Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Forward (+)

47327500 .. 47367343

Gene Structure 39844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0357200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCACCAACGCCCCACTTCAGTACCATTAGTCTGAAGCTCCTCAACGATGTAAAGCGTCCAAAGGTTCTCTTTGCTGAAGTGGGGAAGGATTTTGTGGATTTTCTTTTCACTCTTCTTTTTTTTGCCTATGGGGACTGTCACAAGGCTCCTCTCCGAATGGCATGGTTGGTGCCTTTGGCAAACTGTGTCTTACTACTGGTGGCTACTATATATCCTGCCCCGGCTGCTTCTTCCCACCGTTATGTGACTGAAGACCCTAATGAGCTCTGTCCGTCCTGCAATAGAACCATGTCTTCTGAGGCGACTTATGTTGGTCAACCAAAGGCGATCACCGAAGCAACTTCCGGCGCCGGTGTTGCAGGATATGTCAAAGGCGTTGTTACGTACATGATAATGGATGATTTGGAGGTAAAGCCTATGTTGACCATTTCAAGCAAAACCCTGCTCAACAGGTTCAATGTCAAAGATATTAGTGCCCTTGAAGAGAAGGTTGTTGAACTTAGCATGGATGAGGGGTTGAAGATGCTGAAGGCATTGTTGCAGTCAAAATCAGTTCTCACAGATGTCTTTCTCGGAAGCGAAGCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

197

Amino Acids

21.56

Weight (kDa)

5.93

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	9 - 42	7.8e-06	Protein of unknown function (DUF674)
DUF674	PF05056	88 - 194	7.2e-16	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	4, 172, 350
AcuI	CTGAAG	5 cut(s)	4, 56, 99, 273, 551
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	25, 389
AgsI	TTSAA	5 cut(s)	435, 460, 485, 500, 523
AluBI	AGCT	2 cut(s)	40, 268
AluI	AGCT	2 cut(s)	40, 268
Alw21I	GWGCWC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	481
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BanI	GGYRCC	3 cut(s)	4, 172, 350
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	261, 288
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	4 cut(s)	6, 150, 174, 352
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	261, 288
BpuMI	CCSGG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	406, 517
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	32, 141
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	214
BshNI	GGYRCC	3 cut(s)	4, 172, 350
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	224, 348, 354
BslFI	GGGAC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	270, 481
Bsp143I	GATC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	6, 150, 174, 352
BspT107I	GGYRCC	3 cut(s)	4, 172, 350
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	330
BssNI	GRCGYC	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	140, 188, 242
Bst6I	CTCTTC	2 cut(s)	120, 480
BstACI	GRCGYC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	300, 503
BstF5I	GGATG	2 cut(s)	406, 517
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 359
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	481
BstSNI	TACGTA	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	261, 288
BtsCI	GGATG	2 cut(s)	406, 517
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	353
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	24, 388
CviAII	CATG	4 cut(s)	165, 292, 391, 508
CviJI	RGCY	6 cut(s)	40, 149, 206, 227, 268, 418
CviKI_1	RGCY	6 cut(s)	40, 149, 206, 227, 268, 418
CviQI	GTAC	2 cut(s)	24, 388
DdeI	CTNAG	2 cut(s)	300, 503
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	120, 480
EarI	CTCTTC	2 cut(s)	120, 480
Ecl136II	GAGCTC	1 cut(s)	268
Eco105I	TACGTA	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	5 cut(s)	4, 56, 99, 273, 551
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
FaeI	CATG	4 cut(s)	168, 295, 394, 511
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	164, 291, 390, 507
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	413, 524
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	228
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	354
HapII	CCGG	3 cut(s)	224, 348, 354
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	168, 295, 394, 511
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	2 cut(s)	320, 426
HindII	GTYRAC	2 cut(s)	320, 426
HpaII	CCGG	3 cut(s)	224, 348, 354
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	320, 426
Hpy188I	TCNGA	4 cut(s)	36, 158, 301, 578
Hpy8I	GTNNAC	2 cut(s)	320, 426
HpyAV	CCTTC	3 cut(s)	82, 484, 526
HpyCH4III	ACNGT	3 cut(s)	140, 188, 242
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	282, 362, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 359
HpyF3I	CTNAG	2 cut(s)	300, 503
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	168, 295, 394, 511
HspAI	GCGC	1 cut(s)	351
KasI	GGCGCC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	45, 154
LpnPI	CCDG	9 cut(s)	185, 231, 237, 292, 348, 361, 367, 439, 458
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	516
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	140, 247, 382
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	6 cut(s)	107, 225, 266, 288, 497, 535
MhlI	GDGCHC	2 cut(s)	270, 481
Mly113I	GGCGCC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	53, 162, 295, 403, 508
MslI	CAYNNNNRTG	2 cut(s)	243, 395
MspI	CCGG	3 cut(s)	224, 348, 354
MspR9I	CCNGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	227, 359
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	4 cut(s)	168, 295, 394, 511
NlaIV	GGNNCC	4 cut(s)	6, 150, 174, 352
NmuCI	GTSAC	2 cut(s)	140, 247
PkrI	GCNGC	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	354
Ppu21I	YACGTR	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	270
PspN4I	GGNNCC	4 cut(s)	6, 150, 174, 352
RsaI	GTAC	2 cut(s)	25, 389
RsaNI	GTAC	2 cut(s)	24, 388
RseI	CAYNNNNRTG	2 cut(s)	243, 395
SacI	GAGCTC	1 cut(s)	270
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	270, 481
SetI	ASST	7 cut(s)	42, 69, 270, 389, 414, 458, 495
SfaNI	GCATC	1 cut(s)	516
SfoI	GGCGCC	1 cut(s)	352
SgrAI	CRCCGGYG	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	243, 395
SnaBI	TACGTA	1 cut(s)	387
SspDI	GGCGCC	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	140, 188, 242
TaiI	ACGT	1 cut(s)	389
TseFI	GTSAC	2 cut(s)	140, 247
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	140, 247
TspGWI	ACGGA	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.