MD07G1223700.v1.1

phosphatase 2C

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
30057141 .. 30058564
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1223700.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGCCTTGCGCTTTGGTGGTGCCGAACTCGCCGATTTTTTCGCCGTCGCAAATTCCCTCCCATTTTTTCCGGTCGTCGGCCTTAGCTTCCCCTTCTGCCTGTTCTTCGCCTAGAGTCCTCCATGGCGCGCCGCCCACACCGTCGCGGTCGCCGGCTTTGACGACGCCGGCTTTTGAGTCTCGGTTTCAGAGGCAGTTGATAAGCGAGTGCCAGAAGCAGGCTTCGGGTTTGGCTCTGAAGAGGAAGAGGCCGATGATGATTGATATTCCGGTGGCGCCCTTGGTGAATTTTAAGGTGGAGTCGAGTGAGGGTGCGGCGGAGAGAGTGGAGGTGCTGGAGGTTGATGAGGATGTGTATTCGGTTTATTGTAAGAGGGGGAGGAGAGGTCCAATGGAGGATCGTTACTCTGCTGTTGTTGATCTTCACGATGATTCGAGACAGGTATTCTTTGGTGTGTTTGATGGGCATGGAGGAGCAAAAGCAGCTGAATTTGCAGCCAAGAACTTGACTAAAAACATTGCGGATCTTTTGACGGGTGAAAGTGAAGAGGAAATCGTGGAAGCAGTCAAAGATGGTTATCTAACCACCGATGTCGAGTTTCTGAAGGAGGATGTTGCTGGCGGCGCATGCTGTGTGACTGCCTTGATACGAAAGGGCAACCTTGTGGTGTCCAATGCCGGTGACTGTCGTGCTGTTATGAGCCGAGGAGGGGTTGCCGAGGCCCTTACATCCGATCATCATCCTTCTAGAATAGATGAAAGGGAGAGGATTGAGACCACGGTGAGCATTCAAATATGTGCACATGGATTCGAGGATTTGATATTCGGTGGTTATGTAGATTGTTGCCGCGGTGTTTGGAGAATTCAGGGATCTCTTGCTGCTTCGAGATCAATTGGAGATAGACAGCTTAAAGAATGGGTGATAGCAGAACCAGAGACTAAAGTCTTGAGAATAGACCCCGAATGCGAGTTTTTAATGTTAGCTTCTGATGGCCTTTGGGACAAGGTAATTTTAGAACTAAGCTCATTCATTCGCTCACGTTTTCGTTTAGAATTACTTCGAAGACCAAAAGTCTAA

Protein Analysis

359

Amino Acids

39.37

Weight (kDa)

5.77

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 120 - 336 1.3e-42 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 274
AccII CGCG 3 cut(s) 128, 145, 849
AciI CCGC 8 cut(s) 131, 145, 314, 317, 521, 621, 847, 849
AclWI GGATC 3 cut(s) 405, 531, 877
AcsI RAATTY 4 cut(s) 51, 286, 488, 861
AcuI CTGAAG 2 cut(s) 257, 623
AcyI GRCGYC 2 cut(s) 164, 275
AfiI CCNNNNNNNGG 3 cut(s) 76, 217, 709
AgsI TTSAA 1 cut(s) 791
AhdI GACNNNNNGTC 1 cut(s) 1070
AluBI AGCT 5 cut(s) 86, 485, 907, 983, 1023
AluI AGCT 5 cut(s) 86, 485, 907, 983, 1023
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 4 cut(s) 183, 430, 767, 929
Alw44I GTGCAC 1 cut(s) 798
AlwI GGATC 3 cut(s) 405, 531, 877
AoxI GGCC 4 cut(s) 78, 248, 720, 991
ApaLI GTGCAC 1 cut(s) 798
ApeKI GCWGC 3 cut(s) 482, 494, 878
ApoI RAATTY 4 cut(s) 51, 286, 488, 861
AscI GGCGCGCC 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 5 cut(s) 11, 128, 130, 277, 626
AspS9I GGNCC 2 cut(s) 386, 721
AsuHPI GGTGA 5 cut(s) 295, 548, 692, 793, 931
AsuII TTCGAA 1 cut(s) 1060
AvaII GGWCC 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 802
BanI GGYRCC 2 cut(s) 19, 274
BbsI GAAGAC 1 cut(s) 1069
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 3 cut(s) 494, 506, 865
BccI CCATC 3 cut(s) 455, 566, 983
BceAI ACGGC 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 183, 430, 767, 929
BfaI CTAG 2 cut(s) 111, 747
BfoI RGCGCY 1 cut(s) 278
BisI GCNGC 7 cut(s) 131, 315, 483, 495, 622, 847, 879
BlsI GCNGC 7 cut(s) 132, 316, 484, 496, 623, 848, 880
Bme18I GGWCC 1 cut(s) 386
BmeRI GACNNNNNGTC 1 cut(s) 1070
BmgT120I GGNCC 2 cut(s) 386, 721
BmiI GGNNCC 2 cut(s) 21, 276
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 1069
BpmI CTGGAG 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 1060
BpuEI CTTGAG 1 cut(s) 967
BsaBI GATNNNNATC 2 cut(s) 576, 738
BsaHI GRCGYC 2 cut(s) 164, 275
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 6 cut(s) 121, 279, 703, 717, 777, 847
BsaWI WCCGGW 2 cut(s) 69, 268
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 217, 709
Bse118I RCCGGY 3 cut(s) 151, 166, 677
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 2 cut(s) 576, 738
BseDI CCNNGG 6 cut(s) 121, 279, 703, 717, 777, 847
BseGI GGATG 4 cut(s) 355, 616, 728, 739
BseJI GATNNNNATC 2 cut(s) 576, 738
BseLI CCNNNNNNNGG 3 cut(s) 76, 217, 709
BseMI GCAATG 1 cut(s) 516
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 3 cut(s) 394, 486, 720
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 3 cut(s) 494, 506, 865
Bsh1236I CGCG 3 cut(s) 128, 145, 849
Bsh1285I CGRYCG 2 cut(s) 74, 149
BshFI GGCC 4 cut(s) 80, 250, 722, 993
BshNI GGYRCC 2 cut(s) 19, 274
BsiEI CGRYCG 2 cut(s) 74, 149
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 5 cut(s) 70, 152, 167, 269, 678
BslFI GGGAC 1 cut(s) 1013
BslI CCNNNNNNNGG 3 cut(s) 76, 217, 709
BsmAI GTCTC 4 cut(s) 183, 430, 767, 929
BsmFI GGGAC 1 cut(s) 1013
BsmI GAATGC 2 cut(s) 786, 968
BsnI GGCC 4 cut(s) 80, 250, 722, 993
Bso31I GGTCTC 1 cut(s) 767
Bsp119I TTCGAA 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 6 cut(s) 397, 418, 523, 733, 869, 887
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 8 cut(s) 131, 145, 314, 317, 521, 621, 847, 849
BspANI GGCC 4 cut(s) 80, 250, 722, 993
BspFNI CGCG 3 cut(s) 128, 145, 849
BspLI GGNNCC 2 cut(s) 21, 276
BspPI GGATC 3 cut(s) 405, 531, 877
BspT104I TTCGAA 1 cut(s) 1060
BspT107I GGYRCC 2 cut(s) 19, 274
BspTNI GGTCTC 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 516
BsrFI RCCGGY 3 cut(s) 151, 166, 677
BssAI RCCGGY 3 cut(s) 151, 166, 677
BssECI CCNNGG 6 cut(s) 121, 279, 703, 717, 777, 847
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 6 cut(s) 397, 418, 523, 733, 869, 887
BssNI GRCGYC 2 cut(s) 164, 275
BssT1I CCWWGG 2 cut(s) 121, 279
Bst4CI ACNGT 3 cut(s) 141, 686, 781
Bst6I CTCTTC 3 cut(s) 233, 239, 540
BstACI GRCGYC 2 cut(s) 164, 275
BstBI TTCGAA 1 cut(s) 1060
BstC8I GCNNGC 6 cut(s) 128, 153, 168, 219, 619, 628
BstDEI CTNAG 2 cut(s) 82, 1019
BstDSI CCRYGG 3 cut(s) 121, 777, 847
BstF5I GGATG 4 cut(s) 355, 616, 728, 739
BstFNI CGCG 3 cut(s) 128, 145, 849
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 5 cut(s) 11, 128, 130, 277, 626
BstKTI GATC 6 cut(s) 400, 421, 526, 736, 872, 890
BstMAI GTCTC 4 cut(s) 183, 430, 767, 929
BstMBI GATC 6 cut(s) 397, 418, 523, 733, 869, 887
BstMCI CGRYCG 2 cut(s) 74, 149
BstMWI GCNNNNNNNGC 5 cut(s) 28, 482, 491, 623, 627
BstNSI RCATGY 1 cut(s) 630
BstPAI GACNNNNGTC 1 cut(s) 941
BstSLI GKGCMC 1 cut(s) 802
BstUI CGCG 3 cut(s) 128, 145, 849
BstV1I GCAGC 3 cut(s) 494, 506, 865
BstV2I GAAGAC 1 cut(s) 1069
BstX2I RGATCY 2 cut(s) 523, 869
BstYI RGATCY 2 cut(s) 523, 869
BsuRI GGCC 4 cut(s) 80, 250, 722, 993
BtgI CCRYGG 3 cut(s) 121, 777, 847
BtsCI GGATG 4 cut(s) 355, 616, 728, 739
Cac8I GCNNGC 6 cut(s) 128, 153, 168, 219, 619, 628
CfoI GCGC 5 cut(s) 11, 128, 130, 277, 626
Cfr10I RCCGGY 3 cut(s) 151, 166, 677
Cfr13I GGNCC 2 cut(s) 386, 721
Cfr42I CCGCGG 1 cut(s) 850
CseI GACGC 1 cut(s) 172
CviAII CATG 4 cut(s) 122, 467, 627, 803
DdeI CTNAG 2 cut(s) 82, 1019
DinI GGCGCC 1 cut(s) 276
DpnI GATC 6 cut(s) 399, 420, 525, 735, 871, 889
DpnII GATC 6 cut(s) 397, 418, 523, 733, 869, 887
DriI GACNNNNNGTC 1 cut(s) 1070
Eam1104I CTCTTC 3 cut(s) 233, 239, 540
Eam1105I GACNNNNNGTC 1 cut(s) 1070
EarI CTCTTC 3 cut(s) 233, 239, 540
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 121, 279
Eco31I GGTCTC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 386
Eco57I CTGAAG 2 cut(s) 257, 623
EcoO109I RGGNCCY 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 861
EcoT14I CCWWGG 2 cut(s) 121, 279
EgeI GGCGCC 1 cut(s) 276
EheI GGCGCC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 121, 279
FaeI CATG 4 cut(s) 125, 470, 630, 806
FaiI YATR 7 cut(s) 123, 468, 628, 698, 796, 804, 834
FaqI GGGAC 1 cut(s) 1013
FatI CATG 4 cut(s) 121, 466, 626, 802
Fnu4HI GCNGC 7 cut(s) 131, 315, 483, 495, 622, 847, 879
FokI GGATG 4 cut(s) 362, 623, 715, 726
Fsp4HI GCNGC 7 cut(s) 131, 315, 483, 495, 622, 847, 879
FspBI CTAG 2 cut(s) 111, 747
GlaI GCGC 5 cut(s) 10, 127, 129, 276, 625
GluI GCNGC 7 cut(s) 131, 315, 483, 495, 622, 847, 879
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 4 cut(s) 80, 250, 722, 993
HapII CCGG 5 cut(s) 70, 152, 167, 269, 678
HgaI GACGC 1 cut(s) 172
HhaI GCGC 5 cut(s) 11, 128, 130, 277, 626
Hin1I GRCGYC 2 cut(s) 164, 275
Hin1II CATG 4 cut(s) 125, 470, 630, 806
Hin6I GCGC 5 cut(s) 9, 126, 128, 275, 624
HinP1I GCGC 5 cut(s) 9, 126, 128, 275, 624
HinfI GANTC 5 cut(s) 114, 176, 299, 431, 807
HpaII CCGG 5 cut(s) 70, 152, 167, 269, 678
HphI GGTGA 5 cut(s) 295, 548, 692, 793, 931
Hpy166II GTNNAC 1 cut(s) 800
Hpy188I TCNGA 5 cut(s) 189, 237, 603, 733, 988
Hpy188III TCNNGA 5 cut(s) 425, 435, 747, 885, 946
Hpy8I GTNNAC 1 cut(s) 800
Hpy99I CGWCG 4 cut(s) 49, 79, 145, 166
HpyAV CCTTC 3 cut(s) 102, 598, 753
HpyCH4III ACNGT 3 cut(s) 141, 686, 781
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 2 cut(s) 494, 800
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 482, 491, 623, 627
HpyF3I CTNAG 2 cut(s) 82, 1019
HpySE526I ACGT 1 cut(s) 1039
Hsp92I GRCGYC 2 cut(s) 164, 275
Hsp92II CATG 4 cut(s) 125, 470, 630, 806
HspAI GCGC 5 cut(s) 9, 126, 128, 275, 624
KasI GGCGCC 1 cut(s) 274
KroI GCCGGC 2 cut(s) 151, 166
KroNI GCCGGC 2 cut(s) 153, 168
KspI CCGCGG 1 cut(s) 850
Kzo9I GATC 6 cut(s) 397, 418, 523, 733, 869, 887
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 3 cut(s) 494, 506, 865
MaeI CTAG 2 cut(s) 111, 747
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 3 cut(s) 401, 634, 680
MalI GATC 6 cut(s) 399, 420, 525, 735, 871, 889
MboI GATC 6 cut(s) 397, 418, 523, 733, 869, 887
MboII GAAGA 6 cut(s) 96, 250, 256, 413, 557, 1074
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 2 cut(s) 523, 869
MhlI GDGCHC 1 cut(s) 802
MluCI AATT 7 cut(s) 51, 286, 488, 861, 891, 1008, 1052
Mly113I GGCGCC 1 cut(s) 275
MlyI GAGTC 3 cut(s) 123, 185, 308
MroNI GCCGGC 2 cut(s) 151, 166
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 3 cut(s) 291, 909, 974
MspA1I CMGCKG 2 cut(s) 485, 849
MspI CCGG 5 cut(s) 70, 152, 167, 269, 678
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 2 cut(s) 786, 968
MvnI CGCG 3 cut(s) 128, 145, 849
MwoI GCNNNNNNNGC 5 cut(s) 28, 482, 491, 623, 627
NaeI GCCGGC 2 cut(s) 153, 168
NarI GGCGCC 1 cut(s) 275
NcoI CCATGG 1 cut(s) 121
NdeII GATC 6 cut(s) 397, 418, 523, 733, 869, 887
NgoMIV GCCGGC 2 cut(s) 151, 166
NlaIII CATG 4 cut(s) 125, 470, 630, 806
NlaIV GGNNCC 2 cut(s) 21, 276
NmeAIII GCCGAG 2 cut(s) 728, 742
NmuCI GTSAC 2 cut(s) 634, 680
NspI RCATGY 1 cut(s) 630
NspV TTCGAA 1 cut(s) 1060
PaeI GCATGC 1 cut(s) 630
PalAI GGCGCGCC 1 cut(s) 126
PauI GCGCGC 1 cut(s) 126
PctI GAATGC 2 cut(s) 786, 968
PdiI GCCGGC 2 cut(s) 153, 168
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 431, 807
PkrI GCNGC 7 cut(s) 132, 316, 484, 496, 623, 848, 880
PleI GAGTC 3 cut(s) 122, 184, 307
PluTI GGCGCC 1 cut(s) 278
PpsI GAGTC 3 cut(s) 122, 184, 307
PshAI GACNNNNGTC 1 cut(s) 941
PspN4I GGNNCC 2 cut(s) 21, 276
PspPI GGNCC 2 cut(s) 386, 721
PsuI RGATCY 2 cut(s) 523, 869
PteI GCGCGC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 485
SacII CCGCGG 1 cut(s) 850
SaqAI TTAA 3 cut(s) 291, 909, 974
SatI GCNGC 7 cut(s) 131, 315, 483, 495, 622, 847, 879
Sau3AI GATC 6 cut(s) 397, 418, 523, 733, 869, 887
Sau96I GGNCC 2 cut(s) 386, 721
SchI GAGTC 3 cut(s) 123, 185, 308
SduI GDGCHC 1 cut(s) 802
SfoI GGCGCC 1 cut(s) 276
Sfr303I CCGCGG 1 cut(s) 850
SfuI TTCGAA 1 cut(s) 1060
SgrBI CCGCGG 1 cut(s) 850
SgsI GGCGCGCC 1 cut(s) 126
SinI GGWCC 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 946
SmoI CTYRAG 1 cut(s) 946
SphI GCATGC 1 cut(s) 630
Sse9I AATT 7 cut(s) 51, 286, 488, 861, 891, 1008, 1052
SsiI CCGC 8 cut(s) 131, 145, 314, 317, 521, 621, 847, 849
SspDI GGCGCC 1 cut(s) 274
SspMI CTAG 2 cut(s) 111, 747
StyI CCWWGG 2 cut(s) 121, 279
TaaI ACNGT 3 cut(s) 141, 686, 781
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 6 cut(s) 302, 434, 594, 810, 884, 1060
TasI AATT 7 cut(s) 51, 286, 488, 861, 891, 1008, 1052
TauI GCSGC 4 cut(s) 133, 317, 624, 849
TfiI GAWTC 2 cut(s) 431, 807
Tru1I TTAA 3 cut(s) 291, 909, 974
Tru9I TTAA 3 cut(s) 291, 909, 974
TseFI GTSAC 2 cut(s) 634, 680
TseI GCWGC 3 cut(s) 482, 494, 878
Tsp45I GTSAC 2 cut(s) 634, 680
TspDTI ATGAA 2 cut(s) 771, 1018
VneI GTGCAC 1 cut(s) 798
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 4 cut(s) 51, 286, 488, 861
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 2 cut(s) 111, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.