AT1G32720

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
11834902 .. 11836631
1730 bp
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UTR
Exon/CDS
Intron
AT1G32720.1

Sequence Viewer

Length: 552 bp
ATGTCGATGGTTGTTAATTCTTCCGACCAAGCAATTACTATGGAAAGTCTCGGAATCTCCAGCGAATTAACCGCCACTGTGATTGGAGAGATGACGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGATGGATTTGTAACTCCGATTTTTTCATCGGCTGATGTAACTGTGACGTCGAGGGAGGAATGTAGAGAGGTTGAAAGAGAAGATAATGATTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTAGAGAGGTTGTGTCAAGATATGAGGACACCGTCAACAATGAGGAGATAAGCAAGCCGAAGTCTATGAAGTTACTAGCACACGCCGGAGACGACGAATCGATTGAGAGACAAGAAAATGAAGACGATGACGGGAGAACAACTGTTGACGACGACGACGGGAGAGGACGAATTAATGTCAGCCGATTGAAAGCTTTGTTGACGATAACGACGGGAGAGGGACGAGGAAATGACTTTGCCGGTAGAAAACTCGTCGGGATGATCGCCGGAGTCGAGATGATGTTATCGGCGTTGTGA

Protein Analysis

183

Amino Acids

20.2

Weight (kDa)

4.64

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 182
AciI CCGC 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 179
AgsI TTSAA 2 cut(s) 206, 445
AluBI AGCT 2 cut(s) 257, 449
AluI AGCT 2 cut(s) 257, 449
Alw26I GTCTC 3 cut(s) 53, 339, 358
AseI ATTAAT 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 384
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 3 cut(s) 53, 339, 358
BfaI CTAG 2 cut(s) 258, 332
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 494
BseCI ATCGAT 1 cut(s) 356
BseGI GGATG 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 356
BsiSI CCGG 3 cut(s) 342, 495, 522
BslFI GGGAC 1 cut(s) 489
BsmAI GTCTC 3 cut(s) 53, 339, 358
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 489
Bsp143I GATC 1 cut(s) 516
BspACI CCGC 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 494
BssMI GATC 1 cut(s) 516
BssNI GRCGYC 1 cut(s) 179
Bst4CI ACNGT 4 cut(s) 79, 175, 289, 400
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 311
BstF5I GGATG 1 cut(s) 519
BstKTI GATC 1 cut(s) 519
BstMAI GTCTC 3 cut(s) 53, 339, 358
BstMBI GATC 1 cut(s) 516
BstV2I GAAGAC 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 356
BsuTUI ATCGAT 1 cut(s) 356
BtsCI GGATG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 494
ClaI ATCGAT 1 cut(s) 356
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviJI RGCY 6 cut(s) 112, 164, 257, 313, 438, 449
CviKI_1 RGCY 6 cut(s) 112, 164, 257, 313, 438, 449
DpnI GATC 1 cut(s) 518
DpnII GATC 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 4 cut(s) 41, 119, 279, 323
FaqI GGGAC 1 cut(s) 489
FokI GGATG 1 cut(s) 526
FspBI CTAG 2 cut(s) 258, 332
GsuI CTGGAG 1 cut(s) 43
HapII CCGG 3 cut(s) 342, 495, 522
Hin1I GRCGYC 1 cut(s) 179
HincII GTYRAC 3 cut(s) 292, 403, 456
HindII GTYRAC 3 cut(s) 292, 403, 456
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 3 cut(s) 54, 353, 525
HpaII CCGG 3 cut(s) 342, 495, 522
Hpy166II GTNNAC 3 cut(s) 292, 403, 456
Hpy188I TCNGA 3 cut(s) 25, 53, 150
Hpy188III TCNNGA 3 cut(s) 273, 511, 529
Hpy8I GTNNAC 3 cut(s) 292, 403, 456
Hpy99I CGWCG 7 cut(s) 184, 353, 410, 413, 416, 469, 512
HpyCH4III ACNGT 4 cut(s) 79, 175, 289, 400
HpyCH4IV ACGT 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 516
LpnPI CCDG 4 cut(s) 73, 355, 508, 535
MaeI CTAG 2 cut(s) 258, 332
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 4 cut(s) 142, 169, 175, 327
MalI GATC 1 cut(s) 518
MboI GATC 1 cut(s) 516
MboII GAAGA 5 cut(s) 12, 224, 258, 261, 389
MluCI AATT 4 cut(s) 16, 33, 65, 426
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 1 cut(s) 48
MseI TTAA 3 cut(s) 15, 68, 429
MspI CCGG 3 cut(s) 342, 495, 522
NdeII GATC 1 cut(s) 516
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 525
PfeI GAWTC 2 cut(s) 54, 353
PflFI GACNNNGTC 1 cut(s) 287
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PshBI ATTAAT 1 cut(s) 429
PsyI GACNNNGTC 1 cut(s) 287
SaqAI TTAA 3 cut(s) 15, 68, 429
Sau3AI GATC 1 cut(s) 516
SchI GAGTC 1 cut(s) 534
SetI ASST 6 cut(s) 106, 182, 204, 259, 267, 451
Sse9I AATT 4 cut(s) 16, 33, 65, 426
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 258, 332
TaaI ACNGT 4 cut(s) 79, 175, 289, 400
TaiI ACGT 1 cut(s) 182
TaqI TCGA 4 cut(s) 5, 182, 356, 528
TasI AATT 4 cut(s) 16, 33, 65, 426
TfiI GAWTC 2 cut(s) 54, 353
Tru1I TTAA 3 cut(s) 15, 68, 429
Tru9I TTAA 3 cut(s) 15, 68, 429
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 147, 338, 390
TspRI CASTG 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 287
VspI ATTAAT 1 cut(s) 429
XspI CTAG 2 cut(s) 258, 332
ZraI GACGTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.