RLG00000008768

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
36767416 .. 36773002
5587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008768

Sequence Viewer

Length: 1323 bp
ATGGGTTTGGAGGCAGTGGGTGATCTAGCGCTACACATAATCCTGCGCAAGTTAGGAGCTGAAGAGTCAGGGAGAGCCGCCTGCGTCAGCAAGCAACTCAGAGCTTCGGCCTCTGAAGAACCTCTTTGGTCCCATTTCTGTGCCCAGGAGCTCCACCTCTCACAACCCTTGGATCCTCATGGCAACCTTGCTCCTTCTTTCAAGGCATGTTATCAATCATGGCGGGAATCTTTTCATATGTATCCTTGGTCCCTTGTCAAGCGAGTCAAAAGGTGTTGGGGCAAAATTACAAACTGGCTGACTCTTAATTTCCCAGAGGCTCAGTCTACGCTTAACAAAGGTGCATCAGAAGCTGACATTCAAGAGTTGGAGAACACATTGAAAGTAAAACTTCCTCTCCCAACCAGGATTCTCTATCGTTTTCATGACGGTCAAGATTTAGAGGACAAGAATTGGGCAATTAGCGGAAATGTCACTCTACTGGGCCTCATAGGTGGTTATTCTTTTTATGACCGCATGGTAAATGTCTGCCTGTTGCCTTTACATCAGATAGTATTAGAAACAAAGGACATCATGGAAGAGCTTCATTTTTCAGCAACACCAGATTATATTGTTGTGGCTGCTTCTTCTACACATAGCCAAAAGTTGTTTTTCCTCAACTGTACAATTGGTCAACTCTGTGTTGGTACGGCCAACCTTGGTGAAATGCTTCCTTGTGTACCGAATGCGTTGGTTAATTCAGTTCATGATTACAATGGTGATCAACAACAGGATGCCATGCTTCTTTGGTTGGAAGAACACGGCCGCCGTCTAGAAAATGGAATTATTAAACTCCGAGAACAAGAAAATATGAGAAGCATCAGTCAGTTTCCAGAGGAACCCCCTCTATGTTCCACTGCCATAACAAGTGGCGTACAGGTTCGTTGTTCTTCGGTCTTTGTCCCGGAGTTTACTAATCTTCAAGATACAGTCCAGAAGTACTTTTTTTCCTATTCAATTCGCATGTCGCTTGTACCTGAAGGATGTAGCATCAATGGAATGACATTCAACTCTTGCCAACTGCTTTCGAGGCACTGGGTCATTCGTGCTGGTGATGTTGTGGTAGGTAATGTAAATGCAGAGGCTGTTATAGGAAAGTACCCTCTCTTGTGTCCAGGTGAGCCAGAATTTGTATATGAGAGTTGCACGCCGCTGCCATCTTTGTCGGGTTCTATAGAAGGGTTTTTTGTGTTTGTCCCAGGCAGGTTGGCGGACCCAAAAGGCGGAGGATTTAAAGTTGTAGCTGCACGCTTTCCCCTCCAGCTGCCAGACTACATCTTCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

49.09

Weight (kDa)

5.68

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMI1_KNR4 PF09346 114 - 209 8.9e-06 SMI1 / KNR4 family (SUKH-1)
DUF525 PF04379 321 - 412 9.4e-20 ApaG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 1233
AccI GTMKAC 1 cut(s) 326
AciI CCGC 8 cut(s) 78, 223, 465, 514, 805, 1190, 1250, 1263
AclWI GGATC 2 cut(s) 167, 180
AcoI YGGCCR 2 cut(s) 690, 802
AcsI RAATTY 1 cut(s) 1166
AcuI CTGAAG 3 cut(s) 81, 135, 1038
AfaI GTAC 7 cut(s) 664, 688, 720, 915, 980, 1014, 1139
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 1262
AgsI TTSAA 6 cut(s) 202, 362, 382, 962, 996, 1048
AjnI CCWGG 4 cut(s) 144, 404, 1153, 1237
AluBI AGCT 7 cut(s) 59, 104, 151, 353, 583, 1283, 1303
AluI AGCT 7 cut(s) 59, 104, 151, 353, 583, 1283, 1303
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 2 cut(s) 167, 180
AlwNI CAGNNNCTG 2 cut(s) 353, 1124
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 4 cut(s) 108, 484, 690, 802
ApeKI GCWGC 4 cut(s) 620, 1192, 1283, 1303
ApoI RAATTY 1 cut(s) 1166
Asp700I GAANNNNTTC 3 cut(s) 231, 582, 708
AspLEI GCGC 2 cut(s) 31, 48
AspS9I GGNCC 4 cut(s) 129, 249, 484, 1252
AsuC2I CCSGG 1 cut(s) 944
AsuHPI GGTGA 5 cut(s) 32, 713, 770, 1103, 1169
AvaII GGWCC 3 cut(s) 129, 249, 1252
BaeGI GKGCMC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 607, 1179, 1270, 1290
BccI CCATC 1 cut(s) 1204
BceAI ACGGC 3 cut(s) 705, 792, 817
BciT130I CCWGG 4 cut(s) 146, 406, 1155, 1239
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 944
BfaI CTAG 2 cut(s) 26, 812
BfmI CTRYAG 1 cut(s) 1212
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 1233
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 7 cut(s) 78, 621, 805, 1190, 1193, 1284, 1304
BlsI GCNGC 7 cut(s) 79, 622, 806, 1191, 1194, 1285, 1305
BmcAI AGTACT 1 cut(s) 980
Bme1390I CCNGG 5 cut(s) 146, 406, 944, 1155, 1239
Bme18I GGWCC 3 cut(s) 129, 249, 1252
BmgT120I GGNCC 4 cut(s) 129, 249, 484, 1252
BmiI GGNNCC 5 cut(s) 131, 174, 251, 879, 1254
BmrFI CCNGG 5 cut(s) 146, 406, 944, 1155, 1239
BmrI ACTGGG 2 cut(s) 491, 1084
BmsI GCATC 4 cut(s) 353, 763, 867, 1038
BmuI ACTGGG 2 cut(s) 491, 1084
BpmI CTGGAG 1 cut(s) 1283
BpuMI CCSGG 1 cut(s) 944
BsaJI CCNNGG 5 cut(s) 144, 168, 245, 697, 1237
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 1262
Bse1I ACTGG 3 cut(s) 299, 486, 1079
BseBI CCWGG 4 cut(s) 146, 406, 1155, 1239
BseDI CCNNGG 5 cut(s) 144, 168, 245, 697, 1237
BseGI GGATG 2 cut(s) 778, 1028
BseLI CCNNNNNNNGG 1 cut(s) 1262
BseMII CTCAG 2 cut(s) 112, 335
BseNI ACTGG 3 cut(s) 299, 486, 1079
BseSI GKGCMC 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 802
BseXI GCAGC 4 cut(s) 607, 1179, 1270, 1290
BsgI GTGCAG 1 cut(s) 1269
Bsh1285I CGRYCG 1 cut(s) 805
BshFI GGCC 4 cut(s) 110, 486, 692, 804
BsiEI CGRYCG 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 944
BslFI GGGAC 4 cut(s) 115, 235, 926, 1220
BslI CCNNNNNNNGG 1 cut(s) 1262
BsmFI GGGAC 4 cut(s) 115, 235, 926, 1220
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 4 cut(s) 110, 486, 692, 804
Bsp1286I GDGCHC 2 cut(s) 145, 153
Bsp1407I TGTACA 1 cut(s) 662
Bsp143I GATC 3 cut(s) 22, 172, 760
BspACI CCGC 8 cut(s) 78, 223, 465, 514, 805, 1190, 1250, 1263
BspANI GGCC 4 cut(s) 110, 486, 692, 804
BspCNI CTCAG 2 cut(s) 111, 334
BspHI TCATGA 2 cut(s) 424, 745
BspLI GGNNCC 5 cut(s) 131, 174, 251, 879, 1254
BspMI ACCTGC 1 cut(s) 1233
BspPI GGATC 2 cut(s) 167, 180
BspQI GCTCTTC 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 662
BsrI ACTGG 3 cut(s) 299, 486, 1079
BssECI CCNNGG 5 cut(s) 144, 168, 245, 697, 1237
BssMI GATC 3 cut(s) 22, 172, 760
BssT1I CCWWGG 3 cut(s) 168, 245, 697
Bst2UI CCWGG 4 cut(s) 146, 406, 1155, 1239
Bst4CI ACNGT 3 cut(s) 431, 662, 970
Bst6I CTCTTC 2 cut(s) 57, 573
BstAUI TGTACA 1 cut(s) 662
BstC8I GCNNGC 4 cut(s) 82, 92, 1187, 1288
BstDEI CTNAG 2 cut(s) 98, 321
BstF5I GGATG 2 cut(s) 778, 1028
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 31, 48
BstKTI GATC 3 cut(s) 25, 175, 763
BstMBI GATC 3 cut(s) 22, 172, 760
BstMCI CGRYCG 1 cut(s) 805
BstMWI GCNNNNNNNGC 2 cut(s) 350, 1069
BstNI CCWGG 4 cut(s) 146, 406, 1155, 1239
BstNSI RCATGY 2 cut(s) 210, 1006
BstSCI CCNGG 5 cut(s) 144, 404, 942, 1153, 1237
BstSFI CTRYAG 1 cut(s) 1212
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 4 cut(s) 607, 1179, 1270, 1290
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 802
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 4 cut(s) 110, 486, 692, 804
BtsCI GGATG 2 cut(s) 778, 1028
BtsI GCAGTG 2 cut(s) 21, 894
BtsIMutI CAGTG 3 cut(s) 21, 894, 1072
BveI ACCTGC 1 cut(s) 1233
Cac8I GCNNGC 4 cut(s) 82, 92, 1187, 1288
CaiI CAGNNNCTG 2 cut(s) 353, 1124
CciI TCATGA 2 cut(s) 424, 745
CfoI GCGC 2 cut(s) 31, 48
Cfr13I GGNCC 4 cut(s) 129, 249, 484, 1252
CseI GACGC 1 cut(s) 73
Csp6I GTAC 7 cut(s) 663, 687, 719, 914, 979, 1013, 1138
CviAII CATG 9 cut(s) 179, 207, 219, 425, 517, 574, 746, 778, 1003
CviQI GTAC 7 cut(s) 663, 687, 719, 914, 979, 1013, 1138
DdeI CTNAG 2 cut(s) 98, 321
DpnI GATC 3 cut(s) 24, 174, 762
DpnII GATC 3 cut(s) 22, 172, 760
DraI TTTAAA 1 cut(s) 1273
EaeI YGGCCR 2 cut(s) 690, 802
EagI CGGCCG 1 cut(s) 802
Eam1104I CTCTTC 2 cut(s) 57, 573
EarI CTCTTC 2 cut(s) 57, 573
EciI GGCGGA 2 cut(s) 1265, 1278
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 802
Eco130I CCWWGG 3 cut(s) 168, 245, 697
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 129, 249, 1252
Eco47III AGCGCT 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 81, 135, 1038
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 4 cut(s) 144, 404, 1153, 1237
EcoT14I CCWWGG 3 cut(s) 168, 245, 697
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 168, 245, 697
FaeI CATG 9 cut(s) 182, 210, 222, 428, 520, 577, 749, 781, 1006
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 375, 407
FaqI GGGAC 4 cut(s) 115, 235, 926, 1220
FatI CATG 9 cut(s) 178, 206, 218, 424, 516, 573, 745, 777, 1002
FauI CCCGC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 237
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 7 cut(s) 78, 621, 805, 1190, 1193, 1284, 1304
FokI GGATG 2 cut(s) 785, 1035
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 7 cut(s) 78, 621, 805, 1190, 1193, 1284, 1304
FspBI CTAG 2 cut(s) 26, 812
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 2 cut(s) 30, 47
GluI GCNGC 7 cut(s) 78, 621, 805, 1190, 1193, 1284, 1304
GsuI CTGGAG 1 cut(s) 1283
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 4 cut(s) 110, 486, 692, 804
HapII CCGG 1 cut(s) 944
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 31, 48
Hin1II CATG 9 cut(s) 182, 210, 222, 428, 520, 577, 749, 781, 1006
Hin6I GCGC 2 cut(s) 29, 46
HinP1I GCGC 2 cut(s) 29, 46
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HinfI GANTC 5 cut(s) 65, 227, 264, 301, 409
HpaII CCGG 1 cut(s) 944
HphI GGTGA 5 cut(s) 32, 713, 770, 1103, 1169
Hpy166II GTNNAC 4 cut(s) 327, 674, 719, 951
Hpy188I TCNGA 6 cut(s) 101, 115, 349, 549, 836, 1322
Hpy188III TCNNGA 8 cut(s) 362, 425, 434, 746, 812, 872, 962, 973
Hpy8I GTNNAC 4 cut(s) 327, 674, 719, 951
HpyAV CCTTC 3 cut(s) 204, 1013, 1211
HpyCH4III ACNGT 3 cut(s) 431, 662, 970
HpyCH4V TGCA 4 cut(s) 344, 1118, 1185, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 1069
HpyF3I CTNAG 2 cut(s) 98, 321
Hsp92II CATG 9 cut(s) 182, 210, 222, 428, 520, 577, 749, 781, 1006
HspAI GCGC 2 cut(s) 29, 46
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 3 cut(s) 22, 172, 760
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 4 cut(s) 56, 148, 156, 196
Lsp1109I GCAGC 4 cut(s) 607, 1179, 1270, 1290
LweI GCATC 4 cut(s) 353, 763, 867, 1038
MaeI CTAG 2 cut(s) 26, 812
MaeIII GTNAC 1 cut(s) 472
MalI GATC 3 cut(s) 24, 174, 762
MboI GATC 3 cut(s) 22, 172, 760
MboII GAAGA 8 cut(s) 74, 128, 590, 618, 806, 921, 950, 1309
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 145, 153
MluCI AATT 9 cut(s) 285, 307, 451, 459, 666, 736, 822, 996, 1166
MlyI GAGTC 3 cut(s) 74, 273, 295
MmeI TCCRAC 2 cut(s) 348, 771
MroXI GAANNNNTTC 3 cut(s) 231, 582, 708
MseI TTAA 5 cut(s) 306, 333, 735, 828, 1272
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 1192, 1303
MspI CCGG 1 cut(s) 944
MspR9I CCNGG 5 cut(s) 146, 406, 944, 1155, 1239
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 4 cut(s) 146, 406, 1155, 1239
MwoI GCNNNNNNNGC 2 cut(s) 350, 1069
NciI CCSGG 1 cut(s) 944
NdeI CATATG 1 cut(s) 237
NdeII GATC 3 cut(s) 22, 172, 760
NlaIII CATG 9 cut(s) 182, 210, 222, 428, 520, 577, 749, 781, 1006
NlaIV GGNNCC 5 cut(s) 131, 174, 251, 879, 1254
NmuCI GTSAC 1 cut(s) 472
NsbI TGCGCA 1 cut(s) 47
NspI RCATGY 2 cut(s) 210, 1006
PagI TCATGA 2 cut(s) 424, 745
PciSI GCTCTTC 1 cut(s) 573
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 3 cut(s) 231, 582, 708
PfeI GAWTC 2 cut(s) 227, 409
PfoI TCCNGGA 1 cut(s) 942
PkrI GCNGC 7 cut(s) 79, 622, 806, 1191, 1194, 1285, 1305
PleI GAGTC 3 cut(s) 73, 272, 295
PpsI GAGTC 3 cut(s) 73, 272, 295
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 4 cut(s) 144, 404, 1153, 1237
PspGI CCWGG 4 cut(s) 144, 404, 1153, 1237
PspN4I GGNNCC 5 cut(s) 131, 174, 251, 879, 1254
PspPI GGNCC 4 cut(s) 129, 249, 484, 1252
PstNI CAGNNNCTG 2 cut(s) 353, 1124
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 1303
RsaI GTAC 7 cut(s) 664, 688, 720, 915, 980, 1014, 1139
RsaNI GTAC 7 cut(s) 663, 687, 719, 914, 979, 1013, 1138
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 5 cut(s) 306, 333, 735, 828, 1272
SatI GCNGC 7 cut(s) 78, 621, 805, 1190, 1193, 1284, 1304
Sau3AI GATC 3 cut(s) 22, 172, 760
Sau96I GGNCC 4 cut(s) 129, 249, 484, 1252
ScaI AGTACT 1 cut(s) 980
SchI GAGTC 3 cut(s) 74, 273, 295
ScrFI CCNGG 5 cut(s) 146, 406, 944, 1155, 1239
SduI GDGCHC 2 cut(s) 145, 153
SfaNI GCATC 4 cut(s) 353, 763, 867, 1038
SfcI CTRYAG 1 cut(s) 1212
SinI GGWCC 3 cut(s) 129, 249, 1252
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 9 cut(s) 285, 307, 451, 459, 666, 736, 822, 996, 1166
SsiI CCGC 8 cut(s) 78, 223, 465, 514, 805, 1190, 1250, 1263
SspMI CTAG 2 cut(s) 26, 812
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 5 cut(s) 144, 404, 942, 1153, 1237
StyI CCWWGG 3 cut(s) 168, 245, 697
TaaI ACNGT 3 cut(s) 431, 662, 970
TaqI TCGA 1 cut(s) 1067
TaqII GACCGA 1 cut(s) 922
TasI AATT 9 cut(s) 285, 307, 451, 459, 666, 736, 822, 996, 1166
TatI WGTACW 2 cut(s) 662, 978
TauI GCSGC 3 cut(s) 80, 807, 1192
TfiI GAWTC 2 cut(s) 227, 409
Tru1I TTAA 5 cut(s) 306, 333, 735, 828, 1272
Tru9I TTAA 5 cut(s) 306, 333, 735, 828, 1272
TscAI CASTG 3 cut(s) 21, 901, 1079
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 620, 1192, 1283, 1303
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 4 cut(s) 224, 413, 575, 734
TspRI CASTG 3 cut(s) 21, 901, 1079
VpaK11BI GGWCC 3 cut(s) 129, 249, 1252
XapI RAATTY 1 cut(s) 1166
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 2 cut(s) 210, 1006
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 3 cut(s) 231, 582, 708
XspI CTAG 2 cut(s) 26, 812
ZrmI AGTACT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.