Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Forward (+)

46116140 .. 46119766

Gene Structure 3627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG328600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCCGTGCGCTTTAGCGGTACCAAACTCTCCGATCTTCTCACCGTCGAAAATTCCGTCCATTTTCTGCCGGTCATCTCCTTCTTCATGTTCTTCGCCTAGAGTACTTCTCCATGGTCCACCTCCAACGCCGTCGTCACGGTCCAACAACCCACTTTCGTCGCCGAAGGCTTTCCCGGCAAGGTTTCAGAGTCAGAGGCATGTGATTAGTAACTGCAAGAAGGAGCCGTCGGGTTTGGGCTCGGGTCCGGGTTTGGCTTTGAAGAGGAAGAGGCCGATGAGGATTGATATTCCGGCTGCGCCGGTGAGTTTCGGCGTTGACTCGCCGAAGGTTGAGGAGAGAGTGGAGGCGGTGGAGGTTGACGAAGATGGATACTCGGTTTACTGTAAGAGAGGGAAAAGAGGTCTCATGGAGGATCGGTACTCCGCCGTGGTTGATCTTCATGATAATACCAGACAGGCGTTCTTTGGTGTGTTTGATGGGCATGGAGGTTCAAAGGCAGCTGAATTTGCAGCAAAGAACTTGGATAAGAACATCGTGGGTCGTTTGGCGAGTGGAGGAGAAGAGAAGGTCATGGAAGCAGTGAAAGATGGTTATTTGGCGACTGATGTTGAGTTTTTGAAAGAGGATGTTAGTGGTGGTGCTTGCTGTGTGACTGCGTTGGTACAGAAAGGTAATCTGGTGGTGTCGAATGCTGGTGATTGTCGCGCGGTTATGAGCCGAGGAGGGGTTGCTGAGGCCCTTACGTCTGATCATCATCCTTGTAGAACAGATGAAAGAGCCAGAATTGAAAGCTCGGGTGGTTATGTGGATTGTTGCCGCGGTGTTTGGAGAATACAAGGGTCTCTTGCTGTTTCAAGAGGAATTGGAGATCGACAGCTAAAGCAGTGGGTTATAGCAGAACCAGAGACTCAAGTCCTAAAAATCAATCCTGAATGCGAGTTCTTAATGTTAGCTTCTGACGGTCTTTGGGACAAGGTAATTTCAGAACAAGTCTTATTTCAATTGTTTTTGTTTGAAGCAAACTTTCAAATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

346

Amino Acids

37.44

Weight (kDa)

7.5

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	126 - 332	3.9e-51	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	3 cut(s)	708, 710, 822
AciI	CCGC	6 cut(s)	17, 350, 426, 710, 820, 822
AclWI	GGATC	1 cut(s)	423
AcsI	RAATTY	2 cut(s)	51, 506
AfaI	GTAC	4 cut(s)	21, 105, 422, 666
AfiI	CCNNNNNNNGG	1 cut(s)	727
AgsI	TTSAA	8 cut(s)	262, 495, 622, 791, 858, 1004, 1019, 1031
AluBI	AGCT	4 cut(s)	503, 795, 880, 956
AluI	AGCT	4 cut(s)	503, 795, 880, 956
Alw26I	GTCTC	3 cut(s)	410, 849, 902
AlwI	GGATC	1 cut(s)	423
Ama87I	CYCGRG	2 cut(s)	241, 796
AoxI	GGCC	2 cut(s)	272, 738
ApeKI	GCWGC	3 cut(s)	296, 500, 512
ApoI	RAATTY	2 cut(s)	51, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	3 cut(s)	11, 301, 710
AspS9I	GGNCC	4 cut(s)	116, 141, 245, 739
AsuC2I	CCSGG	2 cut(s)	176, 249
AsuHPI	GGTGA	3 cut(s)	33, 316, 710
AvaI	CYCGRG	2 cut(s)	241, 796
AvaII	GGWCC	3 cut(s)	116, 141, 245
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	3 cut(s)	283, 512, 524
BccI	CCATC	3 cut(s)	362, 473, 584
BceAI	ACGGC	3 cut(s)	115, 211, 413
BciVI	GTATCC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	2 cut(s)	176, 249
BcoDI	GTCTC	3 cut(s)	410, 849, 902
BfaI	CTAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	4 cut(s)	297, 501, 513, 820
BlsI	GCNGC	4 cut(s)	298, 502, 514, 821
BmcAI	AGTACT	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	176, 249
Bme18I	GGWCC	3 cut(s)	116, 141, 245
BmeT110I	CYCGRG	2 cut(s)	241, 796
BmgT120I	GGNCC	4 cut(s)	116, 141, 245, 739
BmiI	GGNNCC	3 cut(s)	21, 225, 246
BmrFI	CCNGG	2 cut(s)	176, 249
BoxI	GACNNNNGTC	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	897
BpuMI	CCSGG	2 cut(s)	176, 249
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	2 cut(s)	410, 849
BsaJI	CCNNGG	4 cut(s)	112, 429, 721, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse118I	RCCGGY	2 cut(s)	69, 301
Bse8I	GATNNNNATC	1 cut(s)	756
BseDI	CCNNGG	4 cut(s)	112, 429, 721, 820
BseGI	GGATG	2 cut(s)	634, 757
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMII	CTCAG	1 cut(s)	726
BseRI	GAGGAG	3 cut(s)	350, 573, 738
BseXI	GCAGC	3 cut(s)	283, 512, 524
Bsh1236I	CGCG	3 cut(s)	708, 710, 822
BshFI	GGCC	2 cut(s)	274, 740
BshNI	GGYRCC	1 cut(s)	19
BsiHKCI	CYCGRG	2 cut(s)	241, 796
BsiSI	CCGG	5 cut(s)	70, 176, 248, 293, 302
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	3 cut(s)	410, 849, 902
BsmFI	GGGAC	1 cut(s)	986
BsmI	GAATGC	2 cut(s)	697, 941
BsnI	GGCC	2 cut(s)	274, 740
Bso31I	GGTCTC	2 cut(s)	410, 849
BsoBI	CYCGRG	2 cut(s)	241, 796
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	33, 415, 436, 751, 871
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	6 cut(s)	17, 350, 426, 710, 820, 822
BspANI	GGCC	2 cut(s)	274, 740
BspCNI	CTCAG	1 cut(s)	727
BspFNI	CGCG	3 cut(s)	708, 710, 822
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	21, 225, 246
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	2 cut(s)	410, 849
BsrFI	RCCGGY	2 cut(s)	69, 301
BssAI	RCCGGY	2 cut(s)	69, 301
BssECI	CCNNGG	4 cut(s)	112, 429, 721, 820
BssMI	GATC	5 cut(s)	33, 415, 436, 751, 871
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	45, 141, 386, 965
Bst6I	CTCTTC	3 cut(s)	257, 263, 558
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	1 cut(s)	735
BstDSI	CCRYGG	3 cut(s)	112, 429, 820
BstF5I	GGATG	2 cut(s)	634, 757
BstFNI	CGCG	3 cut(s)	708, 710, 822
BstHHI	GCGC	3 cut(s)	11, 301, 710
BstKTI	GATC	5 cut(s)	36, 418, 439, 754, 874
BstMAI	GTCTC	3 cut(s)	410, 849, 902
BstMBI	GATC	5 cut(s)	33, 415, 436, 751, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 509
BstNSI	RCATGY	1 cut(s)	203
BstPAI	GACNNNNGTC	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	174, 247
BstUI	CGCG	3 cut(s)	708, 710, 822
BstV1I	GCAGC	3 cut(s)	283, 512, 524
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	274, 740
BtgI	CCRYGG	3 cut(s)	112, 429, 820
BtsCI	GGATG	2 cut(s)	634, 757
BtsI	GCAGTG	2 cut(s)	588, 893
BtsIMutI	CAGTG	2 cut(s)	588, 893
Cac8I	GCNNGC	1 cut(s)	646
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	3 cut(s)	11, 301, 710
Cfr10I	RCCGGY	2 cut(s)	69, 301
Cfr13I	GGNCC	4 cut(s)	116, 141, 245, 739
Cfr42I	CCGCGG	1 cut(s)	823
Csp6I	GTAC	4 cut(s)	20, 104, 421, 665
CviAII	CATG	7 cut(s)	87, 113, 200, 409, 443, 485, 574
CviQI	GTAC	4 cut(s)	20, 104, 421, 665
DdeI	CTNAG	1 cut(s)	735
DpnI	GATC	5 cut(s)	35, 417, 438, 753, 873
DpnII	GATC	5 cut(s)	33, 415, 436, 751, 871
Eam1104I	CTCTTC	3 cut(s)	257, 263, 558
EarI	CTCTTC	3 cut(s)	257, 263, 558
EciI	GGCGGA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	2 cut(s)	410, 849
Eco47I	GGWCC	3 cut(s)	116, 141, 245
Eco88I	CYCGRG	2 cut(s)	241, 796
EcoO109I	RGGNCCY	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	7 cut(s)	90, 116, 203, 412, 446, 488, 577
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	7 cut(s)	86, 112, 199, 408, 442, 484, 573
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	297, 501, 513, 820
FokI	GGATG	2 cut(s)	641, 744
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	4 cut(s)	297, 501, 513, 820
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	3 cut(s)	10, 300, 709
GluI	GCNGC	4 cut(s)	297, 501, 513, 820
HaeIII	GGCC	2 cut(s)	274, 740
HapII	CCGG	5 cut(s)	70, 176, 248, 293, 302
HhaI	GCGC	3 cut(s)	11, 301, 710
Hin1II	CATG	7 cut(s)	90, 116, 203, 412, 446, 488, 577
Hin6I	GCGC	3 cut(s)	9, 299, 708
HinP1I	GCGC	3 cut(s)	9, 299, 708
HincII	GTYRAC	2 cut(s)	319, 361
HindII	GTYRAC	2 cut(s)	319, 361
HinfI	GANTC	3 cut(s)	190, 320, 910
HpaII	CCGG	5 cut(s)	70, 176, 248, 293, 302
HphI	GGTGA	3 cut(s)	33, 316, 710
Hpy166II	GTNNAC	4 cut(s)	119, 319, 361, 382
Hpy188I	TCNGA	6 cut(s)	33, 189, 195, 751, 961, 988
Hpy188III	TCNNGA	3 cut(s)	443, 858, 932
Hpy8I	GTNNAC	4 cut(s)	119, 319, 361, 382
Hpy99I	CGWCG	4 cut(s)	49, 136, 163, 232
HpyAV	CCTTC	5 cut(s)	90, 160, 214, 322, 562
HpyCH4III	ACNGT	4 cut(s)	45, 141, 386, 965
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	2 cut(s)	216, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 509
HpyF3I	CTNAG	1 cut(s)	735
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	7 cut(s)	90, 116, 203, 412, 446, 488, 577
HspAI	GCGC	3 cut(s)	9, 299, 708
KpnI	GGTACC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	751
KspI	CCGCGG	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	33, 415, 436, 751, 871
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	3 cut(s)	283, 512, 524
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	3 cut(s)	135, 209, 652
MalI	GATC	5 cut(s)	35, 417, 438, 753, 873
MboI	GATC	5 cut(s)	33, 415, 436, 751, 871
MboII	GAAGA	8 cut(s)	28, 75, 84, 274, 280, 377, 431, 575
MfeI	CAATTG	1 cut(s)	1004
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	7 cut(s)	51, 506, 786, 864, 981, 1004, 1032
MlyI	GAGTC	3 cut(s)	199, 314, 904
MmeI	TCCRAC	2 cut(s)	149, 168
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	947
MspA1I	CMGCKG	2 cut(s)	503, 822
MspI	CCGG	5 cut(s)	70, 176, 248, 293, 302
MspR9I	CCNGG	2 cut(s)	176, 249
MunI	CAATTG	1 cut(s)	1004
Mva1269I	GAATGC	2 cut(s)	697, 941
MvnI	CGCG	3 cut(s)	708, 710, 822
MwoI	GCNNNNNNNGC	2 cut(s)	176, 509
NciI	CCSGG	2 cut(s)	176, 249
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	5 cut(s)	33, 415, 436, 751, 871
NlaIII	CATG	7 cut(s)	90, 116, 203, 412, 446, 488, 577
NlaIV	GGNNCC	3 cut(s)	21, 225, 246
NmeAIII	GCCGAG	1 cut(s)	746
NmuCI	GTSAC	2 cut(s)	135, 652
NspI	RCATGY	1 cut(s)	203
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	2 cut(s)	697, 941
PdmI	GAANNNNTTC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	298, 502, 514, 821
PleI	GAGTC	3 cut(s)	198, 314, 904
PpsI	GAGTC	3 cut(s)	198, 314, 904
PshAI	GACNNNNGTC	1 cut(s)	914
PspN4I	GGNNCC	3 cut(s)	21, 225, 246
PspPI	GGNCC	4 cut(s)	116, 141, 245, 739
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	4 cut(s)	21, 105, 422, 666
RsaNI	GTAC	4 cut(s)	20, 104, 421, 665
SacII	CCGCGG	1 cut(s)	823
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	4 cut(s)	297, 501, 513, 820
Sau3AI	GATC	5 cut(s)	33, 415, 436, 751, 871
Sau96I	GGNCC	4 cut(s)	116, 141, 245, 739
ScaI	AGTACT	1 cut(s)	105
SchI	GAGTC	3 cut(s)	199, 314, 904
ScrFI	CCNGG	2 cut(s)	176, 249
SduI	GDGCHC	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	823
SgrAI	CRCCGGYG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	823
SinI	GGWCC	3 cut(s)	116, 141, 245
SmlI	CTYRAG	1 cut(s)	912
SmoI	CTYRAG	1 cut(s)	912
Sse9I	AATT	7 cut(s)	51, 506, 786, 864, 981, 1004, 1032
SsiI	CCGC	6 cut(s)	17, 350, 426, 710, 820, 822
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	174, 247
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	4 cut(s)	45, 141, 386, 965
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	3 cut(s)	47, 689, 874
TasI	AATT	7 cut(s)	51, 506, 786, 864, 981, 1004, 1032
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	822
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TscAI	CASTG	2 cut(s)	588, 893
TseFI	GTSAC	2 cut(s)	135, 652
TseI	GCWGC	3 cut(s)	296, 500, 512
Tsp45I	GTSAC	2 cut(s)	135, 652
TspDTI	ATGAA	3 cut(s)	75, 431, 789
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	588, 893
VpaK11BI	GGWCC	3 cut(s)	116, 141, 245
XapI	RAATTY	2 cut(s)	51, 506
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	99
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.