Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Reverse (-)

7828761 .. 7830335

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCCTTGCGCTTTAGCGGTACCAAACTCTCCGATCTTCTCACCGTCGAAAATTCCGTCCATTTTCTGCCGGTCATCTCCTTCTTCATGTTCTTCTCCCAGACTTCTCCATGGTCCACCTCCGACGCCGTTGTCACGGTCCAACAACCCACTTTCCTCGCCCAAGGCTTTCCCGGCAAGGTTTCAGAGTCAGAGGCATGTGAGTAGTATCTGCAAGAAGGAGCCGTCGGGTTTGGGCTCGGGTCCGGGTTTGGCTTTGAAGAGGAAGAGGCCGATGAGGATTGATATTCCGATTGCGCCGGTGAGTTTCGGCGTTGACTCGCCGAAGGTTGAGGAGCGAGTGGAGGCGGTGGAGGTTGACGAAGATGGATACTCGGTTTACTGTAAGAGAGGGAAAAGAGGTCTCATGGAGGATCGGTACTCCGCCGTGGTTGATCTTCATGATAACACCAGACAGGCGTTCTTTGGTGTGTTTGATGGGCATGGAGGTTCAAAGGCAGCTGAATTTGCAGCAAAGAACTTGGATAAGAACATCGTGGGTCGTTTGGCGAGTGGAGGAGAAGAGAAGGTCATGGAAGCAGTGAAAGATGGTTATTTGGCGACTGATGTTGAGTTTTTGAAAGAGGATGTTAGTGGTGGTGCTTGCTGTGTGACTGCCTTGGTACAGAAAGGTAATCTGGTGGTGTCGAATGCTGGCGATTGCCGGGCTGTTATGAGCCGAGGAGGGGTTGCTGAGGCCCTTACGTCTGATCATCATCCTTGTAGGACAGATGAGAGAGCCAGAATTGAAAGCTCGGGTGGTTATGTGGATTATTGCCGCGGTGTTTGGAGAATACAAGGGTCTCTTGCTGTTTCAAGAGGAATTGGAGATCGACAGCTAAAGCAGTGGGTTATAGCAGAACCAGAGACTCAAGTCCTAAAAATCAATCATGAATGCGAGTTCTTAATGTTAGCTTCTGACGGTCTTTGGGACAAGGTTACTAATCAAGAGGCAGTTGACGTAGTTCGCCCTCTATGCGTTGGAATTGATAAGCCGGAGCTGTTTTCTGCTTGTAAAAAGCTTGTTGATCTTTCAATAAGTAGAGGTTCCATGGACGATACAAGCGTGATGATAATCCAATTAGGCCGTTTTGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

380

Amino Acids

40.98

Weight (kDa)

7.91

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	125 - 366	2.1e-58	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	819
AciI	CCGC	5 cut(s)	17, 347, 423, 817, 819
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	51, 503
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	3 cut(s)	21, 419, 663
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	6 cut(s)	259, 492, 619, 788, 855, 1074
AluBI	AGCT	6 cut(s)	500, 792, 877, 953, 1039, 1060
AluI	AGCT	6 cut(s)	500, 792, 877, 953, 1039, 1060
Alw26I	GTCTC	3 cut(s)	407, 846, 899
AlwI	GGATC	1 cut(s)	420
Ama87I	CYCGRG	2 cut(s)	238, 793
AoxI	GGCC	3 cut(s)	269, 735, 1123
ApeKI	GCWGC	2 cut(s)	497, 509
ApoI	RAATTY	2 cut(s)	51, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	11, 298
AspS9I	GGNCC	4 cut(s)	113, 138, 242, 736
AsuC2I	CCSGG	3 cut(s)	173, 246, 704
AsuHPI	GGTGA	2 cut(s)	33, 313
AvaI	CYCGRG	2 cut(s)	238, 793
AvaII	GGWCC	3 cut(s)	113, 138, 242
BaeI	ACNNNNGTAYC	2 cut(s)	1089, 1122
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	509, 521
BccI	CCATC	3 cut(s)	359, 470, 581
BceAI	ACGGC	4 cut(s)	112, 208, 410, 1110
BciVI	GTATCC	1 cut(s)	362
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	3 cut(s)	173, 246, 704
BcoDI	GTCTC	3 cut(s)	407, 846, 899
BfuI	GTATCC	1 cut(s)	362
BisI	GCNGC	3 cut(s)	498, 510, 817
BlsI	GCNGC	3 cut(s)	499, 511, 818
Bme1390I	CCNGG	3 cut(s)	173, 246, 704
Bme18I	GGWCC	3 cut(s)	113, 138, 242
BmeT110I	CYCGRG	2 cut(s)	238, 793
BmgT120I	GGNCC	4 cut(s)	113, 138, 242, 736
BmiI	GGNNCC	4 cut(s)	21, 222, 243, 1087
BmrFI	CCNGG	3 cut(s)	173, 246, 704
BoxI	GACNNNNGTC	1 cut(s)	911
Bpu10I	CCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	894
BpuMI	CCSGG	3 cut(s)	173, 246, 704
BsaBI	GATNNNNATC	2 cut(s)	753, 1112
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	407, 846
BsaJI	CCNNGG	7 cut(s)	109, 162, 426, 657, 718, 817, 1089
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse118I	RCCGGY	2 cut(s)	69, 298
Bse8I	GATNNNNATC	2 cut(s)	753, 1112
BseDI	CCNNGG	7 cut(s)	109, 162, 426, 657, 718, 817, 1089
BseGI	GGATG	2 cut(s)	631, 754
BseJI	GATNNNNATC	2 cut(s)	753, 1112
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	723
BseRI	GAGGAG	3 cut(s)	347, 570, 735
BseXI	GCAGC	2 cut(s)	509, 521
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	3 cut(s)	271, 737, 1125
BshNI	GGYRCC	1 cut(s)	19
BsiHKCI	CYCGRG	2 cut(s)	238, 793
BsiSI	CCGG	6 cut(s)	70, 173, 245, 299, 703, 1034
BslFI	GGGAC	1 cut(s)	983
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	3 cut(s)	407, 846, 899
BsmFI	GGGAC	1 cut(s)	983
BsmI	GAATGC	2 cut(s)	694, 938
BsnI	GGCC	3 cut(s)	271, 737, 1125
Bso31I	GGTCTC	2 cut(s)	407, 846
BsoBI	CYCGRG	2 cut(s)	238, 793
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
Bsp19I	CCATGG	2 cut(s)	109, 1089
BspACI	CCGC	5 cut(s)	17, 347, 423, 817, 819
BspANI	GGCC	3 cut(s)	271, 737, 1125
BspCNI	CTCAG	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	819
BspHI	TCATGA	2 cut(s)	439, 928
BspLI	GGNNCC	4 cut(s)	21, 222, 243, 1087
BspPI	GGATC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	2 cut(s)	407, 846
BsrFI	RCCGGY	2 cut(s)	69, 298
BssAI	RCCGGY	2 cut(s)	69, 298
BssECI	CCNNGG	7 cut(s)	109, 162, 426, 657, 718, 817, 1089
BssMI	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	4 cut(s)	109, 162, 657, 1089
Bst4CI	ACNGT	4 cut(s)	45, 138, 383, 962
Bst6I	CTCTTC	3 cut(s)	254, 260, 555
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	643, 694
BstDEI	CTNAG	1 cut(s)	732
BstDSI	CCRYGG	4 cut(s)	109, 426, 817, 1089
BstF5I	GGATG	2 cut(s)	631, 754
BstFNI	CGCG	1 cut(s)	819
BstHHI	GCGC	2 cut(s)	11, 298
BstKTI	GATC	6 cut(s)	36, 415, 436, 751, 871, 1069
BstMAI	GTCTC	3 cut(s)	407, 846, 899
BstMBI	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 506, 1014
BstNSI	RCATGY	1 cut(s)	200
BstPAI	GACNNNNGTC	1 cut(s)	911
BstSCI	CCNGG	3 cut(s)	171, 244, 702
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	2 cut(s)	509, 521
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	271, 737, 1125
BtgI	CCRYGG	4 cut(s)	109, 426, 817, 1089
BtsCI	GGATG	2 cut(s)	631, 754
BtsI	GCAGTG	2 cut(s)	585, 890
BtsIMutI	CAGTG	2 cut(s)	585, 890
Cac8I	GCNNGC	2 cut(s)	643, 694
CciI	TCATGA	2 cut(s)	439, 928
CfoI	GCGC	2 cut(s)	11, 298
Cfr10I	RCCGGY	2 cut(s)	69, 298
Cfr13I	GGNCC	4 cut(s)	113, 138, 242, 736
Cfr42I	CCGCGG	1 cut(s)	820
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	20, 418, 662
CviAII	CATG	9 cut(s)	87, 110, 197, 406, 440, 482, 571, 929, 1090
CviQI	GTAC	3 cut(s)	20, 418, 662
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	6 cut(s)	35, 414, 435, 750, 870, 1068
DpnII	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	254, 260, 555
EarI	CTCTTC	3 cut(s)	254, 260, 555
EciI	GGCGGA	1 cut(s)	412
Eco130I	CCWWGG	4 cut(s)	109, 162, 657, 1089
Eco24I	GRGCYC	1 cut(s)	239
Eco31I	GGTCTC	2 cut(s)	407, 846
Eco47I	GGWCC	3 cut(s)	113, 138, 242
Eco88I	CYCGRG	2 cut(s)	238, 793
EcoO109I	RGGNCCY	1 cut(s)	736
EcoT14I	CCWWGG	4 cut(s)	109, 162, 657, 1089
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	4 cut(s)	109, 162, 657, 1089
FaeI	CATG	9 cut(s)	90, 113, 200, 409, 443, 485, 574, 932, 1093
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	9 cut(s)	86, 109, 196, 405, 439, 481, 570, 928, 1089
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	3 cut(s)	498, 510, 817
FokI	GGATG	2 cut(s)	638, 741
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	498, 510, 817
GlaI	GCGC	2 cut(s)	10, 297
GluI	GCNGC	3 cut(s)	498, 510, 817
HaeIII	GGCC	3 cut(s)	271, 737, 1125
HapII	CCGG	6 cut(s)	70, 173, 245, 299, 703, 1034
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	11, 298
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	9 cut(s)	90, 113, 200, 409, 443, 485, 574, 932, 1093
Hin6I	GCGC	2 cut(s)	9, 296
HinP1I	GCGC	2 cut(s)	9, 296
HincII	GTYRAC	3 cut(s)	316, 358, 997
HindII	GTYRAC	3 cut(s)	316, 358, 997
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	3 cut(s)	187, 317, 907
HpaII	CCGG	6 cut(s)	70, 173, 245, 299, 703, 1034
HphI	GGTGA	2 cut(s)	33, 313
Hpy166II	GTNNAC	5 cut(s)	116, 316, 358, 379, 997
Hpy188I	TCNGA	7 cut(s)	33, 123, 186, 192, 291, 748, 958
Hpy188III	TCNNGA	4 cut(s)	440, 855, 929, 986
Hpy8I	GTNNAC	5 cut(s)	116, 316, 358, 379, 997
Hpy99I	CGWCG	3 cut(s)	49, 127, 229
HpyAV	CCTTC	4 cut(s)	90, 211, 319, 559
HpyCH4III	ACNGT	4 cut(s)	45, 138, 383, 962
HpyCH4IV	ACGT	2 cut(s)	743, 999
HpyCH4V	TGCA	2 cut(s)	213, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 506, 1014
HpyF3I	CTNAG	1 cut(s)	732
HpySE526I	ACGT	2 cut(s)	743, 999
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	9 cut(s)	90, 113, 200, 409, 443, 485, 574, 932, 1093
HspAI	GCGC	2 cut(s)	9, 296
KpnI	GGTACC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	748
KspI	CCGCGG	1 cut(s)	820
Kzo9I	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
LmnI	GCTCC	3 cut(s)	220, 334, 1036
Lsp1109I	GCAGC	2 cut(s)	509, 521
MaeII	ACGT	2 cut(s)	743, 999
MaeIII	GTNAC	3 cut(s)	132, 649, 976
MalI	GATC	6 cut(s)	35, 414, 435, 750, 870, 1068
MboI	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
MboII	GAAGA	8 cut(s)	28, 75, 84, 271, 277, 374, 428, 572
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	6 cut(s)	51, 503, 783, 861, 1023, 1118
MlyI	GAGTC	3 cut(s)	196, 311, 901
MmeI	TCCRAC	3 cut(s)	146, 165, 1000
MseI	TTAA	1 cut(s)	944
MspA1I	CMGCKG	2 cut(s)	500, 819
MspI	CCGG	6 cut(s)	70, 173, 245, 299, 703, 1034
MspR9I	CCNGG	3 cut(s)	173, 246, 704
Mva1269I	GAATGC	2 cut(s)	694, 938
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	3 cut(s)	173, 506, 1014
NciI	CCSGG	3 cut(s)	173, 246, 704
NcoI	CCATGG	2 cut(s)	109, 1089
NdeII	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
NlaIII	CATG	9 cut(s)	90, 113, 200, 409, 443, 485, 574, 932, 1093
NlaIV	GGNNCC	4 cut(s)	21, 222, 243, 1087
NmeAIII	GCCGAG	1 cut(s)	743
NmuCI	GTSAC	2 cut(s)	132, 649
NspI	RCATGY	1 cut(s)	200
PagI	TCATGA	2 cut(s)	439, 928
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 1101
PctI	GAATGC	2 cut(s)	694, 938
PkrI	GCNGC	3 cut(s)	499, 511, 818
PleI	GAGTC	3 cut(s)	195, 311, 901
PpsI	GAGTC	3 cut(s)	195, 311, 901
PshAI	GACNNNNGTC	1 cut(s)	911
PspN4I	GGNNCC	4 cut(s)	21, 222, 243, 1087
PspPI	GGNCC	4 cut(s)	113, 138, 242, 736
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	21, 419, 663
RsaNI	GTAC	3 cut(s)	20, 418, 662
SacII	CCGCGG	1 cut(s)	820
SaqAI	TTAA	1 cut(s)	944
SatI	GCNGC	3 cut(s)	498, 510, 817
Sau3AI	GATC	6 cut(s)	33, 412, 433, 748, 868, 1066
Sau96I	GGNCC	4 cut(s)	113, 138, 242, 736
SchI	GAGTC	3 cut(s)	196, 311, 901
ScrFI	CCNGG	3 cut(s)	173, 246, 704
SduI	GDGCHC	1 cut(s)	239
Sfr303I	CCGCGG	1 cut(s)	820
SgrAI	CRCCGGYG	1 cut(s)	298
SgrBI	CCGCGG	1 cut(s)	820
SinI	GGWCC	3 cut(s)	113, 138, 242
SmlI	CTYRAG	1 cut(s)	909
SmoI	CTYRAG	1 cut(s)	909
Sse9I	AATT	6 cut(s)	51, 503, 783, 861, 1023, 1118
SsiI	CCGC	5 cut(s)	17, 347, 423, 817, 819
StyD4I	CCNGG	3 cut(s)	171, 244, 702
StyI	CCWWGG	4 cut(s)	109, 162, 657, 1089
TaaI	ACNGT	4 cut(s)	45, 138, 383, 962
TaiI	ACGT	2 cut(s)	746, 1002
TaqI	TCGA	3 cut(s)	47, 686, 871
TasI	AATT	6 cut(s)	51, 503, 783, 861, 1023, 1118
TauI	GCSGC	1 cut(s)	819
Tru1I	TTAA	1 cut(s)	944
Tru9I	TTAA	1 cut(s)	944
TscAI	CASTG	2 cut(s)	585, 890
TseFI	GTSAC	2 cut(s)	132, 649
TseI	GCWGC	2 cut(s)	497, 509
Tsp45I	GTSAC	2 cut(s)	132, 649
TspDTI	ATGAA	3 cut(s)	75, 428, 945
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	585, 890
VpaK11BI	GGWCC	3 cut(s)	113, 138, 242
XapI	RAATTY	2 cut(s)	51, 503
XceI	RCATGY	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.