AT1G29620

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10347363 .. 10349017
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29620.1

Sequence Viewer

Length: 441 bp
ATGTCGATGGTTGTTAATTCTTCCGACCAAGCAATTACTATGGAAAGTCTCGGAATCTCCGGGCATTGTGACGATGTTTTTTGCAACGAATTAACCGCCACTGTGATTGGAGAGATGACGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGATGGATTTGTAGCTCCGATTTCTTCATCGGCCGATGTAACTGTGACGTCGAGGGAGGAATGTAGAGAGGTTGAAAGAGAAGGATATGAGGACACCGTCAACAATGAGGAGATAAGCAAGCCGAAGTCTATGAAGTTACTAGCACACGCCGGAGACGACGAATCGATTAAGAGACAAGAAAATGAAGACGATGACGGGAGAACAACTGTTGACGACGACGACGGGAGAGGACGAATTAATGTCAGCCGATTGAAAGCTTTGTTGATGATAACGACGAGAGAGTGA

Protein Analysis

146

Amino Acids

16.08

Weight (kDa)

4.49

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 206
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 203
AgsI TTSAA 2 cut(s) 230, 409
AluBI AGCT 2 cut(s) 170, 413
AluI AGCT 2 cut(s) 170, 413
Alw26I GTCTC 3 cut(s) 53, 303, 322
AoxI GGCC 1 cut(s) 186
AseI ATTAAT 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 348
BccI CCATC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 53, 303, 322
BfaI CTAG 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 60, 306
BsmAI GTCTC 3 cut(s) 53, 303, 322
BsmBI CGTCTC 1 cut(s) 303
BsnI GGCC 1 cut(s) 188
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 188
BspDI ATCGAT 1 cut(s) 320
BssNI GRCGYC 1 cut(s) 203
Bst4CI ACNGT 4 cut(s) 103, 199, 253, 364
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 275
BstMAI GTCTC 3 cut(s) 53, 303, 322
BstMCI CGRYCG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 348
BstZI CGGCCG 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 320
BsuRI GGCC 1 cut(s) 188
BsuTUI ATCGAT 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 320
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviJI RGCY 6 cut(s) 136, 170, 188, 277, 402, 413
CviKI_1 RGCY 6 cut(s) 136, 170, 188, 277, 402, 413
EaeI YGGCCR 1 cut(s) 186
EagI CGGCCG 1 cut(s) 186
EclXI CGGCCG 1 cut(s) 186
Eco52I CGGCCG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 303
FaiI YATR 4 cut(s) 41, 143, 243, 287
FspBI CTAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 188
HapII CCGG 2 cut(s) 60, 306
Hin1I GRCGYC 1 cut(s) 203
HincII GTYRAC 2 cut(s) 256, 367
HindII GTYRAC 2 cut(s) 256, 367
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 2 cut(s) 54, 317
HpaII CCGG 2 cut(s) 60, 306
Hpy166II GTNNAC 2 cut(s) 256, 367
Hpy188I TCNGA 3 cut(s) 25, 53, 174
Hpy8I GTNNAC 2 cut(s) 256, 367
Hpy99I CGWCG 6 cut(s) 208, 317, 374, 377, 380, 433
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 4 cut(s) 103, 199, 253, 364
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 73, 319
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 4 cut(s) 68, 193, 199, 291
MboII GAAGA 3 cut(s) 12, 171, 353
MluCI AATT 4 cut(s) 16, 33, 89, 390
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 6 cut(s) 201, 205, 217, 238, 256, 377
MseI TTAA 4 cut(s) 15, 92, 324, 393
MspI CCGG 2 cut(s) 60, 306
MspR9I CCNGG 1 cut(s) 61
NciI CCSGG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 68, 199
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfeI GAWTC 2 cut(s) 54, 317
PflFI GACNNNGTC 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 393
PsyI GACNNNGTC 1 cut(s) 251
SaqAI TTAA 4 cut(s) 15, 92, 324, 393
ScrFI CCNGG 1 cut(s) 61
SetI ASST 5 cut(s) 130, 172, 206, 228, 415
Sse9I AATT 4 cut(s) 16, 33, 89, 390
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 4 cut(s) 103, 199, 253, 364
TaiI ACGT 1 cut(s) 206
TaqI TCGA 3 cut(s) 5, 206, 320
TasI AATT 4 cut(s) 16, 33, 89, 390
TfiI GAWTC 2 cut(s) 54, 317
Tru1I TTAA 4 cut(s) 15, 92, 324, 393
Tru9I TTAA 4 cut(s) 15, 92, 324, 393
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 2 cut(s) 68, 199
Tsp45I GTSAC 2 cut(s) 68, 199
TspDTI ATGAA 3 cut(s) 171, 302, 354
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 251
VspI ATTAAT 1 cut(s) 393
XspI CTAG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.