FvH4_3g39700

iron import into the mitochondrion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013020
Physical Location & Seq
Forward (+)
33678691 .. 33679875
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39700.t1

Sequence Viewer

Length: 513 bp
ATGAACGCTATCTCTCCTAACGATTTCATGGAAGCTCTAGAAAACCACAGCGGAAGCGACTCCGACACCAACATCGACGACGACGATGCCGCCGAGTACTACCAGCCAGTCTCCGCCGTCGATTCCGACGACGAGGATCAGCATCTCGCAAACGACGCTGTTGTTTCTCACTCGCAGCTCCTCCCCAACGGTTTGATTCTGAACCAGGCGCAGATGGGAGTGTCGTCGATCAGATTAAACGACGGCGTTGAGGGTGAGAATGGCGGTAGCAGCAGCAGCCAAGTGGAGGAGGAAGATGAGATTGGAGAGGGTGCTGATTCGGCGATCAGGAGCGCGATCAGAGAAGACGAGAGTCGCCGGAACGCGCCCTTGACGCCGGAGAATGCGACGAGGGTTATGGAGGCGATGAGGGGGATTTCGTTTGCTGGAGTGGCTCCGGATTGGGCGGATCGGATCCCTGAAGAGAACTGGATGGATCGCCTTCGCCGGCTCCGGCAGTCACCCCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.56

Weight (kDa)

4.09

Isoelectric Point (pI)

59.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MEA1 PF06910 32 - 163 1.3e-07 Male enhanced antigen 1 (MEA1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07020
fragaria_vesca FvH4_3g21494 FvH4_3g39700 FvH4_3g39700
malus_domestica MD03G1055700.v1.1
prunus_persica Prupe.6G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071561
rosa_laevigata RLG00000013433 RLG00000036225
rosa_multiflora Rmu_sc0000031.1_g000030 Rmu_sc0005745.1_g000008
rosa_roxburghii Rroxscaffold_1G00009610
rosa_rugosa Rorug05G0413200
rosa_samantha Rh5AG469100 Rh5BG488300 Rh5DG499100
rosa_wichuraiana Rw5G043590 Rw6G041020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 335, 365
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 5 cut(s) 51, 90, 114, 264, 446
AclWI GGATC 5 cut(s) 144, 448, 456, 461, 483
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 286
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 35, 178
AluI AGCT 2 cut(s) 35, 178
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 5 cut(s) 144, 448, 456, 461, 483
Aor13HI TCCGGA 1 cut(s) 436
ApeKI GCWGC 4 cut(s) 175, 270, 273, 276
AspLEI GCGC 3 cut(s) 211, 335, 367
AsuHPI GGTGA 2 cut(s) 266, 492
BamHI GGATCC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 187, 282, 285, 288
BccI CCATC 2 cut(s) 208, 466
BceAI ACGGC 2 cut(s) 101, 259
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 38
BisI GCNGC 5 cut(s) 90, 176, 271, 274, 277
BlsI GCNGC 5 cut(s) 91, 177, 272, 275, 278
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 3 cut(s) 435, 455, 491
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 76, 151
BoxI GACNNNNGTC 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 486
Bse1I ACTGG 2 cut(s) 107, 473
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 477
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 286
BseNI ACTGG 2 cut(s) 107, 473
BseRI GAGGAG 2 cut(s) 170, 302
BseXI GCAGC 4 cut(s) 187, 282, 285, 288
Bsh1236I CGCG 2 cut(s) 335, 365
BsiSI CCGG 5 cut(s) 358, 377, 437, 487, 493
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 388
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
BspACI CCGC 5 cut(s) 51, 90, 114, 264, 446
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 2 cut(s) 335, 365
BspLI GGNNCC 3 cut(s) 435, 455, 491
BspPI GGATC 5 cut(s) 144, 448, 456, 461, 483
BsrFI RCCGGY 1 cut(s) 486
BsrI ACTGG 2 cut(s) 107, 473
BssAI RCCGGY 1 cut(s) 486
BssMI GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
BssNI GRCGYC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 488
BstF5I GGATG 1 cut(s) 477
BstFNI CGCG 2 cut(s) 335, 365
BstHHI GCGC 3 cut(s) 211, 335, 367
BstKTI GATC 7 cut(s) 139, 231, 327, 339, 451, 456, 478
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
BstMWI GCNNNNNNNGC 6 cut(s) 155, 270, 276, 320, 373, 431
BstNI CCWGG 1 cut(s) 206
BstPAI GACNNNNGTC 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 2 cut(s) 335, 365
BstV1I GCAGC 4 cut(s) 187, 282, 285, 288
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 488
CfoI GCGC 3 cut(s) 211, 335, 367
Cfr10I RCCGGY 1 cut(s) 486
CseI GACGC 2 cut(s) 164, 382
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 35, 106, 178, 279, 434, 490
CviKI_1 RGCY 6 cut(s) 35, 106, 178, 279, 434, 490
CviQI GTAC 1 cut(s) 97
DpnI GATC 7 cut(s) 138, 230, 326, 338, 450, 455, 477
DpnII GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
EciI GGCGGA 2 cut(s) 103, 461
Eco57I CTGAAG 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 398
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 90, 176, 271, 274, 277
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 5 cut(s) 90, 176, 271, 274, 277
FspBI CTAG 1 cut(s) 38
GlaI GCGC 3 cut(s) 210, 334, 366
GluI GCNGC 5 cut(s) 90, 176, 271, 274, 277
GsuI CTGGAG 1 cut(s) 447
HapII CCGG 5 cut(s) 358, 377, 437, 487, 493
HgaI GACGC 2 cut(s) 164, 382
HhaI GCGC 3 cut(s) 211, 335, 367
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 3 cut(s) 209, 333, 365
HinP1I GCGC 3 cut(s) 209, 333, 365
HinfI GANTC 5 cut(s) 59, 122, 196, 317, 352
HpaII CCGG 5 cut(s) 358, 377, 437, 487, 493
HphI GGTGA 2 cut(s) 266, 492
Hpy188I TCNGA 6 cut(s) 64, 127, 201, 233, 341, 453
Hpy188III TCNNGA 3 cut(s) 38, 328, 437
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 270, 276, 320, 373, 431
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 3 cut(s) 209, 333, 365
Kpn2I TCCGGA 1 cut(s) 436
KroI GCCGGC 1 cut(s) 486
KroNI GCCGGC 1 cut(s) 488
Kzo9I GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
LmnI GCTCC 4 cut(s) 183, 330, 439, 495
Lsp1109I GCAGC 4 cut(s) 187, 282, 285, 288
LweI GCATC 2 cut(s) 76, 151
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 498
MalI GATC 7 cut(s) 138, 230, 326, 338, 450, 455, 477
MboI GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
MboII GAAGA 3 cut(s) 305, 356, 473
MflI RGATCY 1 cut(s) 453
MlyI GAGTC 2 cut(s) 53, 361
MmeI TCCRAC 2 cut(s) 87, 150
MnlI CCTC 9 cut(s) 127, 191, 244, 280, 283, 301, 384, 394, 402
MroI TCCGGA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 486
MseI TTAA 2 cut(s) 236, 511
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 5 cut(s) 358, 377, 437, 487, 493
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 335, 365
MwoI GCNNNNNNNGC 6 cut(s) 155, 270, 276, 320, 373, 431
NaeI GCCGGC 1 cut(s) 488
NdeII GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
NgoMIV GCCGGC 1 cut(s) 486
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 435, 455, 491
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 90, 126
PctI GAATGC 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 488
PfeI GAWTC 3 cut(s) 122, 196, 317
PkrI GCNGC 5 cut(s) 91, 177, 272, 275, 278
PleI GAGTC 2 cut(s) 53, 360
PpsI GAGTC 2 cut(s) 53, 360
PshAI GACNNNNGTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 435, 455, 491
PsuI RGATCY 1 cut(s) 453
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 236, 511
SatI GCNGC 5 cut(s) 90, 176, 271, 274, 277
Sau3AI GATC 7 cut(s) 136, 228, 324, 336, 448, 453, 475
ScaI AGTACT 1 cut(s) 98
SchI GAGTC 2 cut(s) 53, 361
ScrFI CCNGG 1 cut(s) 206
SetI ASST 2 cut(s) 37, 180
SfaNI GCATC 2 cut(s) 76, 151
SsiI CCGC 5 cut(s) 51, 90, 114, 264, 446
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 3 cut(s) 75, 120, 227
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 3 cut(s) 122, 196, 317
Tru1I TTAA 2 cut(s) 236, 511
Tru9I TTAA 2 cut(s) 236, 511
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 4 cut(s) 175, 270, 273, 276
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 2 cut(s) 16, 17
XbaI TCTAGA 1 cut(s) 37
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.