Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Forward (+)

16570279 .. 16571893

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAATTGCGCTTTGGTGGTGCCGAACTCGCCGATTTTCTCGCCGTCGAAAATCCCCTCCCATTTTTTCCGGTCGTCGGCTGTAGCTTCCCCGTCGTCGTGTTCTTCGCCTAGAGTCCTACATGGGGCTCCGCCTACGCCGTCGCGATCGTCGGCTTTGACGACGCCGGGTTTCGAGTCTCGGTTTCAGAGGCAGGTGGTTGGCGGGTGCCAGAAGAAGGCTTCGGGTTTGGCTCTGAAGAGGAAGAGGCCGATGATGATTGATATTCCGGTGGCGCCGTCGGTGAGTTTTAAGGCGGAGGCGGATGTGGGCGCGGCGGAGAGAGTGGAGATGGTGGAGGTTGATGAGGATGGGTATTCGGTGTATTGCAAGAGAGGGAGGAGGGTTTCAATGGAGGATCGGTACTCCGCTGCTGTTGGTCTTGGCGATGATTCGAGACAGGCATTCTTTGGTGTGTTTGATGGGCACGGAGGGGCCAAAGCAGCTGAATTTGCAGCCAAGAACTTGAATAAAAACATTGCGGATCGTCTGAGGGGTGGAAGTGAAGAGGAAATCGTGGAAGCAGTCAAAGATGGTTATCTAACTACCGATGTCGAGTTTTTGAAGGAGGATGTTAGTGGTGGTGCATGCTGTGTGACTGCCTTGATCCAAAAGGGCAACCTTGTGGTGTCCAATGCCGGTGACTGTCGTGCAGTTATGAGCCGAGGAGGGGTCGCGGAGGCCCTTACATCCGATCATCGTCCTTCTAGATTAGATGAAAGAGAAAGGATTGAGACCACGGGTGGTTATGTAGATTGTTGCCGCAGTGTTTGGAGAATACAGGGGTCTCTTGCTGTTTCGAGATCAATTGGCGATAGACAGCTTAAAGAATGGGTGATTGCAGAACCAGAGACTAAAGTCTTAACGATAAACCCCGAATGCGAGTTTTTAATGTTAGCTTCTGATGGTCTTTGGGACAAGGTTACTAATCAAGAGGCAGTAGATATCGTTCGCCCTTTATGCGTTGGCGTTGATAAGCCGGAGCTCTTTTCAGCTTGTAAGAAGCTCGTTGATCTGTCAATTCGGAGAGGTTCCATGGATGATACAAGTGTGATGATAATCCAGTTAGGTCGTTTCGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

375

Amino Acids

40.47

Weight (kDa)

6.48

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	3 cut(s)	19, 207, 274
AccII	CGCG	3 cut(s)	145, 314, 716
AclWI	GGATC	3 cut(s)	405, 531, 640
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	257
AcyI	GRCGYC	2 cut(s)	164, 275
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	4 cut(s)	76, 124, 217, 709
AgsI	TTSAA	3 cut(s)	390, 508, 604
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	86, 485, 862, 938, 1024, 1034, 1045
AluI	AGCT	7 cut(s)	86, 485, 862, 938, 1024, 1034, 1045
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	5 cut(s)	183, 430, 767, 831, 884
AlwI	GGATC	3 cut(s)	405, 531, 640
AoxI	GGCC	3 cut(s)	248, 474, 720
ApeKI	GCWGC	3 cut(s)	410, 482, 494
ApoI	RAATTY	1 cut(s)	488
AspLEI	GCGC	3 cut(s)	11, 277, 314
AspS9I	GGNCC	2 cut(s)	474, 721
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	295, 692, 886
BaeGI	GKGCMC	1 cut(s)	468
BaeI	ACNNNNGTAYC	2 cut(s)	1074, 1107
BanI	GGYRCC	3 cut(s)	19, 207, 274
BanII	GRGCYC	2 cut(s)	130, 1026
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	3 cut(s)	397, 494, 506
BccI	CCATC	5 cut(s)	325, 344, 455, 566, 938
BceAI	ACGGC	3 cut(s)	28, 124, 262
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	5 cut(s)	183, 430, 767, 831, 884
BfaI	CTAG	2 cut(s)	111, 747
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	5 cut(s)	315, 411, 483, 495, 802
BlsI	GCNGC	5 cut(s)	316, 412, 484, 496, 803
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	474, 721
BmiI	GGNNCC	6 cut(s)	21, 129, 209, 276, 475, 1072
BmrFI	CCNGG	1 cut(s)	168
BoxI	GACNNNNGTC	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	168
BsaBI	GATNNNNATC	2 cut(s)	576, 1097
BsaHI	GRCGYC	2 cut(s)	164, 275
BsaI	GGTCTC	2 cut(s)	767, 831
BsaJI	CCNNGG	3 cut(s)	703, 777, 1074
BsaWI	WCCGGW	2 cut(s)	69, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 124, 217, 709
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	1102
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	2 cut(s)	576, 1097
BseDI	CCNNGG	3 cut(s)	703, 777, 1074
BseGI	GGATG	5 cut(s)	310, 355, 616, 728, 1084
BseJI	GATNNNNATC	2 cut(s)	576, 1097
BseLI	CCNNNNNNNGG	4 cut(s)	76, 124, 217, 709
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	1102
BseRI	GAGGAG	2 cut(s)	394, 720
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	3 cut(s)	397, 494, 506
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	3 cut(s)	145, 314, 716
Bsh1285I	CGRYCG	2 cut(s)	74, 149
BshFI	GGCC	3 cut(s)	250, 476, 722
BshNI	GGYRCC	3 cut(s)	19, 207, 274
BsiEI	CGRYCG	2 cut(s)	74, 149
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiSI	CCGG	5 cut(s)	70, 167, 269, 678, 1019
BslFI	GGGAC	1 cut(s)	968
BslI	CCNNNNNNNGG	4 cut(s)	76, 124, 217, 709
BsmAI	GTCTC	5 cut(s)	183, 430, 767, 831, 884
BsmFI	GGGAC	1 cut(s)	968
BsmI	GAATGC	2 cut(s)	443, 923
BsnI	GGCC	3 cut(s)	250, 476, 722
Bso31I	GGTCTC	2 cut(s)	767, 831
Bsp1286I	GDGCHC	3 cut(s)	130, 468, 1026
Bsp143I	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
Bsp19I	CCATGG	1 cut(s)	1074
Bsp68I	TCGCGA	1 cut(s)	145
BspANI	GGCC	3 cut(s)	250, 476, 722
BspCNI	CTCAG	1 cut(s)	522
BspFNI	CGCG	3 cut(s)	145, 314, 716
BspLI	GGNNCC	6 cut(s)	21, 129, 209, 276, 475, 1072
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	405, 531, 640
BspT107I	GGYRCC	3 cut(s)	19, 207, 274
BspTNI	GGTCTC	2 cut(s)	767, 831
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	1102
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	703, 777, 1074
BssMI	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
BssNI	GRCGYC	2 cut(s)	164, 275
BssT1I	CCWWGG	1 cut(s)	1074
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	3 cut(s)	233, 239, 540
BstACI	GRCGYC	2 cut(s)	164, 275
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	1 cut(s)	530
BstDSI	CCRYGG	2 cut(s)	777, 1074
BstF5I	GGATG	5 cut(s)	310, 355, 616, 728, 1084
BstFNI	CGCG	3 cut(s)	145, 314, 716
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	3 cut(s)	11, 277, 314
BstKTI	GATC	7 cut(s)	149, 400, 526, 648, 736, 845, 1054
BstMAI	GTCTC	5 cut(s)	183, 430, 767, 831, 884
BstMBI	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
BstMCI	CGRYCG	2 cut(s)	74, 149
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 482, 491, 999
BstNSI	RCATGY	1 cut(s)	630
BstPAI	GACNNNNGTC	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	3 cut(s)	145, 314, 716
BstV1I	GCAGC	3 cut(s)	397, 494, 506
BsuRI	GGCC	3 cut(s)	250, 476, 722
BtgI	CCRYGG	2 cut(s)	777, 1074
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	5 cut(s)	310, 355, 616, 728, 1084
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	811
BtuMI	TCGCGA	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	628
CfoI	GCGC	3 cut(s)	11, 277, 314
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	2 cut(s)	474, 721
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	3 cut(s)	122, 627, 1075
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	530
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	7 cut(s)	148, 399, 525, 647, 735, 844, 1053
DpnII	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
Eam1104I	CTCTTC	3 cut(s)	233, 239, 540
EarI	CTCTTC	3 cut(s)	233, 239, 540
EciI	GGCGGA	4 cut(s)	120, 311, 317, 332
Ecl136II	GAGCTC	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	1074
Eco24I	GRGCYC	2 cut(s)	130, 1026
Eco31I	GGTCTC	2 cut(s)	767, 831
Eco32I	GATATC	1 cut(s)	985
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	1024
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	1074
EcoT38I	GRGCYC	2 cut(s)	130, 1026
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	1074
FaeI	CATG	3 cut(s)	125, 630, 1078
FaiI	YATR	7 cut(s)	123, 628, 698, 789, 1000, 1076, 1123
FaqI	GGGAC	1 cut(s)	968
FatI	CATG	3 cut(s)	121, 626, 1074
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	5 cut(s)	315, 411, 483, 495, 802
FokI	GGATG	5 cut(s)	317, 362, 623, 715, 1091
FriOI	GRGCYC	2 cut(s)	130, 1026
Fsp4HI	GCNGC	5 cut(s)	315, 411, 483, 495, 802
FspBI	CTAG	2 cut(s)	111, 747
GlaI	GCGC	3 cut(s)	10, 276, 313
GluI	GCNGC	5 cut(s)	315, 411, 483, 495, 802
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	250, 476, 722
HapII	CCGG	5 cut(s)	70, 167, 269, 678, 1019
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	3 cut(s)	11, 277, 314
Hin1I	GRCGYC	2 cut(s)	164, 275
Hin1II	CATG	3 cut(s)	125, 630, 1078
Hin6I	GCGC	3 cut(s)	9, 275, 312
HinP1I	GCGC	3 cut(s)	9, 275, 312
HinfI	GANTC	3 cut(s)	114, 176, 431
HpaII	CCGG	5 cut(s)	70, 167, 269, 678, 1019
HphI	GGTGA	3 cut(s)	295, 692, 886
Hpy188I	TCNGA	6 cut(s)	189, 237, 531, 733, 943, 1065
Hpy188III	TCNNGA	5 cut(s)	144, 435, 747, 840, 971
Hpy99I	CGWCG	8 cut(s)	49, 79, 97, 100, 145, 154, 166, 283
HpyAV	CCTTC	3 cut(s)	211, 598, 753
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4V	TGCA	5 cut(s)	369, 494, 626, 692, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 482, 491, 999
HpyF3I	CTNAG	1 cut(s)	530
Hsp92I	GRCGYC	2 cut(s)	164, 275
Hsp92II	CATG	3 cut(s)	125, 630, 1078
HspAI	GCGC	3 cut(s)	9, 275, 312
KasI	GGCGCC	1 cut(s)	274
Kzo9I	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
LmnI	GCTCC	2 cut(s)	133, 1021
Lsp1109I	GCAGC	3 cut(s)	397, 494, 506
MaeI	CTAG	2 cut(s)	111, 747
MaeIII	GTNAC	3 cut(s)	634, 680, 961
MalI	GATC	7 cut(s)	148, 399, 525, 647, 735, 844, 1053
MboI	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
MboII	GAAGA	5 cut(s)	96, 226, 250, 256, 557
MfeI	CAATTG	1 cut(s)	846
MhlI	GDGCHC	3 cut(s)	130, 468, 1026
MluCI	AATT	4 cut(s)	4, 488, 846, 1059
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	123, 185
MseI	TTAA	4 cut(s)	291, 864, 902, 929
MspA1I	CMGCKG	2 cut(s)	410, 485
MspI	CCGG	5 cut(s)	70, 167, 269, 678, 1019
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	2 cut(s)	443, 923
MvnI	CGCG	3 cut(s)	145, 314, 716
MwoI	GCNNNNNNNGC	4 cut(s)	28, 482, 491, 999
NarI	GGCGCC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	1074
NdeII	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
NlaIII	CATG	3 cut(s)	125, 630, 1078
NlaIV	GGNNCC	6 cut(s)	21, 129, 209, 276, 475, 1072
NmeAIII	GCCGAG	1 cut(s)	728
NmuCI	GTSAC	2 cut(s)	634, 680
NruI	TCGCGA	1 cut(s)	145
NspI	RCATGY	1 cut(s)	630
PaeI	GCATGC	1 cut(s)	630
PaqCI	CACCTGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	2 cut(s)	443, 923
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	316, 412, 484, 496, 803
Ple19I	CGATCG	1 cut(s)	149
PleI	GAGTC	2 cut(s)	122, 184
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	2 cut(s)	122, 184
PshAI	GACNNNNGTC	1 cut(s)	896
Psp124BI	GAGCTC	1 cut(s)	1026
PspN4I	GGNNCC	6 cut(s)	21, 129, 209, 276, 475, 1072
PspPI	GGNCC	2 cut(s)	474, 721
PsrI	GAACNNNNNNTAC	2 cut(s)	972, 1004
PvuI	CGATCG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	485
RruI	TCGCGA	1 cut(s)	145
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	1026
SaqAI	TTAA	4 cut(s)	291, 864, 902, 929
SatI	GCNGC	5 cut(s)	315, 411, 483, 495, 802
Sau3AI	GATC	7 cut(s)	146, 397, 523, 645, 733, 842, 1051
Sau96I	GGNCC	2 cut(s)	474, 721
SchI	GAGTC	2 cut(s)	123, 185
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	3 cut(s)	130, 468, 1026
SfcI	CTRYAG	1 cut(s)	81
SfoI	GGCGCC	1 cut(s)	276
SphI	GCATGC	1 cut(s)	630
Sse9I	AATT	4 cut(s)	4, 488, 846, 1059
SspDI	GGCGCC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	111, 747
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	5 cut(s)	47, 174, 434, 594, 839
TasI	AATT	4 cut(s)	4, 488, 846, 1059
TauI	GCSGC	2 cut(s)	317, 804
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	4 cut(s)	291, 864, 902, 929
Tru9I	TTAA	4 cut(s)	291, 864, 902, 929
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	2 cut(s)	634, 680
TseI	GCWGC	3 cut(s)	410, 482, 494
Tsp45I	GTSAC	2 cut(s)	634, 680
TspDTI	ATGAA	2 cut(s)	17, 771
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	1 cut(s)	811
XapI	RAATTY	1 cut(s)	488
XbaI	TCTAGA	1 cut(s)	746
XceI	RCATGY	1 cut(s)	630
XspI	CTAG	2 cut(s)	111, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.