Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Forward (+)

12814271 .. 12816360

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTCTTGCTCCGTCGCCGTATGTAATTCTCCGGTGTTTTCACCGTCGTCTTCTCTATTCTGCAACAAATCTTCGATTCTCTCGTCACCGCAAGAATCTCTTTCTCTAACGCTTTCTCATCGCAAACCTCAGACCTCTTCTCCTTCCTCTCCATCCACCACCGTTTCTTCTCCTAAATCTCCATTTCGTCTCCGTTTCCAGAAACCTCCGTCCGGATTCGCTCCTGGTCCATTATCTTTTGGATCTGAATCTGTTTCTGCATCCTCTCCTCCGGGAGGTGTTTTAAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATTTGTAGCTCCGATTTCTTCATCGGCCGCTGTGGCTGCGACGCCGAGAGAGGAGTGTAGAGAGGTTGAGAGAGAAGGTGATGGTTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGCTATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATTTTCGGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCAGCTAAGAACTTAGATAAGAACATTGTAGAAGAAGTAGTTGGTAAGAGAGACGAGTCTGAGATAGCTGAAGCGGTGAAACATGGTTACTTGGCAACAGACGCGTCGTTTCTTAAGGAGGAAGACGTTAAGGGTGGTTCATGCTGTGTCACGGCTCTGGTTAACGAAGGGAACCTTGTTGTGTCTAACGCCGGTGACTGTCGTGCTGTTATGAGTGTAGGAGGTGTAGCTAAGGCTTTATCTTCTGATCACCGCCCGTCTAGAGACGATGAACGGAAAAGAATTGAAACCACGGGAGGATATGTTGATACGTTTCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCAAGAGGAATTGGAGATGCTCAACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATTTCGAGAATCGAGCATGACCATGAGTTTTTGATCTTGGCATCTGATGGTTTATGGGATAAAGTGAGTAACCAAGAAGCAGTAGACATTGCTCGTCCTCTCTGCTTAGGAACCGAGAAGCCATTGTTGTTAGCTGCCTGTAAGAAGCTTGTCGATTTATCTGCTTCACGAGGCTCGTCTGATGATATCAGTGTGATGTTGATCCCTTTACGCCAGTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

396

Amino Acids

42.42

Weight (kDa)

7.99

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	140 - 385	3.2e-58	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1050
AccII	CGCG	1 cut(s)	659
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	5 cut(s)	89, 360, 545, 629, 808
AclWI	GGATC	4 cut(s)	250, 468, 901, 1162
AcoI	YGGCCR	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	212, 275
AflII	CTTAAG	2 cut(s)	668, 932
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	1 cut(s)	842
AjnI	CCWGG	2 cut(s)	223, 888
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AluBI	AGCT	9 cut(s)	341, 452, 560, 623, 785, 902, 950, 1100, 1114
AluI	AGCT	9 cut(s)	341, 452, 560, 623, 785, 902, 950, 1100, 1114
Alw26I	GTCTC	4 cut(s)	194, 600, 813, 953
AlwI	GGATC	4 cut(s)	250, 468, 901, 1162
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	3 cut(s)	368, 557, 1100
ArsI	GACNNNNNNTTYG	2 cut(s)	952, 984
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	7 cut(s)	33, 78, 422, 469, 643, 761, 797
AvaII	GGWCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	1134
BbsI	GAAGAC	2 cut(s)	42, 684
BbvI	GCAGC	3 cut(s)	355, 569, 1087
BccI	CCATC	4 cut(s)	160, 407, 518, 1007
BceAI	ACGGC	2 cut(s)	2, 723
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BciT130I	CCWGG	2 cut(s)	225, 890
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	4 cut(s)	194, 600, 813, 953
BfaI	CTAG	1 cut(s)	816
BfrI	CTTAAG	2 cut(s)	668, 932
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	5 cut(s)	360, 369, 546, 558, 1101
BlsI	GCNGC	5 cut(s)	361, 370, 547, 559, 1102
Bme1390I	CCNGG	3 cut(s)	225, 273, 890
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	728, 1078
BmrFI	CCNGG	3 cut(s)	225, 273, 890
BmsI	GCATC	3 cut(s)	269, 913, 1016
BpiI	GAAGAC	2 cut(s)	42, 684
Bpu10I	CCTNAGC	2 cut(s)	786, 1072
BpuMI	CCSGG	1 cut(s)	273
BsaBI	GATNNNNATC	2 cut(s)	247, 1166
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	846, 889
BsaWI	WCCGGW	2 cut(s)	31, 212
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 843, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 275
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	1180
Bse3DI	GCAATG	1 cut(s)	1053
Bse8I	GATNNNNATC	2 cut(s)	247, 1166
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	225, 890
BseDI	CCNNGG	2 cut(s)	846, 889
BseGI	GGATG	2 cut(s)	152, 260
BseJI	GATNNNNATC	2 cut(s)	247, 1166
BseLI	CCNNNNNNNGG	2 cut(s)	212, 275
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	3 cut(s)	143, 540, 606
BseNI	ACTGG	1 cut(s)	1180
BseRI	GAGGAG	3 cut(s)	258, 398, 549
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	355, 569, 1087
Bsh1236I	CGCG	1 cut(s)	659
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	360
BsiSI	CCGG	4 cut(s)	32, 213, 272, 747
BslI	CCNNNNNNNGG	2 cut(s)	212, 275
BsmAI	GTCTC	4 cut(s)	194, 600, 813, 953
BsmBI	CGTCTC	3 cut(s)	194, 600, 813
BsnI	GGCC	1 cut(s)	359
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
BspACI	CCGC	5 cut(s)	89, 360, 545, 629, 808
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	3 cut(s)	142, 541, 607
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	2 cut(s)	728, 1078
BspPI	GGATC	4 cut(s)	250, 468, 901, 1162
BspTI	CTTAAG	2 cut(s)	668, 932
BsrDI	GCAATG	1 cut(s)	1053
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	1180
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	846, 889
BssMI	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
BssNI	GRCGYC	1 cut(s)	374
BssSI	CACGAG	1 cut(s)	1134
Bst2BI	CACGAG	1 cut(s)	1134
Bst2UI	CCWGG	2 cut(s)	225, 890
Bst4CI	ACNGT	4 cut(s)	45, 163, 755, 875
Bst6I	CTCTTC	2 cut(s)	142, 439
BstACI	GRCGYC	1 cut(s)	374
BstAFI	CTTAAG	2 cut(s)	668, 932
BstDEI	CTNAG	7 cut(s)	129, 549, 561, 568, 615, 786, 1072
BstDSI	CCRYGG	1 cut(s)	846
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	152, 260
BstFNI	CGCG	1 cut(s)	659
BstKTI	GATC	7 cut(s)	245, 463, 496, 805, 896, 1002, 1170
BstMAI	GTCTC	4 cut(s)	194, 600, 813, 953
BstMBI	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 368, 554, 656
BstNI	CCWGG	2 cut(s)	225, 890
BstSCI	CCNGG	3 cut(s)	223, 271, 888
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	3 cut(s)	355, 569, 1087
BstV2I	GAAGAC	2 cut(s)	42, 684
BstX2I	RGATCY	2 cut(s)	242, 893
BstYI	RGATCY	2 cut(s)	242, 893
BstZI	CGGCCG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	846
BtgZI	GCGATG	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	152, 260
BtsIMutI	CAGTG	1 cut(s)	1162
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	3 cut(s)	382, 648, 665
CviAII	CATG	6 cut(s)	488, 530, 638, 696, 983, 989
DdeI	CTNAG	7 cut(s)	129, 549, 561, 568, 615, 786, 1072
DpnI	GATC	7 cut(s)	244, 462, 495, 804, 895, 1001, 1169
DpnII	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	357
EagI	CGGCCG	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	142, 439
EarI	CTCTTC	2 cut(s)	142, 439
EclXI	CGGCCG	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	1153
Eco47I	GGWCC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	645
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	223, 888
EcoRV	GATATC	1 cut(s)	1153
Esp3I	CGTCTC	3 cut(s)	194, 600, 813
FaeI	CATG	6 cut(s)	491, 533, 641, 699, 986, 992
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 714, 746
FatI	CATG	6 cut(s)	487, 529, 637, 695, 982, 988
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	5 cut(s)	360, 369, 546, 558, 1101
FokI	GGATG	2 cut(s)	139, 247
Fsp4HI	GCNGC	5 cut(s)	360, 369, 546, 558, 1101
FspBI	CTAG	1 cut(s)	816
GluI	GCNGC	5 cut(s)	360, 369, 546, 558, 1101
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	4 cut(s)	32, 213, 272, 747
HgaI	GACGC	3 cut(s)	382, 648, 665
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	6 cut(s)	491, 533, 641, 699, 986, 992
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	1112
HinfI	GANTC	8 cut(s)	76, 95, 216, 248, 516, 611, 885, 975
HpaI	GTTAAC	1 cut(s)	718
HpaII	CCGG	4 cut(s)	32, 213, 272, 747
HphI	GGTGA	7 cut(s)	33, 78, 422, 469, 643, 761, 797
Hpy166II	GTNNAC	3 cut(s)	500, 718, 1051
Hpy188I	TCNGA	8 cut(s)	132, 247, 345, 515, 616, 802, 1012, 1147
Hpy188III	TCNNGA	6 cut(s)	199, 213, 816, 909, 972, 1134
Hpy8I	GTNNAC	3 cut(s)	500, 718, 1051
Hpy99I	CGWCG	4 cut(s)	17, 49, 376, 664
HpyAV	CCTTC	3 cut(s)	153, 401, 716
HpyCH4III	ACNGT	4 cut(s)	45, 163, 755, 875
HpyCH4IV	ACGT	2 cut(s)	681, 866
HpyCH4V	TGCA	3 cut(s)	63, 260, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 368, 554, 656
HpyF3I	CTNAG	7 cut(s)	129, 549, 561, 568, 615, 786, 1072
HpySE526I	ACGT	2 cut(s)	681, 866
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	6 cut(s)	491, 533, 641, 699, 986, 992
Kpn2I	TCCGGA	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	802
KspAI	GTTAAC	1 cut(s)	718
Kzo9I	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
LmnI	GCTCC	3 cut(s)	14, 226, 346
Lsp1109I	GCAGC	3 cut(s)	355, 569, 1087
LweI	GCATC	3 cut(s)	269, 913, 1016
MaeI	CTAG	1 cut(s)	816
MaeII	ACGT	2 cut(s)	681, 866
MaeIII	GTNAC	5 cut(s)	84, 641, 703, 749, 1034
MalI	GATC	7 cut(s)	244, 462, 495, 804, 895, 1001, 1169
MboI	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
MflI	RGATCY	2 cut(s)	242, 893
MluCI	AATT	3 cut(s)	25, 837, 915
MluI	ACGCGT	1 cut(s)	657
MlyI	GAGTC	2 cut(s)	525, 620
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	6 cut(s)	284, 540, 669, 684, 717, 933
MslI	CAYNNNNRTG	1 cut(s)	987
MspA1I	CMGCKG	1 cut(s)	362
MspCI	CTTAAG	2 cut(s)	668, 932
MspI	CCGG	4 cut(s)	32, 213, 272, 747
MspR9I	CCNGG	3 cut(s)	225, 273, 890
MvaI	CCWGG	2 cut(s)	225, 890
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	4 cut(s)	365, 368, 554, 656
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
NlaIII	CATG	6 cut(s)	491, 533, 641, 699, 986, 992
NlaIV	GGNNCC	2 cut(s)	728, 1078
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	3 cut(s)	84, 703, 749
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	6 cut(s)	76, 95, 216, 248, 885, 975
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	361, 370, 547, 559, 1102
PleI	GAGTC	2 cut(s)	524, 619
PpsI	GAGTC	2 cut(s)	524, 619
Psp6I	CCWGG	2 cut(s)	223, 888
PspGI	CCWGG	2 cut(s)	223, 888
PspN4I	GGNNCC	2 cut(s)	728, 1078
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	2 cut(s)	242, 893
RseI	CAYNNNNRTG	1 cut(s)	987
SaqAI	TTAA	6 cut(s)	284, 540, 669, 684, 717, 933
SatI	GCNGC	5 cut(s)	360, 369, 546, 558, 1101
Sau3AI	GATC	7 cut(s)	242, 460, 493, 802, 893, 999, 1167
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	525, 620
ScrFI	CCNGG	3 cut(s)	225, 273, 890
SfaNI	GCATC	3 cut(s)	269, 913, 1016
SgrAI	CRCCGGYG	1 cut(s)	746
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	987
SmlI	CTYRAG	2 cut(s)	668, 932
SmoI	CTYRAG	2 cut(s)	668, 932
Sse9I	AATT	3 cut(s)	25, 837, 915
SsiI	CCGC	5 cut(s)	89, 360, 545, 629, 808
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	223, 271, 888
TaaI	ACNGT	4 cut(s)	45, 163, 755, 875
TaiI	ACGT	2 cut(s)	684, 869
TaqI	TCGA	4 cut(s)	74, 971, 978, 1119
TasI	AATT	3 cut(s)	25, 837, 915
TauI	GCSGC	2 cut(s)	362, 548
TfiI	GAWTC	6 cut(s)	76, 95, 216, 248, 885, 975
Tru1I	TTAA	6 cut(s)	284, 540, 669, 684, 717, 933
Tru9I	TTAA	6 cut(s)	284, 540, 669, 684, 717, 933
TscAI	CASTG	1 cut(s)	1162
TseFI	GTSAC	3 cut(s)	84, 703, 749
TseI	GCWGC	3 cut(s)	368, 557, 1100
Tsp45I	GTSAC	3 cut(s)	84, 703, 749
TspDTI	ATGAA	5 cut(s)	342, 476, 684, 840, 1174
TspGWI	ACGGA	3 cut(s)	182, 198, 844
TspRI	CASTG	1 cut(s)	1162
Vha464I	CTTAAG	2 cut(s)	668, 932
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.