AT1G07020

iron import into the mitochondrion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013020
Physical Location & Seq
Reverse (-)
2155213 .. 2156153
941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07020.1

Sequence Viewer

Length: 444 bp
ATGGAAGAGAACAACAACGCCGGGAGCGATTCCGACTCTAATTCCGTCGAAGATTCACAAGACTATTACGAACCGATCTCAGCCGTCGATTTATATAACTCCAACGACGATGAAGAAGACAGTTATCTTCCGATCGGTGGAGATGGTCTCTCTAACGGCCATTGTATGATTCCGGATGCAGAGGTAGGAATCTCTTCTATTAGTATAAACGATAACACAGACAGCGAAGAAGAGACAGAGACGGAGACTGGACCGGAGATCCGTAGAGCGTTTGAGGAGGACGAACGGCGGAGAAGATCGCCGTTAGTGGAGGAGAATGCCGTTAGGGTTATGGAGGCAATGCGAGCCATCTCATTCCCTGGAACGGCTCCTGATTGGGCCTCCGATGTTAATGAGGATCGTTGGATTGATCAGCTTCGAAGATTGAGAACCACTTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.51

Weight (kDa)

4.05

Isoelectric Point (pI)

79.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MEA1 PF06910 54 - 141 2.6e-09 Male enhanced antigen 1 (MEA1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07020
fragaria_vesca FvH4_3g21494 FvH4_3g39700 FvH4_3g39700
malus_domestica MD03G1055700.v1.1
prunus_persica Prupe.6G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071561
rosa_laevigata RLG00000013433 RLG00000036225
rosa_multiflora Rmu_sc0000031.1_g000030 Rmu_sc0005745.1_g000008
rosa_roxburghii Rroxscaffold_1G00009610
rosa_rugosa Rorug05G0413200
rosa_samantha Rh5AG469100 Rh5BG488300 Rh5DG499100
rosa_wichuraiana Rw5G043590 Rw6G041020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 1 cut(s) 289
AclWI GGATC 2 cut(s) 253, 405
AcoI YGGCCR 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 137, 364
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw26I GTCTC 4 cut(s) 152, 227, 233, 239
AlwI GGATC 2 cut(s) 253, 405
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 157, 378
Asp700I GAANNNNTTC 2 cut(s) 193, 433
AspS9I GGNCC 2 cut(s) 251, 378
AsuC2I CCSGG 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 2 cut(s) 137, 356
BceAI ACGGC 6 cut(s) 68, 172, 286, 302, 305, 381
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 4 cut(s) 152, 227, 233, 239
Bme1390I CCNGG 2 cut(s) 22, 360
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 251, 378
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 22, 360
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 132, 164
Bpu14I TTCGAA 1 cut(s) 418
BpuMI CCSGG 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 2 cut(s) 172, 253
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 364
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 137, 364
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 2 cut(s) 290, 326
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 159, 380
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 3 cut(s) 21, 173, 254
BslI CCNNNNNNNGG 2 cut(s) 137, 364
BsmAI GTCTC 4 cut(s) 152, 227, 233, 239
BsmBI CGTCTC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 2 cut(s) 159, 380
Bso31I GGTCTC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 418
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 6 cut(s) 75, 132, 258, 296, 397, 409
BspACI CCGC 1 cut(s) 289
BspANI GGCC 2 cut(s) 159, 380
BspCNI CTCAG 1 cut(s) 92
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 2 cut(s) 253, 405
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 6 cut(s) 75, 132, 258, 296, 397, 409
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 2 cut(s) 199, 225
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 6 cut(s) 78, 135, 261, 299, 400, 412
BstMAI GTCTC 4 cut(s) 152, 227, 233, 239
BstMBI GATC 6 cut(s) 75, 132, 258, 296, 397, 409
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 20, 358
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 2 cut(s) 159, 380
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 251, 378
CviJI RGCY 6 cut(s) 83, 159, 347, 368, 380, 415
CviKI_1 RGCY 6 cut(s) 83, 159, 347, 368, 380, 415
DdeI CTNAG 1 cut(s) 79
DpnI GATC 6 cut(s) 77, 134, 260, 298, 399, 411
DpnII GATC 6 cut(s) 75, 132, 258, 296, 397, 409
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 199, 225
EarI CTCTTC 2 cut(s) 199, 225
EciI GGCGGA 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 5 cut(s) 94, 96, 167, 206, 332
FbaI TGATCA 1 cut(s) 409
FokI GGATG 1 cut(s) 188
HaeIII GGCC 2 cut(s) 159, 380
HapII CCGG 3 cut(s) 21, 173, 254
HinfI GANTC 5 cut(s) 29, 35, 53, 169, 189
HpaII CCGG 3 cut(s) 21, 173, 254
Hpy188I TCNGA 3 cut(s) 34, 132, 385
Hpy188III TCNNGA 2 cut(s) 173, 371
Hpy99I CGWCG 3 cut(s) 50, 89, 110
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 79
Kpn2I TCCGGA 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 6 cut(s) 75, 132, 258, 296, 397, 409
LmnI GCTCC 2 cut(s) 24, 373
LpnPI CCDG 7 cut(s) 34, 186, 234, 267, 345, 372, 384
LweI GCATC 1 cut(s) 166
MalI GATC 6 cut(s) 77, 134, 260, 298, 399, 411
MboI GATC 6 cut(s) 75, 132, 258, 296, 397, 409
MflI RGATCY 1 cut(s) 258
MluCI AATT 1 cut(s) 40
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 3 cut(s) 57, 126, 383
MnlI CCTC 7 cut(s) 175, 268, 271, 304, 328, 388, 391
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 2 cut(s) 193, 433
MseI TTAA 1 cut(s) 390
MspI CCGG 3 cut(s) 21, 173, 254
MspR9I CCNGG 2 cut(s) 22, 360
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 1 cut(s) 22
NdeII GATC 6 cut(s) 75, 132, 258, 296, 397, 409
NlaIV GGNNCC 1 cut(s) 369
NspV TTCGAA 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 2 cut(s) 193, 433
PfeI GAWTC 4 cut(s) 29, 53, 169, 189
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 251, 378
PsuI RGATCY 1 cut(s) 258
PvuI CGATCG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 6 cut(s) 75, 132, 258, 296, 397, 409
Sau96I GGNCC 2 cut(s) 251, 378
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 22, 360
SetI ASST 2 cut(s) 186, 417
SfaNI GCATC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 1 cut(s) 251
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 20, 358
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 48, 87, 418
TasI AATT 1 cut(s) 40
TfiI GAWTC 4 cut(s) 29, 53, 169, 189
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 3 cut(s) 34, 251, 257
VpaK11BI GGWCC 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 193, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.