RLG00000013433

iron import into the mitochondrion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013020
Physical Location & Seq
Reverse (-)
31471812 .. 31475698
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013433

Sequence Viewer

Length: 696 bp
ATGGGAGAAGAGTTGAAGAAGAAAGTATCAAGAAGGATGAAAGACCAATGTGGTCTTTATAGAAGAGGATGTGGAAGAGCATTCAGAGGGGCAAGAGCGGTGGCGAAAGAAGCAATCCCTATCCCTAAACCCAATTTAGAAGCAGCGGAGGACGACGGCGGCGAACCCTTAGCTGTAGAAACCCATAGCGGAAGCGATTCGGACACTAACATCGACAACGACAATGCCGCCGAGTACTACCATCTCCAAAAAGATGCCACAGAGGAGAATCGCCGTCTCCAAAACGACACCTTTGTGCAGAGGGGAGTGTCGTCGCTCAGATTAAACGATGACGTTGAGGGTGATAATGGCAGCAGTAGTGAAGAAGAAGAAGAAGAGATAGGAGGGGGTTCTGATTCAGAGATCGCGAGGGCAATCAGAGAAGACGAGAGTCGCTGGCACACGCTGTTGAGGCCGGAGAATGTGACGATGGTTATGGAGGTGATGAGAGGGATTTCGTTTGATGGAGTGACACCGGATTGGGCGGATTGGATCCCTGAAGAGAACTGGATCGATCGGCTTAGCCGGCTCTGGCAGGCACCCCAGAATGAAGACATTCATCTTCTGGAGCACAAAGTGGGAAGAGATGTTGGGGATGCAAGGGAGAGTGAGGATGTAGTGGATCTGGAGACGGAGGAGGATATGAGCTCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.05

Weight (kDa)

4.46

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07020
fragaria_vesca FvH4_3g21494 FvH4_3g39700 FvH4_3g39700
malus_domestica MD03G1055700.v1.1
prunus_persica Prupe.6G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071561
rosa_laevigata RLG00000013433 RLG00000036225
rosa_multiflora Rmu_sc0000031.1_g000030 Rmu_sc0005745.1_g000008
rosa_roxburghii Rroxscaffold_1G00009610
rosa_rugosa Rorug05G0413200
rosa_samantha Rh5AG469100 Rh5BG488300 Rh5DG499100
rosa_wichuraiana Rw5G043590 Rw6G041020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AccBSI CCGCTC 1 cut(s) 98
AccII CGCG 1 cut(s) 407
AciI CCGC 6 cut(s) 98, 146, 159, 189, 228, 524
AclWI GGATC 4 cut(s) 526, 539, 557, 669
AcuI CTGAAG 1 cut(s) 558
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 16
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 2 cut(s) 173, 687
AluI AGCT 2 cut(s) 173, 687
Alw21I GWGCWC 2 cut(s) 612, 689
Alw26I GTCTC 2 cut(s) 281, 662
AlwI GGATC 4 cut(s) 526, 539, 557, 669
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 143, 351
Asp700I GAANNNNTTC 2 cut(s) 196, 594
AsuHPI GGTGA 2 cut(s) 353, 493
BamHI GGATCC 1 cut(s) 531
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 689
BbsI GAAGAC 2 cut(s) 429, 597
Bbv12I GWGCWC 2 cut(s) 612, 689
BbvI GCAGC 2 cut(s) 155, 363
BccI CCATC 3 cut(s) 249, 463, 497
BceAI ACGGC 2 cut(s) 172, 258
BcoDI GTCTC 2 cut(s) 281, 662
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 4 cut(s) 144, 160, 228, 352
BlpI GCTNAGC 1 cut(s) 560
BlsI GCNGC 4 cut(s) 145, 161, 229, 353
BmcAI AGTACT 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 533, 579
BmsI GCATC 2 cut(s) 244, 625
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 429, 597
BpmI CTGGAG 2 cut(s) 626, 686
Bpu10I CCTNAGC 1 cut(s) 169
Bpu1102I GCTNAGC 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 514
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 1 cut(s) 551
BseCI ATCGAT 1 cut(s) 552
BseGI GGATG 4 cut(s) 42, 74, 640, 658
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 2 cut(s) 278, 689
BseXI GCAGC 2 cut(s) 155, 363
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 577
BshVI ATCGAT 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 556
BsiHKAI GWGCWC 2 cut(s) 612, 689
BsiSI CCGG 3 cut(s) 455, 515, 565
BsmAI GTCTC 2 cut(s) 281, 662
BsmBI CGTCTC 2 cut(s) 281, 662
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 612, 689
Bsp143I GATC 5 cut(s) 402, 531, 549, 553, 661
Bsp1720I GCTNAGC 1 cut(s) 560
Bsp68I TCGCGA 1 cut(s) 407
BspACI CCGC 6 cut(s) 98, 146, 159, 189, 228, 524
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 552
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 533, 579
BspPI GGATC 4 cut(s) 526, 539, 557, 669
BspQI GCTCTTC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 564
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 1 cut(s) 564
BssMI GATC 5 cut(s) 402, 531, 549, 553, 661
Bst6I CTCTTC 6 cut(s) 3, 58, 70, 369, 534, 616
BstC8I GCNNGC 3 cut(s) 437, 566, 576
BstDEI CTNAG 3 cut(s) 169, 317, 560
BstF5I GGATG 4 cut(s) 42, 74, 640, 658
BstFNI CGCG 1 cut(s) 407
BstKTI GATC 5 cut(s) 405, 534, 552, 556, 664
BstMAI GTCTC 2 cut(s) 281, 662
BstMBI GATC 5 cut(s) 402, 531, 549, 553, 661
BstMCI CGRYCG 1 cut(s) 556
BstMWI GCNNNNNNNGC 3 cut(s) 110, 451, 565
BstPAI GACNNNNGTC 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 174
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 155, 363
BstV2I GAAGAC 2 cut(s) 429, 597
BstX2I RGATCY 2 cut(s) 531, 661
BstYI RGATCY 2 cut(s) 531, 661
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 1 cut(s) 454
BsuTUI ATCGAT 1 cut(s) 552
BtsCI GGATG 4 cut(s) 42, 74, 640, 658
BtuMI TCGCGA 1 cut(s) 407
Cac8I GCNNGC 3 cut(s) 437, 566, 576
Cfr10I RCCGGY 1 cut(s) 564
ClaI ATCGAT 1 cut(s) 552
Csp6I GTAC 1 cut(s) 235
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 1 cut(s) 693
CviJI RGCY 6 cut(s) 173, 454, 559, 564, 568, 687
CviKI_1 RGCY 6 cut(s) 173, 454, 559, 564, 568, 687
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 169, 317, 560
DpnI GATC 5 cut(s) 404, 533, 551, 555, 663
DpnII GATC 5 cut(s) 402, 531, 549, 553, 661
DraIII CACNNNGTG 1 cut(s) 616
Eam1104I CTCTTC 6 cut(s) 3, 58, 70, 369, 534, 616
EarI CTCTTC 6 cut(s) 3, 58, 70, 369, 534, 616
EciI GGCGGA 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 689
Eco53kI GAGCTC 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 689
Esp3I CGTCTC 2 cut(s) 281, 662
FaeI CATG 1 cut(s) 696
FaiI YATR 5 cut(s) 60, 186, 476, 683, 694
FatI CATG 1 cut(s) 692
Fnu4HI GCNGC 4 cut(s) 144, 160, 228, 352
FokI GGATG 4 cut(s) 49, 81, 647, 665
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 4 cut(s) 144, 160, 228, 352
GluI GCNGC 4 cut(s) 144, 160, 228, 352
GsuI CTGGAG 2 cut(s) 626, 686
HaeIII GGCC 1 cut(s) 454
HapII CCGG 3 cut(s) 455, 515, 565
Hin1II CATG 1 cut(s) 696
HinfI GANTC 4 cut(s) 197, 268, 395, 430
HpaII CCGG 3 cut(s) 455, 515, 565
HphI GGTGA 2 cut(s) 353, 493
Hpy188I TCNGA 6 cut(s) 86, 202, 320, 394, 400, 419
Hpy188III TCNNGA 4 cut(s) 30, 406, 605, 665
Hpy99I CGWCG 2 cut(s) 158, 316
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 298, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 451, 565
HpyF3I CTNAG 3 cut(s) 169, 317, 560
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 1 cut(s) 696
KroI GCCGGC 1 cut(s) 564
KroNI GCCGGC 1 cut(s) 566
Kzo9I GATC 5 cut(s) 402, 531, 549, 553, 661
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 607, 692
Lsp1109I GCAGC 2 cut(s) 155, 363
LweI GCATC 2 cut(s) 244, 625
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 463, 508
MalI GATC 5 cut(s) 404, 533, 551, 555, 663
MbiI CCGCTC 1 cut(s) 98
MboI GATC 5 cut(s) 402, 531, 549, 553, 661
MflI RGATCY 2 cut(s) 531, 661
MhlI GDGCHC 2 cut(s) 612, 689
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 439
MroNI GCCGGC 1 cut(s) 564
MroXI GAANNNNTTC 2 cut(s) 196, 594
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 3 cut(s) 455, 515, 565
Mva1269I GAATGC 1 cut(s) 80
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 110, 451, 565
NaeI GCCGGC 1 cut(s) 566
NdeII GATC 5 cut(s) 402, 531, 549, 553, 661
NgoMIV GCCGGC 1 cut(s) 564
NlaIII CATG 1 cut(s) 696
NlaIV GGNNCC 2 cut(s) 533, 579
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 463, 508
NruI TCGCGA 1 cut(s) 407
OliI CACNNNNGTG 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 566
PdmI GAANNNNTTC 2 cut(s) 196, 594
PfeI GAWTC 3 cut(s) 197, 268, 395
PkrI GCNGC 4 cut(s) 145, 161, 229, 353
Ple19I CGATCG 1 cut(s) 556
PleI GAGTC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 438
PshAI GACNNNNGTC 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 689
PspN4I GGNNCC 2 cut(s) 533, 579
PsuI RGATCY 2 cut(s) 531, 661
PvuI CGATCG 1 cut(s) 556
RruI TCGCGA 1 cut(s) 407
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 4 cut(s) 144, 160, 228, 352
Sau3AI GATC 5 cut(s) 402, 531, 549, 553, 661
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 439
SduI GDGCHC 2 cut(s) 612, 689
SetI ASST 5 cut(s) 175, 293, 336, 483, 689
SfaNI GCATC 2 cut(s) 244, 625
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 1 cut(s) 133
SsiI CCGC 6 cut(s) 98, 146, 159, 189, 228, 524
SstI GAGCTC 1 cut(s) 689
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 213, 552
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 234
TauI GCSGC 2 cut(s) 162, 230
TfiI GAWTC 3 cut(s) 197, 268, 395
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseFI GTSAC 2 cut(s) 463, 508
TseI GCWGC 2 cut(s) 143, 351
Tsp45I GTSAC 2 cut(s) 463, 508
TspDTI ATGAA 3 cut(s) 53, 587, 603
TspGWI ACGGA 1 cut(s) 686
XmnI GAANNNNTTC 2 cut(s) 196, 594
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.