FvH4_3g21494

iron import into the mitochondrion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013020
Physical Location & Seq
Forward (+)
14609913 .. 14613316
3404 bp
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UTR
Exon/CDS
Intron
FvH4_3g21494.t1

Sequence Viewer

Length: 453 bp
ATGTCACTTGAGAAACGTCGTTCGGATATTCATCGTCTTACGAAGTTGAACACCAGCGAATTTAGGGAGAGCTTTGGGAGGTCGATGCGATCTCCCCTCACTTGTTCTCTAGAGAACTTGGGAGATACCAGGCGTATCTCGACTCAGGCCGTCGGCCGCAACAATATGTTTTGCCTTCAAACGCCGCCGCGTCTCCTATCTTGGTCTAGAGGGAGCTGGAGGGAGATCACTATGCCGATTTCGGAAGATGAGATTGAAGAGGGTGCTAATTCGGCGATCAAAGAAGACGAGAGTTGCCGGAACGTGTCGTTGACACCAGAGAAGGCGATGAGGGTTATGGAGGCGATGAGAAGGATTTCGTTTGCTGGAGTGGCTTCAGATTGGGCGGATTGGGTCCCTGAAGAGAACTGGATGGATCAGCTTCACTTGCTCCGACAATCACCCCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.33

Weight (kDa)

6.16

Isoelectric Point (pI)

77.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07020
fragaria_vesca FvH4_3g21494 FvH4_3g39700 FvH4_3g39700
malus_domestica MD03G1055700.v1.1
prunus_persica Prupe.6G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071561
rosa_laevigata RLG00000013433 RLG00000036225
rosa_multiflora Rmu_sc0000031.1_g000030 Rmu_sc0005745.1_g000008
rosa_roxburghii Rroxscaffold_1G00009610
rosa_rugosa Rorug05G0413200
rosa_samantha Rh5AG469100 Rh5BG488300 Rh5DG499100
rosa_wichuraiana Rw5G043590 Rw6G041020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 190
AciI CCGC 4 cut(s) 157, 185, 188, 386
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 360, 420
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 49, 179, 257
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 3 cut(s) 72, 216, 421
AluI AGCT 3 cut(s) 72, 216, 421
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 423
AoxI GGCC 2 cut(s) 147, 154
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 432
AvaII GGWCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 110, 207
BisI GCNGC 3 cut(s) 157, 185, 188
BlsI GCNGC 3 cut(s) 158, 186, 189
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 395, 396
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 2 cut(s) 238, 387
BpuEI CTTGAG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 413
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 417
BseJI GATNNNNATC 1 cut(s) 30
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 413
BseX3I CGGCCG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 2 cut(s) 149, 156
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 2 cut(s) 149, 156
Bsp143I GATC 4 cut(s) 89, 225, 276, 415
BspACI CCGC 4 cut(s) 157, 185, 188, 386
BspANI GGCC 2 cut(s) 149, 156
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 395, 396
BspPI GGATC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 413
BssMI GATC 4 cut(s) 89, 225, 276, 415
Bst2UI CCWGG 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 252, 396
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 4 cut(s) 92, 228, 279, 418
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 89, 225, 276, 415
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 272, 371, 427
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 291
BstZI CGGCCG 1 cut(s) 154
BsuRI GGCC 2 cut(s) 149, 156
BtgZI GCGATG 2 cut(s) 341, 359
BtsCI GGATG 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 1 cut(s) 179
CviJI RGCY 6 cut(s) 72, 149, 156, 216, 374, 421
CviKI_1 RGCY 6 cut(s) 72, 149, 156, 216, 374, 421
DdeI CTNAG 1 cut(s) 144
DpnI GATC 4 cut(s) 91, 227, 278, 417
DpnII GATC 4 cut(s) 89, 225, 276, 415
EaeI YGGCCR 1 cut(s) 154
EagI CGGCCG 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 252, 396
EarI CTCTTC 2 cut(s) 252, 396
EciI GGCGGA 1 cut(s) 401
EclXI CGGCCG 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 394
Eco52I CGGCCG 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 360, 420
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 197
FaiI YATR 3 cut(s) 167, 233, 338
FaqI GGGAC 1 cut(s) 380
Fnu4HI GCNGC 3 cut(s) 157, 185, 188
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 3 cut(s) 157, 185, 188
FspBI CTAG 2 cut(s) 110, 207
GluI GCNGC 3 cut(s) 157, 185, 188
GsuI CTGGAG 2 cut(s) 238, 387
HaeIII GGCC 2 cut(s) 149, 156
HapII CCGG 1 cut(s) 298
HgaI GACGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 298
HphI GGTGA 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 4 cut(s) 25, 244, 379, 434
Hpy188III TCNNGA 3 cut(s) 110, 139, 207
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 2 cut(s) 21, 155
HpyAV CCTTC 3 cut(s) 185, 316, 345
HpyCH4IV ACGT 2 cut(s) 16, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 371, 427
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 2 cut(s) 16, 303
KflI GGGWCCC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 89, 225, 276, 415
LmnI GCTCC 2 cut(s) 213, 435
LweI GCATC 1 cut(s) 75
MaeI CTAG 2 cut(s) 110, 207
MaeII ACGT 2 cut(s) 16, 303
MaeIII GTNAC 1 cut(s) 3
MalI GATC 4 cut(s) 91, 227, 278, 417
MboI GATC 4 cut(s) 89, 225, 276, 415
MboII GAAGA 4 cut(s) 257, 269, 296, 413
MluCI AATT 2 cut(s) 59, 268
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 7 cut(s) 72, 107, 203, 213, 253, 324, 334
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 1 cut(s) 451
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 272, 371, 427
NdeII GATC 4 cut(s) 89, 225, 276, 415
NlaIV GGNNCC 2 cut(s) 395, 396
NmuCI GTSAC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 355
PkrI GCNGC 3 cut(s) 158, 186, 189
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 395, 396
PspPI GGNCC 1 cut(s) 394
PspPPI RGGWCCY 1 cut(s) 394
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 3 cut(s) 157, 185, 188
Sau3AI GATC 4 cut(s) 89, 225, 276, 415
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 130
SetI ASST 6 cut(s) 19, 74, 83, 218, 306, 423
SfaNI GCATC 1 cut(s) 75
SinI GGWCC 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 59, 268
SsiI CCGC 4 cut(s) 157, 185, 188, 386
SspMI CTAG 2 cut(s) 110, 207
StyD4I CCNGG 1 cut(s) 128
TaiI ACGT 2 cut(s) 19, 306
TaqI TCGA 2 cut(s) 83, 140
TasI AATT 2 cut(s) 59, 268
TauI GCSGC 3 cut(s) 159, 187, 190
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 59
XbaI TCTAGA 2 cut(s) 109, 206
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 2 cut(s) 110, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.