Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000186.1

Orthogroup ID

OG0006360

Physical Location & Seq

Genomic Coordinates Reverse (-)

124818 .. 130282

Gene Structure 5465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000186.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgggtttggaggcagtgggtgatctagcgctacacataatccttcgcaagttaggagctgaagagtcagggagagccgcctgcgtcagcaagcaactcagagcttcggcctctgaagaacctctttggtcccatttctgtgcccaggagctccacctctcacaacccttggatcctcatggcaaccttgctccttctttcaaggcatgttatcaatcatggcgggaatcttttcatatgtatccttggtcccttgtcaagcgagtcaaaaggtgttggggcaaaattaccaactggctgactcttaatttcccagaggctcagtctacgcttaacaaaggtgcatcagaagctgacattcaagagttggagaacacattgaaagtaaaacttcccctcccaaccaggattctctatcgttttcatgacggtcaagatttagaggacaagaatcggtcaagtagccgaaatggcactctactgggcctcataggtggttattctttttatgaccgcatggttaatgtctgcttgttgcctttacatcagatagtattagcaacaaaggacatcatggaaacgcttgatttttcagcaacaccagattatattgttgtggctgcttctacatatagccaaaagttgtttttcctcaactgtactagtggtcaactctatgttggtacggccaaccttgtgcttgatggtgaaatgcttccttgtgtaccgaatgcgttggttaattcagttcatgattacaacggtgatcgacagcaggatgccatgcttctttggttggaagaacatggccgccgtctagaaaatggaattattaaactccgtgaacaacaaactatgagaagcatctgtcagtttccagaggaaccccctctctgttccactgccgtaacaagtggcgtacaggttcgttgttcttcggtctttgtcccggagtttactaatcttcaagataccatccagaagtactttttttcctattcaattcgcatgtcgcttgtacctgaaggatgtagcatcaatggaatgacattcaactcttgccaactgctttcgaggcactgggtcattcgtgctggtgatgttgtggtaggtagtgtaaatggagaggctgttataggaaagtaccctctcttgcgtccaggtgagccagaatttgtatatgagagttgcacgcagcagccatctttgtcaggttctatagaaggtttttttgtgtttgtcccgggcaggttggcggacccaaaaggtggaggatttaaagttccagctgcacgctttcccctccagctgccagactacatcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF525 F-box SMI1_KNR4

Protein Analysis

442

Amino Acids

49.39

Weight (kDa)

6.09

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06110 AT1G06110 AT1G06110
fragaria_vesca	FvH4_4g10900 FvH4_4g10900 FvH4_4g10900
malus_domestica	MD04G1044900.v1.1
prunus_persica	Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1 Prupe.1G197800_v2.0.a1
pyrus_communis	pycom04g03860
rosa_chinensis	RchiOBHm_Chr4g0406481
rosa_laevigata	RLG00000008768
rosa_multiflora	Rmu_ssc0000186.1_g000022
rosa_roxburghii	Rroxscaffold_5G00351360
rosa_rugosa	Rorug04G0071800 Rorug04G0071900
rosa_samantha	Rh4AG138800 Rh4BG135800 Rh4CG146100 Rh4DG133200
rosa_wichuraiana	Rw4G011310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1239
AccB7I	CCANNNNNTGG	1 cut(s)	1268
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	5 cut(s)	78, 223, 514, 811, 1256
AclWI	GGATC	2 cut(s)	167, 180
AcoI	YGGCCR	2 cut(s)	687, 808
AcsI	RAATTY	1 cut(s)	1172
AcuI	CTGAAG	3 cut(s)	81, 135, 1044
AfaI	GTAC	7 cut(s)	661, 685, 726, 921, 986, 1020, 1145
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	1268
AgsI	TTSAA	6 cut(s)	202, 362, 382, 968, 1002, 1054
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	3 cut(s)	144, 404, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	1266, 1298
AluBI	AGCT	6 cut(s)	59, 104, 151, 353, 1289, 1309
AluI	AGCT	6 cut(s)	59, 104, 151, 353, 1289, 1309
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	167, 180
AlwNI	CAGNNNCTG	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	1243
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	4 cut(s)	108, 484, 687, 808
ApeKI	GCWGC	5 cut(s)	620, 1195, 1198, 1289, 1309
ApoI	RAATTY	1 cut(s)	1172
Asp700I	GAANNNNTTC	2 cut(s)	231, 714
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	4 cut(s)	129, 249, 484, 1258
AsuC2I	CCSGG	3 cut(s)	950, 1244, 1245
AsuHPI	GGTGA	5 cut(s)	32, 719, 776, 1109, 1175
AvaI	CYCGRG	1 cut(s)	1243
AvaII	GGWCC	3 cut(s)	129, 249, 1258
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	5 cut(s)	607, 1207, 1210, 1276, 1296
BccI	CCATC	3 cut(s)	698, 983, 1210
BceAI	ACGGC	3 cut(s)	702, 798, 890
BciT130I	CCWGG	3 cut(s)	146, 406, 1161
BciVI	GTATCC	1 cut(s)	252
BcnI	CCSGG	3 cut(s)	950, 1244, 1245
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	3 cut(s)	26, 663, 818
BfmI	CTRYAG	1 cut(s)	1218
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	1239
BfuI	GTATCC	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	471
BisI	GCNGC	7 cut(s)	78, 621, 811, 1196, 1199, 1290, 1310
BlsI	GCNGC	7 cut(s)	79, 622, 812, 1197, 1200, 1291, 1311
BmcAI	AGTACT	1 cut(s)	986
Bme1390I	CCNGG	6 cut(s)	146, 406, 950, 1161, 1244, 1245
Bme18I	GGWCC	3 cut(s)	129, 249, 1258
BmeT110I	CYCGRG	1 cut(s)	1243
BmgT120I	GGNCC	4 cut(s)	129, 249, 484, 1258
BmiI	GGNNCC	5 cut(s)	131, 174, 251, 885, 1260
BmrFI	CCNGG	6 cut(s)	146, 406, 950, 1161, 1244, 1245
BmrI	ACTGGG	2 cut(s)	491, 1090
BmsI	GCATC	4 cut(s)	353, 769, 873, 1044
BmuI	ACTGGG	2 cut(s)	491, 1090
BpmI	CTGGAG	1 cut(s)	1289
BpuMI	CCSGG	3 cut(s)	950, 1244, 1245
BsaJI	CCNNGG	4 cut(s)	144, 168, 245, 1243
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 411, 1116, 1146
Bsc4I	CCNNNNNNNGG	1 cut(s)	1268
Bse1I	ACTGG	3 cut(s)	299, 486, 1085
BseBI	CCWGG	3 cut(s)	146, 406, 1161
BseDI	CCNNGG	4 cut(s)	144, 168, 245, 1243
BseGI	GGATG	3 cut(s)	784, 975, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	1268
BseMII	CTCAG	2 cut(s)	112, 335
BseNI	ACTGG	3 cut(s)	299, 486, 1085
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	5 cut(s)	607, 1207, 1210, 1276, 1296
BsgI	GTGCAG	1 cut(s)	1275
BshFI	GGCC	4 cut(s)	110, 486, 689, 810
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	1243
BsiSI	CCGG	2 cut(s)	950, 1244
BslFI	GGGAC	4 cut(s)	115, 235, 932, 1226
BslI	CCNNNNNNNGG	1 cut(s)	1268
BsmFI	GGGAC	4 cut(s)	115, 235, 932, 1226
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	4 cut(s)	110, 486, 689, 810
BsoBI	CYCGRG	1 cut(s)	1243
Bsp1286I	GDGCHC	2 cut(s)	145, 153
Bsp143I	GATC	3 cut(s)	22, 172, 766
BspACI	CCGC	5 cut(s)	78, 223, 514, 811, 1256
BspANI	GGCC	4 cut(s)	110, 486, 689, 810
BspCNI	CTCAG	2 cut(s)	111, 334
BspHI	TCATGA	2 cut(s)	424, 751
BspLI	GGNNCC	5 cut(s)	131, 174, 251, 885, 1260
BspMI	ACCTGC	1 cut(s)	1239
BspPI	GGATC	2 cut(s)	167, 180
BsrI	ACTGG	3 cut(s)	299, 486, 1085
BssECI	CCNNGG	4 cut(s)	144, 168, 245, 1243
BssMI	GATC	3 cut(s)	22, 172, 766
BssT1I	CCWWGG	2 cut(s)	168, 245
Bst2UI	CCWGG	3 cut(s)	146, 406, 1161
Bst4CI	ACNGT	3 cut(s)	431, 659, 764
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	4 cut(s)	82, 92, 1193, 1294
BstDEI	CTNAG	2 cut(s)	98, 321
BstF5I	GGATG	3 cut(s)	784, 975, 1034
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	25, 175, 769
BstMBI	GATC	3 cut(s)	22, 172, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 471, 1075
BstNI	CCWGG	3 cut(s)	146, 406, 1161
BstNSI	RCATGY	2 cut(s)	210, 1012
BstSCI	CCNGG	6 cut(s)	144, 404, 948, 1159, 1242, 1243
BstSFI	CTRYAG	1 cut(s)	1218
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	5 cut(s)	607, 1207, 1210, 1276, 1296
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	4 cut(s)	110, 486, 689, 810
BtsCI	GGATG	3 cut(s)	784, 975, 1034
BtsI	GCAGTG	2 cut(s)	21, 900
BtsIMutI	CAGTG	3 cut(s)	21, 900, 1078
BveI	ACCTGC	1 cut(s)	1239
Cac8I	GCNNGC	4 cut(s)	82, 92, 1193, 1294
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	2 cut(s)	424, 751
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	4 cut(s)	129, 249, 484, 1258
Cfr9I	CCCGGG	1 cut(s)	1243
CseI	GACGC	2 cut(s)	73, 1145
Csp6I	GTAC	7 cut(s)	660, 684, 725, 920, 985, 1019, 1144
CviQI	GTAC	7 cut(s)	660, 684, 725, 920, 985, 1019, 1144
DdeI	CTNAG	2 cut(s)	98, 321
DpnI	GATC	3 cut(s)	24, 174, 768
DpnII	GATC	3 cut(s)	22, 172, 766
DraI	TTTAAA	1 cut(s)	1279
EaeI	YGGCCR	2 cut(s)	687, 808
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	1271
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	168, 245
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	129, 249, 1258
Eco47III	AGCGCT	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	3 cut(s)	81, 135, 1044
Eco88I	CYCGRG	1 cut(s)	1243
EcoICRI	GAGCTC	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	144, 404, 1159
EcoT14I	CCWWGG	2 cut(s)	168, 245
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	2 cut(s)	168, 245
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 375, 407
FaqI	GGGAC	4 cut(s)	115, 235, 932, 1226
FauI	CCCGC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	7 cut(s)	78, 621, 811, 1196, 1199, 1290, 1310
FokI	GGATG	3 cut(s)	791, 962, 1041
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	7 cut(s)	78, 621, 811, 1196, 1199, 1290, 1310
FspBI	CTAG	3 cut(s)	26, 663, 818
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	7 cut(s)	78, 621, 811, 1196, 1199, 1290, 1310
GsuI	CTGGAG	1 cut(s)	1289
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	4 cut(s)	110, 486, 689, 810
HapII	CCGG	2 cut(s)	950, 1244
HgaI	GACGC	2 cut(s)	73, 1145
HhaI	GCGC	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	671
HindII	GTYRAC	1 cut(s)	671
HinfI	GANTC	6 cut(s)	65, 227, 264, 301, 409, 451
HpaII	CCGG	2 cut(s)	950, 1244
HphI	GGTGA	5 cut(s)	32, 719, 776, 1109, 1175
Hpy166II	GTNNAC	5 cut(s)	327, 671, 725, 845, 957
Hpy188I	TCNGA	5 cut(s)	101, 115, 349, 549, 1328
Hpy188III	TCNNGA	8 cut(s)	362, 425, 434, 752, 818, 878, 968, 979
Hpy8I	GTNNAC	5 cut(s)	327, 671, 725, 845, 957
HpyAV	CCTTC	4 cut(s)	53, 204, 1019, 1217
HpyCH4III	ACNGT	3 cut(s)	431, 659, 764
HpyCH4V	TGCA	3 cut(s)	344, 1191, 1292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 471, 1075
HpyF3I	CTNAG	2 cut(s)	98, 321
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	22, 172, 766
LmnI	GCTCC	4 cut(s)	56, 148, 156, 196
Lsp1109I	GCAGC	5 cut(s)	607, 1207, 1210, 1276, 1296
LweI	GCATC	4 cut(s)	353, 769, 873, 1044
MaeI	CTAG	3 cut(s)	26, 663, 818
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	3 cut(s)	24, 174, 768
MboI	GATC	3 cut(s)	22, 172, 766
MboII	GAAGA	6 cut(s)	74, 128, 812, 927, 956, 1315
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	145, 153
MluCI	AATT	6 cut(s)	285, 307, 742, 828, 1002, 1172
MlyI	GAGTC	3 cut(s)	74, 273, 295
MmeI	TCCRAC	2 cut(s)	348, 777
MroXI	GAANNNNTTC	2 cut(s)	231, 714
MseI	TTAA	6 cut(s)	306, 333, 522, 741, 834, 1278
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	1289, 1309
MspI	CCGG	2 cut(s)	950, 1244
MspR9I	CCNGG	6 cut(s)	146, 406, 950, 1161, 1244, 1245
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	3 cut(s)	146, 406, 1161
MwoI	GCNNNNNNNGC	3 cut(s)	350, 471, 1075
NciI	CCSGG	3 cut(s)	950, 1244, 1245
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	3 cut(s)	22, 172, 766
NlaIV	GGNNCC	5 cut(s)	131, 174, 251, 885, 1260
NspI	RCATGY	2 cut(s)	210, 1012
PagI	TCATGA	2 cut(s)	424, 751
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	2 cut(s)	231, 714
PfeI	GAWTC	3 cut(s)	227, 409, 451
PflMI	CCANNNNNTGG	1 cut(s)	1268
PfoI	TCCNGGA	1 cut(s)	948
PkrI	GCNGC	7 cut(s)	79, 622, 812, 1197, 1200, 1291, 1311
PleI	GAGTC	3 cut(s)	73, 272, 295
PpsI	GAGTC	3 cut(s)	73, 272, 295
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	144, 404, 1159
PspGI	CCWGG	3 cut(s)	144, 404, 1159
PspN4I	GGNNCC	5 cut(s)	131, 174, 251, 885, 1260
PspPI	GGNCC	4 cut(s)	129, 249, 484, 1258
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	2 cut(s)	1289, 1309
RsaI	GTAC	7 cut(s)	661, 685, 726, 921, 986, 1020, 1145
RsaNI	GTAC	7 cut(s)	660, 684, 725, 920, 985, 1019, 1144
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	6 cut(s)	306, 333, 522, 741, 834, 1278
SatI	GCNGC	7 cut(s)	78, 621, 811, 1196, 1199, 1290, 1310
Sau3AI	GATC	3 cut(s)	22, 172, 766
Sau96I	GGNCC	4 cut(s)	129, 249, 484, 1258
ScaI	AGTACT	1 cut(s)	986
SchI	GAGTC	3 cut(s)	74, 273, 295
ScrFI	CCNGG	6 cut(s)	146, 406, 950, 1161, 1244, 1245
SduI	GDGCHC	2 cut(s)	145, 153
SfaNI	GCATC	4 cut(s)	353, 769, 873, 1044
SfcI	CTRYAG	1 cut(s)	1218
SinI	GGWCC	3 cut(s)	129, 249, 1258
SmaI	CCCGGG	1 cut(s)	1245
SmiMI	CAYNNNNRTG	1 cut(s)	138
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	6 cut(s)	285, 307, 742, 828, 1002, 1172
SsiI	CCGC	5 cut(s)	78, 223, 514, 811, 1256
SspMI	CTAG	3 cut(s)	26, 663, 818
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	6 cut(s)	144, 404, 948, 1159, 1242, 1243
StyI	CCWWGG	2 cut(s)	168, 245
TaaI	ACNGT	3 cut(s)	431, 659, 764
TaqI	TCGA	2 cut(s)	769, 1073
TaqII	GACCGA	2 cut(s)	444, 928
TasI	AATT	6 cut(s)	285, 307, 742, 828, 1002, 1172
TatI	WGTACW	2 cut(s)	659, 984
TauI	GCSGC	2 cut(s)	80, 813
TfiI	GAWTC	3 cut(s)	227, 409, 451
Tru1I	TTAA	6 cut(s)	306, 333, 522, 741, 834, 1278
Tru9I	TTAA	6 cut(s)	306, 333, 522, 741, 834, 1278
TscAI	CASTG	3 cut(s)	21, 907, 1085
TseI	GCWGC	5 cut(s)	620, 1195, 1198, 1289, 1309
TspDTI	ATGAA	3 cut(s)	224, 413, 740
TspGWI	ACGGA	1 cut(s)	830
TspMI	CCCGGG	1 cut(s)	1243
TspRI	CASTG	3 cut(s)	21, 907, 1085
Van91I	CCANNNNNTGG	1 cut(s)	1268
VpaK11BI	GGWCC	3 cut(s)	129, 249, 1258
XapI	RAATTY	1 cut(s)	1172
XbaI	TCTAGA	1 cut(s)	817
XceI	RCATGY	2 cut(s)	210, 1012
XmaI	CCCGGG	1 cut(s)	1243
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	2 cut(s)	231, 714
XspI	CTAG	3 cut(s)	26, 663, 818
ZrmI	AGTACT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.