AT1G06110

SKP1 ASK-interacting protein 16

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1853059 .. 1855378
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06110.3

Sequence Viewer

Length: 1311 bp
ATGGGTCTAGAGGATGCTGGAGATTTGGTTCTCCACATCGTCTTATCCAAAATCGGCCCTGAAAACACCGCGAGAGTGGCTTGTGTCAGTAAACGCCTTAAGGTCTCCGCCTCCGAGGAATCTCTCTGGTCTATCTTCTGCTCCAATGATCTTAATATCTCTACTCCTCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAGAGAGCATATCAATTGTGGAGGGAGTCATTTAGAATGTATCCTTGGAATCTGGTTAAAAGAGTTAGACTTTGTTGGGACAACCTCAAACAATGGTTGACCTTAAACTTCCCTGAAGCAAAGGCAACACTGAGGAAAGGTGTCACAGAAGATGATCTTCAAGAATTCGAGACTTCTCTCAAAGTGAAACTTCCTTTGCCCACAAGGCTTCTCTACCGTTTCGTTGATGGTCAAGAGCTTTCTTCCCCCAATGGGCTTGATGGCTCTTTGGGGCTTATAGGTGGCTATTCCGCTTATTCTCATGACGTTAATGTCTACTTGCTACCTCTTAAGGAAGTGATGAGGGAGACAAAGGAAAGTTTCATGCGCGACCTCGGTTTCTCGAGTAGATTAGACCTTATTGTTATGGCTGCATCCGTAGTTGCCAGTCTGAAAATATTTTTATTAGACTGCACAACCGGACAGCTTTTTACTGGGACAAGTAACCGCCAATTGCTTCCTTGTGTACCCGATGCTTTGGTTAGATCGGTTCATGATACCAACGGCGATCAGCAACAGGATGCCATGCTGCTTTGGTTGGAAGAACATGGCCGGCGGTTACAAACCGGCACTATAAATGTCCGTCAACAGAACAATGTCAAGAGTATCAGTTTGTTCCCGGAGATTCCTCCCTTGTGTTCTGTCTCCGTAACTAATGGTGTGCAGGTACGTGCTTCGTCTGTTTTTATCCCGGAAATATCGAACCTTCGGGATCAGCCACCGGCATACTGGTATGCATATTCAATCCGGATGTCTCTCATGCCAGAAGGATGCATCTTGAATGGGACACATCATAGCTCTTGCCAACTGTATTGGAGACATTGGGTTATCCGAGCTGATAATGAAGTGATAGATAATGTTAATGGAGAAGCTGTCATAGGAAAGTACCCGCTCTTACAAGCCGGGGAGGAAGAGTTTGTGTATGAGAGTTGTTCCAGTTTTCCGACAACTGCTGGATCCATTGATGGCTCTTTCACCTTTGTACCTGGAAGTTTGAGAGATCCAAAAGGGAGTCAATTCGAAGTCAAAGTCGTAGAGTTTCCTCTGGAGTTACCGGACTACATCTTCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

48.98

Weight (kDa)

5.41

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
Acc36I ACCTGC 1 cut(s) 895
AccBSI CCGCTC 1 cut(s) 1132
AccI GTMKAC 1 cut(s) 516
AccII CGCG 2 cut(s) 71, 570
AccIII TCCGGA 1 cut(s) 987
AciI CCGC 6 cut(s) 69, 108, 492, 688, 796, 1130
AclWI GGATC 6 cut(s) 167, 179, 960, 1191, 1204, 1235
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 4 cut(s) 708, 909, 1127, 1224
AfiI CCNNNNNNNGG 1 cut(s) 453
AflII CTTAAG 2 cut(s) 98, 530
AgsI TTSAA 4 cut(s) 202, 362, 984, 1021
AjnI CCWGG 1 cut(s) 1225
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 5 cut(s) 439, 667, 1038, 1076, 1112
AluI AGCT 5 cut(s) 439, 667, 1038, 1076, 1112
Alw26I GTCTC 6 cut(s) 109, 365, 542, 889, 999, 1051
AlwI GGATC 6 cut(s) 167, 179, 960, 1191, 1204, 1235
Ama87I CYCGRG 1 cut(s) 583
Aor13HI TCCGGA 1 cut(s) 987
AoxI GGCC 2 cut(s) 55, 790
ApeKI GCWGC 2 cut(s) 611, 769
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 1254, 1286
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 3 cut(s) 860, 932, 1144
AsuHPI GGTGA 1 cut(s) 1207
AsuII TTCGAA 1 cut(s) 1260
AvaI CYCGRG 1 cut(s) 583
BaeI ACNNNNGTAYC 2 cut(s) 1206, 1239
BamHI GGATCC 1 cut(s) 1196
BbvI GCAGC 2 cut(s) 598, 756
BccI CCATC 3 cut(s) 422, 455, 1199
BceAI ACGGC 1 cut(s) 760
BciT130I CCWGG 1 cut(s) 1227
BciVI GTATCC 1 cut(s) 252
BcnI CCSGG 3 cut(s) 860, 932, 1144
BcoDI GTCTC 6 cut(s) 109, 365, 542, 889, 999, 1051
BfaI CTAG 1 cut(s) 8
BfrI CTTAAG 2 cut(s) 98, 530
BfuAI ACCTGC 1 cut(s) 895
BfuI GTATCC 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 406
BisI GCNGC 2 cut(s) 612, 770
BlsI GCNGC 2 cut(s) 613, 771
Bme1390I CCNGG 4 cut(s) 860, 932, 1144, 1227
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 1198
BmrFI CCNGG 4 cut(s) 860, 932, 1144, 1227
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 6 cut(s) 4, 623, 703, 751, 1001, 1023
BmuI ACTGGG 1 cut(s) 684
BpmI CTGGAG 2 cut(s) 39, 1307
Bpu14I TTCGAA 1 cut(s) 1260
BpuMI CCSGG 3 cut(s) 860, 932, 1144
BsaAI YACGTR 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 5 cut(s) 114, 178, 245, 574, 1143
BsaWI WCCGGW 3 cut(s) 659, 987, 1294
BsaXI ACNNNNNCTCC 6 cut(s) 12, 42, 1098, 1128, 1139, 1169
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse118I RCCGGY 3 cut(s) 792, 806, 961
Bse1I ACTGG 4 cut(s) 627, 679, 974, 1176
BseAI TCCGGA 1 cut(s) 987
BseBI CCWGG 1 cut(s) 1227
BseDI CCNNGG 5 cut(s) 114, 178, 245, 574, 1143
BseGI GGATG 5 cut(s) 19, 614, 766, 996, 1016
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 4 cut(s) 627, 679, 974, 1176
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 598, 756
BsgI GTGCAG 2 cut(s) 637, 923
Bsh1236I CGCG 2 cut(s) 71, 570
BshFI GGCC 2 cut(s) 57, 792
BsiHKCI CYCGRG 1 cut(s) 583
BsiSI CCGG 9 cut(s) 660, 793, 807, 860, 932, 962, 988, 1143, 1295
BslFI GGGAC 3 cut(s) 293, 691, 1039
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 6 cut(s) 109, 365, 542, 889, 999, 1051
BsmFI GGGAC 3 cut(s) 293, 691, 1039
BsnI GGCC 2 cut(s) 57, 792
Bso31I GGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 583
Bsp119I TTCGAA 1 cut(s) 1260
Bsp13I TCCGGA 1 cut(s) 987
Bsp143I GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 6 cut(s) 69, 108, 492, 688, 796, 1130
BspANI GGCC 2 cut(s) 57, 792
BspCNI CTCAG 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 987
BspFNI CGCG 2 cut(s) 71, 570
BspHI TCATGA 2 cut(s) 502, 733
BspLI GGNNCC 1 cut(s) 1198
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 6 cut(s) 167, 179, 960, 1191, 1204, 1235
BspT104I TTCGAA 1 cut(s) 1260
BspTI CTTAAG 2 cut(s) 98, 530
BspTNI GGTCTC 1 cut(s) 109
BsrBI CCGCTC 1 cut(s) 1132
BsrFI RCCGGY 3 cut(s) 792, 806, 961
BsrI ACTGG 4 cut(s) 627, 679, 974, 1176
BssAI RCCGGY 3 cut(s) 792, 806, 961
BssECI CCNNGG 5 cut(s) 114, 178, 245, 574, 1143
BssMI GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
BssT1I CCWWGG 2 cut(s) 178, 245
Bst2UI CCWGG 1 cut(s) 1227
Bst4CI ACNGT 2 cut(s) 419, 1050
Bst6I CTCTTC 1 cut(s) 1146
BstAFI CTTAAG 2 cut(s) 98, 530
BstBAI YACGTR 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 1260
BstC8I GCNNGC 1 cut(s) 794
BstDEI CTNAG 1 cut(s) 332
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 5 cut(s) 19, 614, 766, 996, 1016
BstFNI CGCG 2 cut(s) 71, 570
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 9 cut(s) 151, 175, 187, 358, 728, 751, 955, 1199, 1243
BstMAI GTCTC 6 cut(s) 109, 365, 542, 889, 999, 1051
BstMBI GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
BstMWI GCNNNNNNNGC 2 cut(s) 77, 406
BstNI CCWGG 1 cut(s) 1227
BstSCI CCNGG 4 cut(s) 858, 930, 1142, 1225
BstUI CGCG 2 cut(s) 71, 570
BstV1I GCAGC 2 cut(s) 598, 756
BstX2I RGATCY 3 cut(s) 184, 1196, 1240
BstYI RGATCY 3 cut(s) 184, 1196, 1240
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 57, 792
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 5 cut(s) 19, 614, 766, 996, 1016
BtsIMutI CAGTG 1 cut(s) 329
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 1 cut(s) 794
CciI TCATGA 2 cut(s) 502, 733
CfoI GCGC 1 cut(s) 570
Cfr10I RCCGGY 3 cut(s) 792, 806, 961
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 4 cut(s) 707, 908, 1126, 1223
CviAII CATG 7 cut(s) 179, 503, 565, 734, 766, 788, 1000
CviQI GTAC 4 cut(s) 707, 908, 1126, 1223
DdeI CTNAG 1 cut(s) 332
DpnI GATC 9 cut(s) 150, 174, 186, 357, 727, 750, 954, 1198, 1242
DpnII GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 1146
EarI CTCTTC 1 cut(s) 1146
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 178, 245
Eco31I GGTCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 583
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 1225
EcoT14I CCWWGG 2 cut(s) 178, 245
EcoT22I ATGCAT 2 cut(s) 979, 1016
ErhI CCWWGG 2 cut(s) 178, 245
FaeI CATG 7 cut(s) 182, 506, 568, 737, 769, 791, 1003
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 375, 407
FaqI GGGAC 3 cut(s) 293, 691, 1039
FatI CATG 7 cut(s) 178, 502, 564, 733, 765, 787, 999
FauI CCCGC 1 cut(s) 1137
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 612, 770
FokI GGATG 5 cut(s) 26, 601, 773, 1003, 1023
Fsp4HI GCNGC 2 cut(s) 612, 770
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 569
GluI GCNGC 2 cut(s) 612, 770
GsuI CTGGAG 2 cut(s) 39, 1307
HaeIII GGCC 2 cut(s) 57, 792
HapII CCGG 9 cut(s) 660, 793, 807, 860, 932, 962, 988, 1143, 1295
HhaI GCGC 1 cut(s) 570
Hin1II CATG 7 cut(s) 182, 506, 568, 737, 769, 791, 1003
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HincII GTYRAC 2 cut(s) 300, 827
HindII GTYRAC 2 cut(s) 300, 827
HinfI GANTC 5 cut(s) 119, 227, 250, 865, 1252
HpaII CCGG 9 cut(s) 660, 793, 807, 860, 932, 962, 988, 1143, 1295
HphI GGTGA 1 cut(s) 1207
Hpy166II GTNNAC 5 cut(s) 92, 300, 517, 707, 827
Hpy188I TCNGA 5 cut(s) 115, 633, 1073, 1185, 1310
Hpy8I GTNNAC 5 cut(s) 92, 300, 517, 707, 827
HpyAV CCTTC 4 cut(s) 204, 208, 956, 1001
HpyCH4III ACNGT 2 cut(s) 419, 1050
HpyCH4IV ACGT 2 cut(s) 507, 910
HpyCH4V TGCA 5 cut(s) 614, 654, 904, 977, 1014
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 406
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 2 cut(s) 507, 910
Hsp92II CATG 7 cut(s) 182, 506, 568, 737, 769, 791, 1003
HspAI GCGC 1 cut(s) 568
Kpn2I TCCGGA 1 cut(s) 987
KroI GCCGGC 1 cut(s) 792
KroNI GCCGGC 1 cut(s) 794
Kzo9I GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
LmnI GCTCC 2 cut(s) 146, 196
Lsp1109I GCAGC 2 cut(s) 598, 756
LweI GCATC 6 cut(s) 4, 623, 703, 751, 1001, 1023
MaeI CTAG 1 cut(s) 8
MaeII ACGT 2 cut(s) 507, 910
MaeIII GTNAC 5 cut(s) 343, 683, 798, 889, 1290
MalI GATC 9 cut(s) 150, 174, 186, 357, 727, 750, 954, 1198, 1242
MbiI CCGCTC 1 cut(s) 1132
MboI GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
MboII GAAGA 7 cut(s) 127, 350, 362, 435, 794, 1163, 1297
MfeI CAATTG 2 cut(s) 215, 692
MflI RGATCY 3 cut(s) 184, 1196, 1240
MluCI AATT 4 cut(s) 215, 365, 692, 1256
MlyI GAGTC 2 cut(s) 236, 1261
MmeI TCCRAC 2 cut(s) 759, 1208
Mph1103I ATGCAT 2 cut(s) 979, 1016
MroI TCCGGA 1 cut(s) 987
MroNI GCCGGC 1 cut(s) 792
MseI TTAA 7 cut(s) 99, 153, 258, 305, 510, 531, 1101
MspCI CTTAAG 2 cut(s) 98, 530
MspI CCGG 9 cut(s) 660, 793, 807, 860, 932, 962, 988, 1143, 1295
MspR9I CCNGG 4 cut(s) 860, 932, 1144, 1227
MunI CAATTG 2 cut(s) 215, 692
MvaI CCWGG 1 cut(s) 1227
MvnI CGCG 2 cut(s) 71, 570
MwoI GCNNNNNNNGC 2 cut(s) 77, 406
NaeI GCCGGC 1 cut(s) 794
NciI CCSGG 3 cut(s) 860, 932, 1144
NcoI CCATGG 1 cut(s) 178
NdeII GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
NgoMIV GCCGGC 1 cut(s) 792
NlaIII CATG 7 cut(s) 182, 506, 568, 737, 769, 791, 1003
NlaIV GGNNCC 1 cut(s) 1198
NmuCI GTSAC 1 cut(s) 343
NsiI ATGCAT 2 cut(s) 979, 1016
NspV TTCGAA 1 cut(s) 1260
PaeR7I CTCGAG 1 cut(s) 583
PagI TCATGA 2 cut(s) 502, 733
PdiI GCCGGC 1 cut(s) 794
PfeI GAWTC 3 cut(s) 119, 250, 865
PfoI TCCNGGA 2 cut(s) 858, 930
PkrI GCNGC 2 cut(s) 613, 771
PleI GAGTC 2 cut(s) 235, 1260
PpsI GAGTC 2 cut(s) 235, 1260
Ppu21I YACGTR 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 1225
PspGI CCWGG 1 cut(s) 1225
PspN4I GGNNCC 1 cut(s) 1198
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 3 cut(s) 184, 1196, 1240
RsaI GTAC 4 cut(s) 708, 909, 1127, 1224
RsaNI GTAC 4 cut(s) 707, 908, 1126, 1223
SaqAI TTAA 7 cut(s) 99, 153, 258, 305, 510, 531, 1101
SatI GCNGC 2 cut(s) 612, 770
Sau3AI GATC 9 cut(s) 148, 172, 184, 355, 725, 748, 952, 1196, 1240
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 2 cut(s) 236, 1261
ScrFI CCNGG 4 cut(s) 860, 932, 1144, 1227
SfaNI GCATC 6 cut(s) 4, 623, 703, 751, 1001, 1023
Sfr274I CTCGAG 1 cut(s) 583
SfuI TTCGAA 1 cut(s) 1260
SlaI CTCGAG 1 cut(s) 583
SmlI CTYRAG 3 cut(s) 98, 530, 583
SmoI CTYRAG 3 cut(s) 98, 530, 583
Sse9I AATT 4 cut(s) 215, 365, 692, 1256
SsiI CCGC 6 cut(s) 69, 108, 492, 688, 796, 1130
SspI AATATT 1 cut(s) 639
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 858, 930, 1142, 1225
StyI CCWWGG 2 cut(s) 178, 245
TaaI ACNGT 2 cut(s) 419, 1050
TaiI ACGT 2 cut(s) 510, 913
TaqI TCGA 5 cut(s) 171, 369, 584, 941, 1260
TasI AATT 4 cut(s) 215, 365, 692, 1256
TfiI GAWTC 3 cut(s) 119, 250, 865
Tru1I TTAA 7 cut(s) 99, 153, 258, 305, 510, 531, 1101
Tru9I TTAA 7 cut(s) 99, 153, 258, 305, 510, 531, 1101
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 2 cut(s) 611, 769
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 553, 722, 1098
TspGWI ACGGA 3 cut(s) 607, 812, 877
TspRI CASTG 1 cut(s) 336
Vha464I CTTAAG 2 cut(s) 98, 530
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 966
XhoI CTCGAG 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 1 cut(s) 8
Zsp2I ATGCAT 2 cut(s) 979, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.