 268, 295, 465
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	222
EagI	CGGCCG	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	51, 439
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	2 cut(s)	51, 439
Ecl136II	GAGCTC	4 cut(s)	153, 280, 334, 408
EclXI	CGGCCG	1 cut(s)	222
Eco24I	GRGCYC	4 cut(s)	155, 282, 336, 410
Eco47I	GGWCC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	222
Eco53kI	GAGCTC	4 cut(s)	153, 280, 334, 408
Eco88I	CYCGRG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	479
EcoICRI	GAGCTC	4 cut(s)	153, 280, 334, 408
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	192, 475
EcoT38I	GRGCYC	4 cut(s)	155, 282, 336, 410
FaiI	YATR	5 cut(s)	12, 213, 318, 374, 389
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	6, 166, 169, 417
FokI	GGATG	3 cut(s)	275, 471, 506
FriOI	GRGCYC	4 cut(s)	155, 282, 336, 410
Fsp4HI	GCNGC	4 cut(s)	6, 166, 169, 417
FspBI	CTAG	1 cut(s)	556
GluI	GCNGC	4 cut(s)	6, 166, 169, 417
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	401
HinfI	GANTC	6 cut(s)	17, 71, 80, 218, 303, 425
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	4 cut(s)	272, 329, 356, 488
Hpy8I	GTNNAC	1 cut(s)	537
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	122, 200, 493
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4V	TGCA	3 cut(s)	419, 537, 552
HpyF3I	CTNAG	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	235, 268, 295, 465
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	118, 150
Lsp1109I	GCAGC	3 cut(s)	17, 180, 403
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	1 cut(s)	556
MaeIII	GTNAC	3 cut(s)	338, 365, 479
MalI	GATC	4 cut(s)	237, 270, 297, 467
MbiI	CCGCTC	2 cut(s)	121, 165
MboI	GATC	4 cut(s)	235, 268, 295, 465
MfeI	CAATTG	1 cut(s)	457
MflI	RGATCY	3 cut(s)	268, 295, 465
MhlI	GDGCHC	6 cut(s)	155, 282, 336, 410, 523, 539
MluCI	AATT	3 cut(s)	134, 324, 457
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	52, 118, 223, 237, 259, 484, 498
MroXI	GAANNNNTTC	1 cut(s)	324
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	194, 477
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	194, 477
NdeII	GATC	4 cut(s)	235, 268, 295, 465
NmuCI	GTSAC	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	5 cut(s)	17, 80, 218, 303, 425
PkrI	GCNGC	4 cut(s)	7, 167, 170, 418
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp124BI	GAGCTC	4 cut(s)	155, 282, 336, 410
Psp6I	CCWGG	2 cut(s)	192, 475
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	192, 475
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	3 cut(s)	268, 295, 465
SacI	GAGCTC	4 cut(s)	155, 282, 336, 410
SapI	GCTCTTC	1 cut(s)	439
SatI	GCNGC	4 cut(s)	6, 166, 169, 417
Sau3AI	GATC	4 cut(s)	235, 268, 295, 465
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	194, 477
SduI	GDGCHC	6 cut(s)	155, 282, 336, 410, 523, 539
SexAI	ACCWGGT	1 cut(s)	192
SinI	GGWCC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	134, 324, 457
SsiI	CCGC	2 cut(s)	121, 165
SspMI	CTAG	1 cut(s)	556
SstI	GAGCTC	4 cut(s)	155, 282, 336, 410
StyD4I	CCNGG	2 cut(s)	192, 475
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	15, 161, 242, 273
TasI	AATT	3 cut(s)	134, 324, 457
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	17, 80, 218, 303, 425
TscAI	CASTG	2 cut(s)	426, 544
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	3 cut(s)	5, 168, 416
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	426, 544
VneI	GTGCAC	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.