Prupe.6G049000_v2.0.a1

iron import into the mitochondrion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013020
Physical Location & Seq
Reverse (-)
3495412 .. 3496448
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G049000.1

Sequence Viewer

Length: 543 bp
ATGAACGCTACCGCTCCAGCTGATCCTGATTTCATCGAAGTTACGGACTACCTCAACGGAAGCGATTCGGACACAAACATCGATGAGGACGAAGTGGCCGGCGAGTACTACCAGCCAGTCTCCGCTGTCGATTCCGAAGATGAAGATCAGAGCAGAAACGATACCGTCTCGATCCACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCTCTCCAACGGCGTGACTATGAATCAGGTACAGAGAGGGATTTCGTCTCTCCGCCTAAACGACAACGTCGAGGGTACTAATAATCATAACATGAGCATGAGCAGCGAAGACGAAGAAGACGAAGAGGAGGAGGAGGCTTCTGATTCGGCGATAATGAGGGCGTTCAGAGAAGACGAGAATCGCAGAAATGCGCCGTTGCCGCCGGAGAACGCGACGAGGGTTAGGGAGGCGATGCGGGGAATTTCCTTCGCCGGAACTCCTCCCCCTTGGGCTGATCGGGTCCCCGAGGGCAACTTGATAGACCGCATTCACCAACTCCGGCGCCCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.23

Weight (kDa)

4.17

Isoelectric Point (pI)

67.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07020
fragaria_vesca FvH4_3g21494 FvH4_3g39700 FvH4_3g39700
malus_domestica MD03G1055700.v1.1
prunus_persica Prupe.6G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071561
rosa_laevigata RLG00000013433 RLG00000036225
rosa_multiflora Rmu_sc0000031.1_g000030 Rmu_sc0005745.1_g000008
rosa_roxburghii Rroxscaffold_1G00009610
rosa_rugosa Rorug05G0413200
rosa_samantha Rh5AG469100 Rh5BG488300 Rh5DG499100
rosa_wichuraiana Rw5G043590 Rw6G041020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 531
AccBSI CCGCTC 1 cut(s) 14
AccII CGCG 1 cut(s) 422
AciI CCGC 7 cut(s) 12, 123, 179, 262, 410, 445, 514
AclWI GGATC 2 cut(s) 17, 166
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 532
AfaI GTAC 3 cut(s) 107, 240, 286
AfiI CCNNNNNNNGG 1 cut(s) 535
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 3 cut(s) 124, 172, 261
AlwI GGATC 2 cut(s) 17, 166
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 9 cut(s) 181, 184, 187, 190, 193, 196, 199, 202, 312
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 64
AspLEI GCGC 2 cut(s) 403, 534
AspS9I GGNCC 1 cut(s) 490
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 531
BbsI GAAGAC 3 cut(s) 324, 333, 387
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 9 cut(s) 193, 196, 199, 202, 205, 208, 211, 214, 324
BceAI ACGGC 2 cut(s) 235, 388
BcnI CCSGG 1 cut(s) 536
BcoDI GTCTC 3 cut(s) 124, 172, 261
BfoI RGCGCY 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 3 cut(s) 491, 492, 533
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 3 cut(s) 324, 333, 387
BpuMI CCSGG 1 cut(s) 536
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 532
BsaJI CCNNGG 2 cut(s) 476, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 476, 495
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 535
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 4 cut(s) 350, 353, 356, 459
BseXI GCAGC 9 cut(s) 193, 196, 199, 202, 205, 208, 211, 214, 324
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 531
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 5 cut(s) 99, 413, 462, 529, 536
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 3 cut(s) 124, 172, 261
BsmBI CGTCTC 2 cut(s) 172, 261
BsmFI GGGAC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 22, 145, 171, 484
BspACI CCGC 7 cut(s) 12, 123, 179, 262, 410, 445, 514
BspANI GGCC 1 cut(s) 98
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 3 cut(s) 491, 492, 533
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 2 cut(s) 17, 166
BspT107I GGYRCC 1 cut(s) 531
BsrBI CCGCTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 476, 495
BssMI GATC 4 cut(s) 22, 145, 171, 484
BssNI GRCGYC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 532
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 100
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 2 cut(s) 403, 534
BstKTI GATC 4 cut(s) 25, 148, 174, 487
BstMAI GTCTC 3 cut(s) 124, 172, 261
BstMBI GATC 4 cut(s) 22, 145, 171, 484
BstMWI GCNNNNNNNGC 9 cut(s) 187, 190, 193, 196, 199, 202, 208, 312, 409
BstSCI CCNGG 1 cut(s) 534
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 9 cut(s) 193, 196, 199, 202, 205, 208, 211, 214, 324
BstV2I GAAGAC 3 cut(s) 324, 333, 387
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 455
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 403, 534
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 490
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 3 cut(s) 106, 239, 285
CviAII CATG 2 cut(s) 301, 307
CviJI RGCY 5 cut(s) 20, 98, 115, 347, 482
CviKI_1 RGCY 5 cut(s) 20, 98, 115, 347, 482
CviQI GTAC 3 cut(s) 106, 239, 285
DinI GGCGCC 1 cut(s) 533
DpnI GATC 4 cut(s) 24, 147, 173, 486
DpnII GATC 4 cut(s) 22, 145, 171, 484
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 476
EgeI GGCGCC 1 cut(s) 533
EheI GGCGCC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 476
Esp3I CGTCTC 2 cut(s) 172, 261
FaeI CATG 2 cut(s) 304, 310
FaiI YATR 4 cut(s) 230, 297, 302, 308
FaqI GGGAC 1 cut(s) 476
FatI CATG 2 cut(s) 300, 306
FauI CCCGC 2 cut(s) 186, 438
GlaI GCGC 2 cut(s) 402, 533
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 1 cut(s) 98
HapII CCGG 5 cut(s) 99, 413, 462, 529, 536
HhaI GCGC 2 cut(s) 403, 534
Hin1I GRCGYC 1 cut(s) 532
Hin1II CATG 2 cut(s) 304, 310
Hin6I GCGC 2 cut(s) 401, 532
HinP1I GCGC 2 cut(s) 401, 532
HinfI GANTC 5 cut(s) 65, 131, 232, 353, 388
HpaII CCGG 5 cut(s) 99, 413, 462, 529, 536
HphI GGTGA 1 cut(s) 512
Hpy188I TCNGA 5 cut(s) 70, 136, 150, 352, 377
Hpy188III TCNNGA 2 cut(s) 26, 169
Hpy99I CGWCG 2 cut(s) 281, 427
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 9 cut(s) 187, 190, 193, 196, 199, 202, 208, 312, 409
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 532
Hsp92II CATG 2 cut(s) 304, 310
HspAI GCGC 2 cut(s) 401, 532
KasI GGCGCC 1 cut(s) 531
KflI GGGWCCC 1 cut(s) 490
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 22, 145, 171, 484
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 9 cut(s) 30, 39, 112, 125, 129, 191, 221, 426, 475
Lsp1109I GCAGC 9 cut(s) 193, 196, 199, 202, 205, 208, 211, 214, 324
LweI GCATC 1 cut(s) 432
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 40, 223
MalI GATC 4 cut(s) 24, 147, 173, 486
MbiI CCGCTC 1 cut(s) 14
MboI GATC 4 cut(s) 22, 145, 171, 484
MboII GAAGA 7 cut(s) 149, 155, 329, 335, 338, 344, 392
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 450
Mly113I GGCGCC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 20, 125
MspI CCGG 5 cut(s) 99, 413, 462, 529, 536
MspR9I CCNGG 1 cut(s) 536
Mva1269I GAATGC 1 cut(s) 516
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 9 cut(s) 187, 190, 193, 196, 199, 202, 208, 312, 409
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 532
NciI CCSGG 1 cut(s) 536
NdeII GATC 4 cut(s) 22, 145, 171, 484
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 304, 310
NlaIV GGNNCC 3 cut(s) 491, 492, 533
NmuCI GTSAC 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 276, 327
PctI GAATGC 1 cut(s) 516
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 5 cut(s) 65, 131, 232, 353, 388
PflFI GACNNNGTC 1 cut(s) 275
PluTI GGCGCC 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 490
Psp5II RGGWCCY 1 cut(s) 490
PspN4I GGNNCC 3 cut(s) 491, 492, 533
PspPI GGNCC 1 cut(s) 490
PspPPI RGGWCCY 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 3 cut(s) 107, 240, 286
RsaNI GTAC 3 cut(s) 106, 239, 285
RseI CAYNNNNRTG 1 cut(s) 305
Sau3AI GATC 4 cut(s) 22, 145, 171, 484
Sau96I GGNCC 1 cut(s) 490
ScaI AGTACT 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 22, 54, 210, 240, 279
SfaNI GCATC 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 533
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 1 cut(s) 450
SsiI CCGC 7 cut(s) 12, 123, 179, 262, 410, 445, 514
SspDI GGCGCC 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 279
TaqI TCGA 5 cut(s) 36, 81, 129, 170, 279
TasI AATT 1 cut(s) 450
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 5 cut(s) 65, 131, 232, 353, 388
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 9 cut(s) 181, 184, 187, 190, 193, 196, 199, 202, 312
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 17, 22, 156, 245
TspGWI ACGGA 2 cut(s) 59, 72
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 64
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.