Rw6G041020

iron import into the mitochondrion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013020
Physical Location & Seq
Reverse (-)
64724463 .. 64726905
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041020.1

Sequence Viewer

Length: 447 bp
ATGTTAAATTTTGTTGGGCTCACTGATTGTGGGGCGATAAGCCCAGCTGTAGAAACCCACAATGGAAGCGATTCAAACACCAACATCGACGACAACGATGCCGCCGAATACTACCGTCTCCAAAACGATGCCACAGAGGAGAATCACCATCTCCAAAACGGCGCCGTTGTGAACCAGGCGCAGAGGGGAGTGTCGTCGCTCAGATTAAACGACGACGTCGATGATAATGGCAGCAGCAGACCAGGAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCGGAGGGGTCGCCGGCACGAGCTGTTGACGCCGGAGAATGCGACGATGGTTATGGAGGTGATGAGAGGGATTTCGATTGATGGAGTGGCACTAGATTGGGCAGATCGGATCCCTGAAGAGAACTGGATACATCGGCTTCACTGGCTTTGGCAGGCACCCCAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

6.29

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07020
fragaria_vesca FvH4_3g21494 FvH4_3g39700 FvH4_3g39700
malus_domestica MD03G1055700.v1.1
prunus_persica Prupe.6G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071561
rosa_laevigata RLG00000013433 RLG00000036225
rosa_multiflora Rmu_sc0000031.1_g000030 Rmu_sc0005745.1_g000008
rosa_roxburghii Rroxscaffold_1G00009610
rosa_rugosa Rorug05G0413200
rosa_samantha Rh5AG469100 Rh5BG488300 Rh5DG499100
rosa_wichuraiana Rw5G043590 Rw6G041020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccB1I GGYRCC 2 cut(s) 161, 433
AciI CCGC 1 cut(s) 102
AclWI GGATC 2 cut(s) 382, 395
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 3 cut(s) 162, 216, 308
AgsI TTSAA 1 cut(s) 75
AjnI CCWGG 2 cut(s) 174, 241
AluBI AGCT 2 cut(s) 47, 301
AluI AGCT 2 cut(s) 47, 301
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 2 cut(s) 382, 395
ApeKI GCWGC 2 cut(s) 231, 234
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 2 cut(s) 164, 181
AsuHPI GGTGA 2 cut(s) 137, 349
BamHI GGATCC 1 cut(s) 387
BanI GGYRCC 2 cut(s) 161, 433
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 296
BbvI GCAGC 2 cut(s) 243, 246
BccI CCATC 3 cut(s) 156, 319, 353
BceAI ACGGC 2 cut(s) 149, 175
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 176, 243
BciVI GTATCC 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 165
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 3 cut(s) 102, 232, 235
BlsI GCNGC 3 cut(s) 103, 233, 236
Bme1390I CCNGG 2 cut(s) 176, 243
BmiI GGNNCC 3 cut(s) 163, 389, 435
BmrFI CCNGG 2 cut(s) 176, 243
BmsI GCATC 2 cut(s) 88, 118
BsaHI GRCGYC 3 cut(s) 162, 216, 308
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 407, 425
BseBI CCWGG 2 cut(s) 176, 243
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 407, 425
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 243, 246
BseYI CCCAGC 1 cut(s) 43
BshNI GGYRCC 2 cut(s) 161, 433
BsiSI CCGG 2 cut(s) 292, 311
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 382, 387
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 163, 389, 435
BspPI GGATC 2 cut(s) 382, 395
BspT107I GGYRCC 2 cut(s) 161, 433
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 2 cut(s) 407, 425
BssAI RCCGGY 1 cut(s) 291
BssMI GATC 2 cut(s) 382, 387
BssNI GRCGYC 3 cut(s) 162, 216, 308
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 176, 243
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 3 cut(s) 162, 216, 308
BstC8I GCNNGC 2 cut(s) 293, 432
BstDEI CTNAG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 164, 181
BstKTI GATC 2 cut(s) 385, 390
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 382, 387
BstMWI GCNNNNNNNGC 2 cut(s) 307, 421
BstNI CCWGG 2 cut(s) 176, 243
BstSCI CCNGG 2 cut(s) 174, 241
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 243, 246
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuI GTATCC 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 21, 418
Cac8I GCNNGC 2 cut(s) 293, 432
CfoI GCGC 2 cut(s) 164, 181
Cfr10I RCCGGY 1 cut(s) 291
CseI GACGC 1 cut(s) 316
CviJI RGCY 6 cut(s) 19, 42, 47, 301, 415, 424
CviKI_1 RGCY 6 cut(s) 19, 42, 47, 301, 415, 424
DdeI CTNAG 1 cut(s) 200
DinI GGCGCC 1 cut(s) 163
DpnI GATC 2 cut(s) 384, 389
DpnII GATC 2 cut(s) 382, 387
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 174, 241
EcoT38I GRGCYC 1 cut(s) 21
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 122
FaiI YATR 1 cut(s) 332
Fnu4HI GCNGC 3 cut(s) 102, 232, 235
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 102, 232, 235
FspBI CTAG 1 cut(s) 371
GlaI GCGC 2 cut(s) 163, 180
GluI GCNGC 3 cut(s) 102, 232, 235
GsaI CCCAGC 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 165
HapII CCGG 2 cut(s) 292, 311
HgaI GACGC 1 cut(s) 316
HhaI GCGC 2 cut(s) 164, 181
Hin1I GRCGYC 3 cut(s) 162, 216, 308
Hin6I GCGC 2 cut(s) 162, 179
HinP1I GCGC 2 cut(s) 162, 179
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 3 cut(s) 71, 142, 277
HpaII CCGG 2 cut(s) 292, 311
HphI GGTGA 2 cut(s) 137, 349
Hpy166II GTNNAC 2 cut(s) 172, 306
Hpy188I TCNGA 3 cut(s) 203, 282, 387
Hpy8I GTNNAC 2 cut(s) 172, 306
Hpy99I CGWCG 6 cut(s) 92, 199, 215, 218, 221, 325
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 421
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 3 cut(s) 162, 216, 308
HspAI GCGC 2 cut(s) 162, 179
KasI GGCGCC 1 cut(s) 161
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
Kzo9I GATC 2 cut(s) 382, 387
Lsp1109I GCAGC 2 cut(s) 243, 246
LweI GCATC 2 cut(s) 88, 118
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 216
MalI GATC 2 cut(s) 384, 389
MboI GATC 2 cut(s) 382, 387
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 7
Mly113I GGCGCC 1 cut(s) 162
MnlI CCTC 5 cut(s) 130, 177, 276, 328, 338
MroNI GCCGGC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 3 cut(s) 5, 206, 445
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 292, 311
MspR9I CCNGG 2 cut(s) 176, 243
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 176, 243
MwoI GCNNNNNNNGC 2 cut(s) 307, 421
NaeI GCCGGC 1 cut(s) 293
NarI GGCGCC 1 cut(s) 162
NdeII GATC 2 cut(s) 382, 387
NgoMIV GCCGGC 1 cut(s) 291
NlaIV GGNNCC 3 cut(s) 163, 389, 435
PcsI WCGNNNNNNNCGW 3 cut(s) 93, 102, 216
PctI GAATGC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 71, 142, 277
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 3 cut(s) 103, 233, 236
PluTI GGCGCC 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 174, 241
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 174, 241
PspN4I GGNNCC 3 cut(s) 163, 389, 435
PsuI RGATCY 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 5, 206, 445
SatI GCNGC 3 cut(s) 102, 232, 235
Sau3AI GATC 2 cut(s) 382, 387
ScrFI CCNGG 2 cut(s) 176, 243
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 49, 219, 303, 339
SfaNI GCATC 2 cut(s) 88, 118
SfcI CTRYAG 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 163
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 102
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 174, 241
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 219
TaqI TCGA 3 cut(s) 87, 219, 353
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 3 cut(s) 71, 142, 277
Tru1I TTAA 3 cut(s) 5, 206, 445
Tru9I TTAA 3 cut(s) 5, 206, 445
TscAI CASTG 2 cut(s) 28, 425
TseI GCWGC 2 cut(s) 231, 234
TspRI CASTG 2 cut(s) 28, 425
Tth111I GACNNNGTC 1 cut(s) 215
XapI RAATTY 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 1 cut(s) 371
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.