FvH4_7g24650

phosphatase 2C

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
19013997 .. 19015846
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24650.t1

Sequence Viewer

Length: 1122 bp
ATGCCTTGCGCTCTAGTCGCACCAAACTCTCCGATCTTCTCGCCGTCGAAAATTCCGTCGATTTTCTGCCGGTCATCTTCTTCTTCTCCTAGGCTTCTCCATGTCCCACCCCCGACGCCGTCGTCACGGTCCAGTAACAACCCACTGTCGTCGCCGAAGGCTTTCCAGGCGAGGTTTCAGAGCCCGAGGCATGTGATTAGTAACCACACGAAGGAGCCGTCGGGTTTGGGCTCGGGTCCGGGTTTGGCGCTGAAGAGAAAGAGGCCGATGAGGATTGATATTCCGATTGCGCCGGTGAGTTTCGCCGTTGACTCGCCGAAGGCCGAGGAGAGAGTTGAGGCTGTGGAGGTTGATGAAGATGGATATTCGGTTTATTGCAAACGAGGCAAAAGAGGTCTCATGGAGGATCGCTACTCCGCCATGGTTGATTCCACACAGGCGTTGTTTGGTGTGTTTGATGGGCATGGAGGTTCAAAGGCAGCTGAATTTGCAGCCAAGAACTTGGATAAGAACATCGCGGATCGTTTGGCGAGTGGAGGAGAGGAGAAAGTGATGGAAGCAGTGAAAGAAGGTTATTTGGCCACTGATGCTGAGTTTTTGAAAGAGGATGTTAGTGGTGGTGCTTGCTGTGTGACTGCTTTGGTGCAAAAGGGTAACCTGGTGGTGTCGAATGCTGGTGATTGTCGCGCTGTGATGAGCCGAGGAGGGGTTGCTGAAGCCCTTACGTCTGATCATCATCCTTGTAGAACAGATGAAAGAGCGAGAATTGAGAGCTCGGGTGGTTATGTGGATTATTGCCACGGTGTTTGGAGAATACAAGGTTCTCTTGCAGTTTCAAGAGGAATTGGAGATCGCCAGCTAAAGCAATGGGTTATAGCAGAACCAGAGACTAAAGTTTTAAAAATCAATCCTGAATGCGAGTTCTTAATGTTAGCATCTGACGGTCTTTGGGACAAGGTTACTAATCAAGAGGCAGTTGACATAGTTCGCCCTCTATGTGTTGGAATTGATAACCCAGAGCTGTTTTCGGCTTGTAAAAAGCTGGTTGATCTGTCAATCAGTAGAGGTTCCATGGACGATACAAGCGTGATGATAATCCAATTAGGCCGTTTTGTTTCATGA

Protein Analysis

374

Amino Acids

40.22

Weight (kDa)

6.67

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 143 - 360 1.2e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
AccII CGCG 2 cut(s) 518, 687
AciI CCGC 2 cut(s) 417, 518
AclWI GGATC 2 cut(s) 414, 528
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 2 cut(s) 51, 485
AcuI CTGAAG 2 cut(s) 272, 735
AcyI GRCGYC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 211, 706
AgsI TTSAA 3 cut(s) 474, 601, 837
AjnI CCWGG 2 cut(s) 165, 657
AluBI AGCT 5 cut(s) 482, 774, 859, 1021, 1042
AluI AGCT 5 cut(s) 482, 774, 859, 1021, 1042
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 2 cut(s) 401, 881
AlwI GGATC 2 cut(s) 414, 528
Ama87I CYCGRG 3 cut(s) 184, 232, 775
AoxI GGCC 4 cut(s) 263, 321, 579, 1105
ApeKI GCWGC 2 cut(s) 479, 491
ApoI RAATTY 2 cut(s) 51, 485
ArsI GACNNNNNNTTYG 4 cut(s) 41, 73, 203, 235
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 4 cut(s) 11, 250, 292, 689
AspS9I GGNCC 2 cut(s) 129, 236
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 307, 689
AvaI CYCGRG 3 cut(s) 184, 232, 775
AvaII GGWCC 2 cut(s) 129, 236
AvrII CCTAGG 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BalI TGGCCA 1 cut(s) 581
BanII GRGCYC 3 cut(s) 185, 233, 776
Bbv12I GWGCWC 1 cut(s) 776
BbvI GCAGC 2 cut(s) 491, 503
BccI CCATC 3 cut(s) 353, 452, 547
BceAI ACGGC 5 cut(s) 28, 103, 202, 290, 1092
BciT130I CCWGG 2 cut(s) 167, 659
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 401, 881
BfaI CTAG 2 cut(s) 14, 90
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 2 cut(s) 480, 492
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 2 cut(s) 481, 493
Bme1390I CCNGG 3 cut(s) 167, 240, 659
Bme18I GGWCC 2 cut(s) 129, 236
BmeT110I CYCGRG 3 cut(s) 184, 232, 775
BmgT120I GGNCC 2 cut(s) 129, 236
BmiI GGNNCC 3 cut(s) 216, 237, 1069
BmrFI CCNGG 3 cut(s) 167, 240, 659
BmsI GCATC 2 cut(s) 577, 944
BpuMI CCSGG 1 cut(s) 240
BsaBI GATNNNNATC 2 cut(s) 735, 1094
BsaHI GRCGYC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 7 cut(s) 89, 185, 324, 420, 700, 799, 1071
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 706
Bse118I RCCGGY 2 cut(s) 69, 292
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 872
Bse8I GATNNNNATC 2 cut(s) 735, 1094
BseBI CCWGG 2 cut(s) 167, 659
BseDI CCNNGG 7 cut(s) 89, 185, 324, 420, 700, 799, 1071
BseGI GGATG 2 cut(s) 613, 736
BseJI GATNNNNATC 2 cut(s) 735, 1094
BseLI CCNNNNNNNGG 2 cut(s) 211, 706
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 4 cut(s) 341, 552, 557, 717
BseXI GCAGC 2 cut(s) 491, 503
Bsh1236I CGCG 2 cut(s) 518, 687
BshFI GGCC 4 cut(s) 265, 323, 581, 1107
BsiHKAI GWGCWC 1 cut(s) 776
BsiHKCI CYCGRG 3 cut(s) 184, 232, 775
BsiSI CCGG 3 cut(s) 70, 239, 293
BslFI GGGAC 2 cut(s) 89, 965
BslI CCNNNNNNNGG 2 cut(s) 211, 706
BsmAI GTCTC 2 cut(s) 401, 881
BsmFI GGGAC 2 cut(s) 89, 965
BsmI GAATGC 2 cut(s) 676, 920
BsnI GGCC 4 cut(s) 265, 323, 581, 1107
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 3 cut(s) 184, 232, 775
Bsp1286I GDGCHC 3 cut(s) 185, 233, 776
Bsp143I GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
Bsp19I CCATGG 2 cut(s) 420, 1071
BspACI CCGC 2 cut(s) 417, 518
BspANI GGCC 4 cut(s) 265, 323, 581, 1107
BspCNI CTCAG 1 cut(s) 583
BspFNI CGCG 2 cut(s) 518, 687
BspHI TCATGA 1 cut(s) 1118
BspLI GGNNCC 3 cut(s) 216, 237, 1069
BspPI GGATC 2 cut(s) 414, 528
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 872
BsrFI RCCGGY 2 cut(s) 69, 292
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 2 cut(s) 69, 292
BssECI CCNNGG 7 cut(s) 89, 185, 324, 420, 700, 799, 1071
BssMI GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 3 cut(s) 89, 420, 1071
Bst2UI CCWGG 2 cut(s) 167, 659
Bst4CI ACNGT 4 cut(s) 129, 147, 803, 944
Bst6I CTCTTC 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 625, 857
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 3 cut(s) 420, 799, 1071
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 2 cut(s) 613, 736
BstFNI CGCG 2 cut(s) 518, 687
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 4 cut(s) 11, 250, 292, 689
BstKTI GATC 6 cut(s) 36, 409, 523, 733, 853, 1051
BstMAI GTCTC 2 cut(s) 401, 881
BstMBI GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
BstMWI GCNNNNNNNGC 5 cut(s) 17, 167, 384, 488, 587
BstNI CCWGG 2 cut(s) 167, 659
BstNSI RCATGY 1 cut(s) 194
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 165, 238, 657
BstUI CGCG 2 cut(s) 518, 687
BstV1I GCAGC 2 cut(s) 491, 503
BstXI CCANNNNNNTGG 1 cut(s) 502
BsuRI GGCC 4 cut(s) 265, 323, 581, 1107
BtgI CCRYGG 3 cut(s) 420, 799, 1071
BtgZI GCGATG 1 cut(s) 499
BtsCI GGATG 2 cut(s) 613, 736
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 3 cut(s) 143, 567, 582
Cac8I GCNNGC 2 cut(s) 625, 857
CciI TCATGA 1 cut(s) 1118
CfoI GCGC 4 cut(s) 11, 250, 292, 689
Cfr10I RCCGGY 2 cut(s) 69, 292
Cfr13I GGNCC 2 cut(s) 129, 236
CseI GACGC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 657
CspCI CAANNNNNGTGG 2 cut(s) 788, 823
CviAII CATG 7 cut(s) 101, 191, 400, 421, 464, 1072, 1119
DdeI CTNAG 1 cut(s) 591
DpnI GATC 6 cut(s) 35, 408, 522, 732, 852, 1050
DpnII GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
DraI TTTAAA 1 cut(s) 900
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 774
Eco130I CCWWGG 3 cut(s) 89, 420, 1071
Eco24I GRGCYC 3 cut(s) 185, 233, 776
Eco31I GGTCTC 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 129, 236
Eco53kI GAGCTC 1 cut(s) 774
Eco57I CTGAAG 2 cut(s) 272, 735
Eco88I CYCGRG 3 cut(s) 184, 232, 775
Eco91I GGTNACC 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 774
EcoO65I GGTNACC 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 165, 657
EcoT14I CCWWGG 3 cut(s) 89, 420, 1071
EcoT38I GRGCYC 3 cut(s) 185, 233, 776
ErhI CCWWGG 3 cut(s) 89, 420, 1071
FaeI CATG 7 cut(s) 104, 194, 403, 424, 467, 1075, 1122
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 2 cut(s) 89, 965
FatI CATG 7 cut(s) 100, 190, 399, 420, 463, 1071, 1118
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 2 cut(s) 480, 492
FokI GGATG 2 cut(s) 620, 723
FriOI GRGCYC 3 cut(s) 185, 233, 776
Fsp4HI GCNGC 2 cut(s) 480, 492
FspBI CTAG 2 cut(s) 14, 90
GlaI GCGC 4 cut(s) 10, 249, 291, 688
GluI GCNGC 2 cut(s) 480, 492
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 4 cut(s) 265, 323, 581, 1107
HapII CCGG 3 cut(s) 70, 239, 293
HgaI GACGC 1 cut(s) 124
HhaI GCGC 4 cut(s) 11, 250, 292, 689
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 7 cut(s) 104, 194, 403, 424, 467, 1075, 1122
Hin6I GCGC 4 cut(s) 9, 248, 290, 687
HinP1I GCGC 4 cut(s) 9, 248, 290, 687
HincII GTYRAC 2 cut(s) 310, 979
HindII GTYRAC 2 cut(s) 310, 979
HinfI GANTC 2 cut(s) 311, 428
HpaII CCGG 3 cut(s) 70, 239, 293
HphI GGTGA 2 cut(s) 307, 689
Hpy166II GTNNAC 2 cut(s) 310, 979
Hpy188I TCNGA 5 cut(s) 33, 180, 285, 730, 940
Hpy188III TCNNGA 4 cut(s) 837, 911, 968, 1119
Hpy8I GTNNAC 2 cut(s) 310, 979
Hpy99I CGWCG 6 cut(s) 49, 61, 118, 124, 154, 223
HpyAV CCTTC 4 cut(s) 151, 205, 313, 563
HpyCH4III ACNGT 4 cut(s) 129, 147, 803, 944
HpyCH4IV ACGT 1 cut(s) 725
HpyCH4V TGCA 4 cut(s) 378, 491, 646, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 167, 384, 488, 587
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 1 cut(s) 725
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 7 cut(s) 104, 194, 403, 424, 467, 1075, 1122
HspAI GCGC 4 cut(s) 9, 248, 290, 687
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 2 cut(s) 491, 503
LweI GCATC 2 cut(s) 577, 944
MabI ACCWGGT 1 cut(s) 657
MaeI CTAG 2 cut(s) 14, 90
MaeII ACGT 1 cut(s) 725
MaeIII GTNAC 6 cut(s) 123, 134, 200, 631, 653, 958
MalI GATC 6 cut(s) 35, 408, 522, 732, 852, 1050
MboI GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
MboII GAAGA 6 cut(s) 28, 69, 72, 75, 265, 368
MhlI GDGCHC 3 cut(s) 185, 233, 776
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 6 cut(s) 51, 485, 765, 843, 1005, 1100
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 982
Mox20I TGGCCA 1 cut(s) 581
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 581
MseI TTAA 2 cut(s) 899, 926
Msp20I TGGCCA 1 cut(s) 581
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 3 cut(s) 70, 239, 293
MspR9I CCNGG 3 cut(s) 167, 240, 659
Mva1269I GAATGC 2 cut(s) 676, 920
MvaI CCWGG 2 cut(s) 167, 659
MvnI CGCG 2 cut(s) 518, 687
MwoI GCNNNNNNNGC 5 cut(s) 17, 167, 384, 488, 587
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 2 cut(s) 420, 1071
NdeII GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
NlaIII CATG 7 cut(s) 104, 194, 403, 424, 467, 1075, 1122
NlaIV GGNNCC 3 cut(s) 216, 237, 1069
NmeAIII GCCGAG 2 cut(s) 349, 725
NmuCI GTSAC 2 cut(s) 123, 631
NspI RCATGY 1 cut(s) 194
PagI TCATGA 1 cut(s) 1118
PcsI WCGNNNNNNNCGW 3 cut(s) 53, 215, 1083
PctI GAATGC 2 cut(s) 676, 920
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 481, 493
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 776
Psp6I CCWGG 2 cut(s) 165, 657
PspEI GGTNACC 1 cut(s) 653
PspGI CCWGG 2 cut(s) 165, 657
PspN4I GGNNCC 3 cut(s) 216, 237, 1069
PspPI GGNCC 2 cut(s) 129, 236
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 899, 926
SatI GCNGC 2 cut(s) 480, 492
Sau3AI GATC 6 cut(s) 33, 406, 520, 730, 850, 1048
Sau96I GGNCC 2 cut(s) 129, 236
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 3 cut(s) 167, 240, 659
SduI GDGCHC 3 cut(s) 185, 233, 776
SexAI ACCWGGT 1 cut(s) 657
SfaNI GCATC 2 cut(s) 577, 944
SgrAI CRCCGGYG 1 cut(s) 292
SinI GGWCC 2 cut(s) 129, 236
Sse9I AATT 6 cut(s) 51, 485, 765, 843, 1005, 1100
SsiI CCGC 2 cut(s) 417, 518
SspMI CTAG 2 cut(s) 14, 90
SstI GAGCTC 1 cut(s) 776
StyD4I CCNGG 3 cut(s) 165, 238, 657
StyI CCWWGG 3 cut(s) 89, 420, 1071
TaaI ACNGT 4 cut(s) 129, 147, 803, 944
TaiI ACGT 1 cut(s) 728
TaqI TCGA 3 cut(s) 47, 59, 668
TasI AATT 6 cut(s) 51, 485, 765, 843, 1005, 1100
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 899, 926
Tru9I TTAA 2 cut(s) 899, 926
TscAI CASTG 3 cut(s) 150, 567, 589
TseFI GTSAC 2 cut(s) 123, 631
TseI GCWGC 2 cut(s) 479, 491
Tsp45I GTSAC 2 cut(s) 123, 631
TspDTI ATGAA 3 cut(s) 369, 768, 1107
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 3 cut(s) 150, 567, 589
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 129, 236
XapI RAATTY 2 cut(s) 51, 485
XceI RCATGY 1 cut(s) 194
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 2 cut(s) 14, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.