Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Reverse (-)

2197854 .. 2199773

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCGTCTTCAGTTGCCGTTTGCAACTCACCGGTGTTCTCTCCGTCTTCGTCTCTTTTCTGCAACAAACCGTTGAACACTTCTCCGGCACATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTACTTCTCCTTCCGCCGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCTGAAACCGCCGGCTAAACTAGGGTTTGGATCGGACTCTGGTCCGGGAAGCATTCTGAAGAGGAAACGACCGACGACGCTTGATATACCGGTGGCTCCGGTTGGTATTGCAGCTCCTATATCGAATGCAGATACGCCGAGGGAGGAGAGTAGAGCAGTGGAGAGGGAAGGTGATGGTTACTCTGTTTATTGCAAGAGAGGTAAAAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAATCTTCAAGGAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACCAACAGCGGCTGAGTTTGCGGCTAAGAACTTGTGTAGTAACATTCTTGGCGAGATAGTTGGTGGGAGGAACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAGCGACTGATTCTGAGTTTCTCAAGGAAAAAAACGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGACGGAAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATTCGCGGAGGCCTTGACTTCTGACCACCGCCCTTCCAGAGATGATGAACGAAACAGAATTGAGAGCTCGGGCGGTTATGTGGATACATTCAATAGTGTTTGGAGAATTCAAGGATCATTAGCGGTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGATAAATATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTCTATGGGACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGACCGATCAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGCTCCTTGGACGATATTAGTGTGATGTTGATTCAGTTGTGCCACCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

380

Amino Acids

40.71

Weight (kDa)

7.03

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	123 - 369	1.1e-59	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	2 cut(s)	158, 734
AclI	AACGTT	1 cut(s)	630
AclWI	GGATC	4 cut(s)	226, 417, 437, 850
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	1 cut(s)	834
AcuI	CTGAAG	1 cut(s)	266
AgeI	ACCGGT	2 cut(s)	31, 277
AgsI	TTSAA	5 cut(s)	76, 437, 572, 820, 839
AluBI	AGCT	6 cut(s)	302, 401, 578, 795, 1007, 1066
AluI	AGCT	6 cut(s)	302, 401, 578, 795, 1007, 1066
Alw21I	GWGCWC	1 cut(s)	797
Alw26I	GTCTC	4 cut(s)	57, 114, 165, 191
AlwI	GGATC	4 cut(s)	226, 417, 437, 850
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	796
AoxI	GGCC	2 cut(s)	687, 738
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	834
AsiGI	ACCGGT	2 cut(s)	31, 277
AspS9I	GGNCC	3 cut(s)	230, 485, 1026
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	21, 371, 710
AvaI	CYCGRG	1 cut(s)	796
AvaII	GGWCC	3 cut(s)	230, 485, 1026
BalI	TGGCCA	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	797
BauI	CACGAG	3 cut(s)	643, 938, 1086
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	5 cut(s)	126, 356, 431, 467, 956
BceAI	ACGGC	3 cut(s)	2, 672, 690
BcgI	CGANNNNNNTGC	4 cut(s)	999, 1033, 1048, 1082
BciVI	GTATCC	1 cut(s)	805
BclI	TGATCA	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	4 cut(s)	57, 114, 165, 191
BfaI	CTAG	3 cut(s)	209, 596, 858
BfuI	GTATCC	1 cut(s)	805
BisI	GCNGC	5 cut(s)	156, 300, 495, 507, 640
BlsI	GCNGC	5 cut(s)	157, 301, 496, 508, 641
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	3 cut(s)	230, 485, 1026
BmeT110I	CYCGRG	1 cut(s)	796
BmgT120I	GGNCC	3 cut(s)	230, 485, 1026
BmiI	GGNNCC	3 cut(s)	285, 1027, 1093
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	862, 965
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	326, 1095
BsaWI	WCCGGW	3 cut(s)	31, 277, 286
Bse118I	RCCGGY	3 cut(s)	31, 199, 277
Bse3DI	GCAATG	1 cut(s)	1046
Bse8I	GATNNNNATC	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	326, 1095
BseJI	GATNNNNATC	1 cut(s)	876
BseMI	GCAATG	1 cut(s)	1046
BseMII	CTCAG	2 cut(s)	489, 600
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	158, 734
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	689, 740
BshTI	ACCGGT	2 cut(s)	31, 277
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	796
BsiSI	CCGG	6 cut(s)	32, 86, 200, 233, 278, 287
BslFI	GGGAC	2 cut(s)	986, 1039
BsmAI	GTCTC	4 cut(s)	57, 114, 165, 191
BsmBI	CGTCTC	3 cut(s)	57, 165, 191
BsmFI	GGGAC	2 cut(s)	986, 1039
BsmI	GAATGC	2 cut(s)	240, 319
BsnI	GGCC	2 cut(s)	689, 740
BsoBI	CYCGRG	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
BspANI	GGCC	2 cut(s)	689, 740
BspCNI	CTCAG	2 cut(s)	490, 601
BspFNI	CGCG	2 cut(s)	158, 734
BspLI	GGNNCC	3 cut(s)	285, 1027, 1093
BspPI	GGATC	4 cut(s)	226, 417, 437, 850
BsrDI	GCAATG	1 cut(s)	1046
BsrFI	RCCGGY	3 cut(s)	31, 199, 277
BssAI	RCCGGY	3 cut(s)	31, 199, 277
BssECI	CCNNGG	2 cut(s)	326, 1095
BssMI	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
BssSI	CACGAG	3 cut(s)	643, 938, 1086
BssT1I	CCWWGG	1 cut(s)	1095
Bst2BI	CACGAG	3 cut(s)	643, 938, 1086
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	201, 1053, 1057
BstDEI	CTNAG	4 cut(s)	498, 510, 609, 952
BstFNI	CGCG	2 cut(s)	158, 734
BstKTI	GATC	7 cut(s)	221, 412, 445, 666, 845, 951, 1033
BstMAI	GTCTC	4 cut(s)	57, 114, 165, 191
BstMBI	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 645
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	2 cut(s)	158, 734
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	689, 740
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	3 cut(s)	201, 1053, 1057
CaiI	CAGNNNCTG	1 cut(s)	497
Cfr10I	RCCGGY	3 cut(s)	31, 199, 277
Cfr13I	GGNCC	3 cut(s)	230, 485, 1026
CseI	GACGC	2 cut(s)	147, 274
CspAI	ACCGGT	2 cut(s)	31, 277
CviAII	CATG	1 cut(s)	92
DdeI	CTNAG	4 cut(s)	498, 510, 609, 952
DpnI	GATC	7 cut(s)	220, 411, 444, 665, 844, 950, 1032
DpnII	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	1095
Eco147I	AGGCCT	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	797
Eco47I	GGWCC	3 cut(s)	230, 485, 1026
Eco53kI	GAGCTC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	796
EcoICRI	GAGCTC	1 cut(s)	795
EcoRI	GAATTC	1 cut(s)	834
EcoT14I	CCWWGG	1 cut(s)	1095
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	1095
Esp3I	CGTCTC	3 cut(s)	57, 165, 191
FaeI	CATG	1 cut(s)	95
FaiI	YATR	8 cut(s)	93, 275, 308, 404, 471, 807, 970, 1004
FaqI	GGGAC	2 cut(s)	986, 1039
FatI	CATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	663
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	5 cut(s)	156, 300, 495, 507, 640
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	5 cut(s)	156, 300, 495, 507, 640
FspBI	CTAG	3 cut(s)	209, 596, 858
GluI	GCNGC	5 cut(s)	156, 300, 495, 507, 640
HaeIII	GGCC	2 cut(s)	689, 740
HapII	CCGG	6 cut(s)	32, 86, 200, 233, 278, 287
HgaI	GACGC	2 cut(s)	147, 274
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HinfI	GANTC	7 cut(s)	224, 465, 560, 605, 729, 924, 1120
HpaII	CCGG	6 cut(s)	32, 86, 200, 233, 278, 287
HphI	GGTGA	3 cut(s)	21, 371, 710
Hpy166II	GTNNAC	2 cut(s)	1000, 1072
Hpy188III	TCNNGA	6 cut(s)	190, 765, 858, 946, 989, 1086
Hpy8I	GTNNAC	2 cut(s)	1000, 1072
Hpy99I	CGWCG	3 cut(s)	265, 268, 674
HpyAV	CCTTC	3 cut(s)	159, 350, 771
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	2 cut(s)	586, 630
HpyCH4V	TGCA	7 cut(s)	24, 63, 299, 317, 381, 1020, 1059
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 645
HpyF3I	CTNAG	4 cut(s)	498, 510, 609, 952
HpySE526I	ACGT	2 cut(s)	586, 630
Hsp92II	CATG	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
LmnI	GCTCC	3 cut(s)	289, 307, 1097
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	862, 965
MaeI	CTAG	3 cut(s)	209, 596, 858
MaeII	ACGT	2 cut(s)	586, 630
MaeIII	GTNAC	5 cut(s)	365, 476, 524, 652, 698
MalI	GATC	7 cut(s)	220, 411, 444, 665, 844, 950, 1032
MboI	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
MboII	GAAGA	6 cut(s)	39, 129, 259, 425, 584, 1129
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	797
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	2 cut(s)	786, 834
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	3 cut(s)	218, 474, 569
MmeI	TCCRAC	1 cut(s)	703
Mox20I	TGGCCA	1 cut(s)	689
MroNI	GCCGGC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	6 cut(s)	32, 86, 200, 233, 278, 287
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	2 cut(s)	240, 319
MvnI	CGCG	2 cut(s)	158, 734
MwoI	GCNNNNNNNGC	2 cut(s)	503, 645
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	3 cut(s)	285, 1027, 1093
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	3 cut(s)	476, 652, 698
PceI	AGGCCT	1 cut(s)	740
PctI	GAATGC	2 cut(s)	240, 319
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	605, 729, 924, 1120
PfoI	TCCNGGA	1 cut(s)	232
PinAI	ACCGGT	2 cut(s)	31, 277
PkrI	GCNGC	5 cut(s)	157, 301, 496, 508, 641
PleI	GAGTC	3 cut(s)	218, 473, 568
PpsI	GAGTC	3 cut(s)	218, 473, 568
PshAI	GACNNNNGTC	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	797
Psp1406I	AACGTT	1 cut(s)	630
PspN4I	GGNNCC	3 cut(s)	285, 1027, 1093
PspPI	GGNCC	3 cut(s)	230, 485, 1026
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	5 cut(s)	156, 300, 495, 507, 640
Sau3AI	GATC	7 cut(s)	218, 409, 442, 663, 842, 948, 1030
Sau96I	GGNCC	3 cut(s)	230, 485, 1026
SchI	GAGTC	3 cut(s)	218, 474, 569
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	2 cut(s)	862, 965
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	230, 485, 1026
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	2 cut(s)	786, 834
SseBI	AGGCCT	1 cut(s)	740
SspI	AATATT	2 cut(s)	459, 916
SspMI	CTAG	3 cut(s)	209, 596, 858
SstI	GAGCTC	1 cut(s)	797
StuI	AGGCCT	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	1095
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	2 cut(s)	589, 633
TaqI	TCGA	2 cut(s)	311, 1009
TaqII	GACCGA	2 cut(s)	274, 1043
TasI	AATT	2 cut(s)	786, 834
TauI	GCSGC	4 cut(s)	158, 497, 509, 642
TfiI	GAWTC	4 cut(s)	605, 729, 924, 1120
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	3 cut(s)	476, 652, 698
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	3 cut(s)	476, 652, 698
TspDTI	ATGAA	2 cut(s)	108, 789
TspGWI	ACGGA	6 cut(s)	33, 162, 173, 495, 687, 1054
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	3 cut(s)	230, 485, 1026
XapI	RAATTY	1 cut(s)	834
XbaI	TCTAGA	1 cut(s)	857
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	3 cut(s)	209, 596, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.