AT1G07200

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010747
Physical Location & Seq
Reverse (-)
2208477 .. 2212718
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07200.1

Sequence Viewer

Length: 1269 bp
ATGGAGGATCTTACGGCATCGGTGACTAACCGCACAGTGAGTTTGCCTTTGAGCTGTGTTACTACAGATTTTGGGTTGGGAGTAATCTATGCATCCAAAAACCAGGAATCAAAAACAACGAGGGAGAAACCGATGCTGGTGACTCTAAACTCTTCTTTAGAACATACATATCAGAAAGATTTCAAGTCTCTCAGAGAAATACTCTCTCGTAAAGTTGCCTGGCAGACCGAAGCTGTAAATGCCATAAGCCAAATTATCTGCGGATGCAAAACCGACTCCACGCGAAGAAACCAAGCAAGCGGAATTTGGCTGGCTCTTCTTGGACCCGATAAAGTGGGGAAGAAGAAAGTGGCGATGACTCTTTCTGAAGTCTTCTTTGGTGGTAAAGTCAATTACATATGTGTAGATTTTGGGGCAGAGCATTGTTCCCTTGATGACAAATTCAGAGGCAAAACAGTGGTGGATTACGTAACCGGTGAGTTATCTAGGAAACCACACTCTGTTGTTTTACTCGAAAACGTGGAAAAAGCTGAGTTCCCGGATCAGATGAGATTGTCTGAAGCTGTGAGTACGGGGAAAATCCGTGATTTGCATGGAAGAGTGATTAGTATGAAAAATGTGATTGTTGTTGTGACGTCTGGGATTGCCAAGGATAATGCCACTGACCATGTTATTAAACCTGTGAAGTTTCCTGAGGAGCAAGTTCTCAGCGCGAGAAGCTGGAAACTGCAGATAAAGCTAGGAGATGCTACTAAATTTGGGGTAAATAAGAGAAAATATGAGCTAGAAACAGCGCAACGTGCAGTGAAGGTGCAACGTTCATATCTGGATCTGAATCTTCCAGTGAATGAAACAGAATTTAGCCCTGATCATGAGGCAGAGGACAGGGACGCTTGGTTCGATGAATTCATTGAAAAAGTAGATGGAAAAGTGACGTTCAAACCGGTTGATTTCGATGAGTTAGCCAAGAACATTCAAGAGAAGATTGGTTCACATTTTGAGCGGTGCTTTGGATCCGAAACACATCTAGAACTTGATAAAGAAGTGATCCTTCAGATTCTGGCGGCTTCATGGTCATCATTATCATCGGGCGAAGAAGAAGGGAGAACAATAGTTGATCAGTGGATGCAAACAGTTCTTGCTCGAAGCTTTGCTGAAGCAAAACAGAAGTACGGTTCGAATCCCATGTTGGGCGTGAAGCTGGTTGCTTCTTCTAGCGGCTTAGCTTCCGGAGTAGAATTGCCGGCGAAGGTGGATGTGATATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347
KEGG Pathways
Metabolic & Signaling
ko04213 map04213
Pfam Domains
Protein Families
AAA_2 Clp_N

Protein Analysis

422

Amino Acids

47.04

Weight (kDa)

6.3

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_2 PF07724 105 - 223 7.9e-09 AAA domain (Cdc48 subfamily)
AAA_lid_SMAX1 PF26587 317 - 405 7.6e-23 SMAX1-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07200 AT1G07200 AT2G29970
fragaria_vesca FvH4_3g38740
malus_domestica MD03G1068500.v1.1 MD11G1072900.v1.1
prunus_persica Prupe.6G056400_v2.0.a1
pyrus_communis pycom03g05500 pycom11g06060
rosa_chinensis RchiOBHm_Chr5g0069891
rosa_laevigata RLG00000036105
rosa_multiflora Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001
rosa_roxburghii Rroxscaffold_1G00011170
rosa_rugosa Rorug05G0400500
rosa_samantha Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300
rosa_wichuraiana Rw5G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 1003
AccII CGCG 2 cut(s) 283, 713
AccIII TCCGGA 1 cut(s) 1229
AciI CCGC 6 cut(s) 31, 261, 300, 1003, 1064, 1218
AclI AACGTT 1 cut(s) 817
AclWI GGATC 6 cut(s) 15, 549, 837, 1008, 1021, 1042
AcsI RAATTY 5 cut(s) 303, 440, 755, 857, 905
AcuI CTGAAG 4 cut(s) 387, 579, 1037, 1176
AcyI GRCGYC 1 cut(s) 635
AfaI GTAC 2 cut(s) 571, 1172
AfiI CCNNNNNNNGG 1 cut(s) 1190
AgeI ACCGGT 2 cut(s) 473, 943
AgsI TTSAA 4 cut(s) 184, 914, 940, 977
AjnI CCWGG 2 cut(s) 102, 218
AjuI GAANNNNNNNTTGG 4 cut(s) 360, 392, 1172, 1204
AloI GAACNNNNNNTCC 2 cut(s) 881, 913
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 6 cut(s) 15, 549, 837, 1008, 1021, 1042
AlwNI CAGNNNCTG 1 cut(s) 1060
Aor13HI TCCGGA 1 cut(s) 1229
ApoI RAATTY 5 cut(s) 303, 440, 755, 857, 905
ArsI GACNNNNNNTTYG 2 cut(s) 881, 913
AsiGI ACCGGT 2 cut(s) 473, 943
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 2 cut(s) 713, 796
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 3 cut(s) 34, 151, 488
AsuII TTCGAA 1 cut(s) 1178
AvaII GGWCC 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 693
BamHI GGATCC 1 cut(s) 1013
BbsI GAAGAC 1 cut(s) 364
BccI CCATC 1 cut(s) 917
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 104, 220
BclI TGATCA 2 cut(s) 868, 1117
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 5 cut(s) 486, 740, 785, 1028, 1215
BfmI CTRYAG 2 cut(s) 63, 728
BisI GCNGC 2 cut(s) 1065, 1219
BlpI GCTNAGC 1 cut(s) 1222
BlsI GCNGC 2 cut(s) 1066, 1220
Bme1390I CCNGG 3 cut(s) 104, 220, 539
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 325, 1015
BmrFI CCNGG 3 cut(s) 104, 220, 539
BmsI GCATC 6 cut(s) 26, 101, 123, 254, 736, 1116
BpiI GAAGAC 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 186, 218
Bpu1102I GCTNAGC 1 cut(s) 1222
Bpu14I TTCGAA 1 cut(s) 1178
BpuMI CCSGG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 635
BsaJI CCNNGG 1 cut(s) 648
BsaWI WCCGGW 3 cut(s) 473, 943, 1229
Bsc4I CCNNNNNNNGG 1 cut(s) 1190
Bse118I RCCGGY 3 cut(s) 473, 943, 1243
Bse1I ACTGG 1 cut(s) 842
Bse21I CCTNAGG 1 cut(s) 693
Bse8I GATNNNNATC 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 1229
BseBI CCWGG 2 cut(s) 104, 220
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 4 cut(s) 92, 269, 1131, 1261
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 1 cut(s) 1190
BseMII CTCAG 4 cut(s) 205, 522, 684, 721
BseNI ACTGG 1 cut(s) 842
BseRI GAGGAG 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 2 cut(s) 283, 713
BshTI ACCGGT 2 cut(s) 473, 943
BsiSI CCGG 5 cut(s) 474, 539, 944, 1230, 1244
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 1 cut(s) 1190
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 902
Bsp119I TTCGAA 1 cut(s) 1178
Bsp13I TCCGGA 1 cut(s) 1229
Bsp143I GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
Bsp1720I GCTNAGC 1 cut(s) 1222
BspACI CCGC 6 cut(s) 31, 261, 300, 1003, 1064, 1218
BspCNI CTCAG 4 cut(s) 204, 523, 685, 720
BspEI TCCGGA 1 cut(s) 1229
BspFNI CGCG 2 cut(s) 283, 713
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 2 cut(s) 325, 1015
BspMAI CTGCAG 1 cut(s) 732
BspPI GGATC 6 cut(s) 15, 549, 837, 1008, 1021, 1042
BspQI GCTCTTC 1 cut(s) 321
BspT104I TTCGAA 1 cut(s) 1178
BsrBI CCGCTC 1 cut(s) 1003
BsrFI RCCGGY 3 cut(s) 473, 943, 1243
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 3 cut(s) 473, 943, 1243
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
BssNI GRCGYC 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 648
Bst2UI CCWGG 2 cut(s) 104, 220
Bst4CI ACNGT 4 cut(s) 37, 457, 1135, 1175
Bst6I CTCTTC 3 cut(s) 157, 321, 592
BstACI GRCGYC 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 469
BstBI TTCGAA 1 cut(s) 1178
BstC8I GCNNGC 3 cut(s) 298, 312, 1245
BstDEI CTNAG 5 cut(s) 191, 531, 693, 707, 1222
BstF5I GGATG 4 cut(s) 92, 269, 1131, 1261
BstFNI CGCG 2 cut(s) 283, 713
BstHHI GCGC 2 cut(s) 713, 796
BstKTI GATC 7 cut(s) 10, 544, 832, 871, 1016, 1050, 1120
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
BstMWI GCNNNNNNNGC 4 cut(s) 239, 717, 736, 800
BstNI CCWGG 2 cut(s) 104, 220
BstSCI CCNGG 3 cut(s) 102, 218, 537
BstSFI CTRYAG 2 cut(s) 63, 728
BstSNI TACGTA 1 cut(s) 469
BstUI CGCG 2 cut(s) 283, 713
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 3 cut(s) 7, 829, 1013
BstYI RGATCY 3 cut(s) 7, 829, 1013
Bsu36I CCTNAGG 1 cut(s) 693
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 4 cut(s) 92, 269, 1131, 1261
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 6 cut(s) 42, 462, 660, 810, 849, 1127
Cac8I GCNNGC 3 cut(s) 298, 312, 1245
CaiI CAGNNNCTG 1 cut(s) 1060
CciI TCATGA 1 cut(s) 871
CfoI GCGC 2 cut(s) 713, 796
Cfr10I RCCGGY 3 cut(s) 473, 943, 1243
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 899
Csp6I GTAC 2 cut(s) 570, 1171
CspAI ACCGGT 2 cut(s) 473, 943
CviAII CATG 5 cut(s) 593, 668, 872, 1071, 1186
CviQI GTAC 2 cut(s) 570, 1171
DdeI CTNAG 5 cut(s) 191, 531, 693, 707, 1222
DpnI GATC 7 cut(s) 9, 543, 831, 870, 1015, 1049, 1119
DpnII GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
Eam1104I CTCTTC 3 cut(s) 157, 321, 592
EarI CTCTTC 3 cut(s) 157, 321, 592
Eco105I TACGTA 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 4 cut(s) 387, 579, 1037, 1176
Eco81I CCTNAGG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 2 cut(s) 102, 218
EcoT14I CCWWGG 1 cut(s) 648
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 5 cut(s) 596, 671, 875, 1074, 1189
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 902
FatI CATG 5 cut(s) 592, 667, 871, 1070, 1185
FauNDI CATATG 1 cut(s) 398
FbaI TGATCA 2 cut(s) 868, 1117
Fnu4HI GCNGC 2 cut(s) 1065, 1219
FokI GGATG 3 cut(s) 79, 276, 1138
Fsp4HI GCNGC 2 cut(s) 1065, 1219
FspBI CTAG 5 cut(s) 486, 740, 785, 1028, 1215
GlaI GCGC 2 cut(s) 712, 795
GluI GCNGC 2 cut(s) 1065, 1219
HapII CCGG 5 cut(s) 474, 539, 944, 1230, 1244
HgaI GACGC 1 cut(s) 899
HhaI GCGC 2 cut(s) 713, 796
Hin1I GRCGYC 1 cut(s) 635
Hin1II CATG 5 cut(s) 596, 671, 875, 1074, 1189
Hin6I GCGC 2 cut(s) 711, 794
HinP1I GCGC 2 cut(s) 711, 794
HindIII AAGCTT 1 cut(s) 1147
HinfI GANTC 7 cut(s) 107, 142, 275, 358, 835, 1057, 1180
HpaII CCGG 5 cut(s) 474, 539, 944, 1230, 1244
HphI GGTGA 3 cut(s) 34, 151, 488
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 9 cut(s) 174, 194, 367, 446, 546, 559, 834, 1018, 1056
Hpy188III TCNNGA 6 cut(s) 692, 827, 872, 977, 1028, 1230
Hpy8I GTNNAC 1 cut(s) 992
HpyAV CCTTC 4 cut(s) 802, 1061, 1094, 1243
HpyCH4III ACNGT 4 cut(s) 37, 457, 1135, 1175
HpyCH4IV ACGT 6 cut(s) 468, 519, 635, 799, 817, 935
HpyCH4V TGCA 7 cut(s) 92, 267, 592, 730, 803, 814, 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 717, 736, 800
HpyF3I CTNAG 5 cut(s) 191, 531, 693, 707, 1222
HpySE526I ACGT 6 cut(s) 468, 519, 635, 799, 817, 935
Hsp92I GRCGYC 1 cut(s) 635
Hsp92II CATG 5 cut(s) 596, 671, 875, 1074, 1189
HspAI GCGC 2 cut(s) 711, 794
Kpn2I TCCGGA 1 cut(s) 1229
KroI GCCGGC 1 cut(s) 1243
KroNI GCCGGC 1 cut(s) 1245
Ksp22I TGATCA 2 cut(s) 868, 1117
Kzo9I GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 697
LweI GCATC 6 cut(s) 26, 101, 123, 254, 736, 1116
MaeI CTAG 5 cut(s) 486, 740, 785, 1028, 1215
MaeII ACGT 6 cut(s) 468, 519, 635, 799, 817, 935
MaeIII GTNAC 6 cut(s) 22, 58, 139, 469, 631, 931
MalI GATC 7 cut(s) 9, 543, 831, 870, 1015, 1049, 1119
MbiI CCGCTC 1 cut(s) 1003
MboI GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
MflI RGATCY 3 cut(s) 7, 829, 1013
MluCI AATT 8 cut(s) 252, 303, 391, 440, 755, 857, 905, 1238
MlyI GAGTC 3 cut(s) 136, 269, 352
MnlI CCTC 5 cut(s) 114, 440, 688, 868, 874
Mph1103I ATGCAT 1 cut(s) 94
MroI TCCGGA 1 cut(s) 1229
MroNI GCCGGC 1 cut(s) 1243
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 675
MspI CCGG 5 cut(s) 474, 539, 944, 1230, 1244
MspR9I CCNGG 3 cut(s) 104, 220, 539
MvaI CCWGG 2 cut(s) 104, 220
MvnI CGCG 2 cut(s) 283, 713
MwoI GCNNNNNNNGC 4 cut(s) 239, 717, 736, 800
NaeI GCCGGC 1 cut(s) 1245
NciI CCSGG 1 cut(s) 539
NdeI CATATG 1 cut(s) 398
NdeII GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
NgoMIV GCCGGC 1 cut(s) 1243
NlaIII CATG 5 cut(s) 596, 671, 875, 1074, 1189
NlaIV GGNNCC 2 cut(s) 325, 1015
NmuCI GTSAC 4 cut(s) 22, 139, 631, 931
NsiI ATGCAT 1 cut(s) 94
NspV TTCGAA 1 cut(s) 1178
PagI TCATGA 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PdiI GCCGGC 1 cut(s) 1245
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 107, 835, 1057, 1180
PfoI TCCNGGA 1 cut(s) 537
PinAI ACCGGT 2 cut(s) 473, 943
PkrI GCNGC 2 cut(s) 1066, 1220
PleI GAGTC 3 cut(s) 136, 269, 352
PpsI GAGTC 3 cut(s) 136, 269, 352
Ppu21I YACGTR 1 cut(s) 469
Psp1406I AACGTT 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 102, 218
PspGI CCWGG 2 cut(s) 102, 218
PspN4I GGNNCC 2 cut(s) 325, 1015
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 1060
PsuI RGATCY 3 cut(s) 7, 829, 1013
RsaI GTAC 2 cut(s) 571, 1172
RsaNI GTAC 2 cut(s) 570, 1171
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 2 cut(s) 1065, 1219
Sau3AI GATC 7 cut(s) 7, 541, 829, 868, 1013, 1047, 1117
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 3 cut(s) 136, 269, 352
ScrFI CCNGG 3 cut(s) 104, 220, 539
SfaNI GCATC 6 cut(s) 26, 101, 123, 254, 736, 1116
SfcI CTRYAG 2 cut(s) 63, 728
SfuI TTCGAA 1 cut(s) 1178
SinI GGWCC 1 cut(s) 323
SnaBI TACGTA 1 cut(s) 469
Sse9I AATT 8 cut(s) 252, 303, 391, 440, 755, 857, 905, 1238
SsiI CCGC 6 cut(s) 31, 261, 300, 1003, 1064, 1218
SspMI CTAG 5 cut(s) 486, 740, 785, 1028, 1215
StyD4I CCNGG 3 cut(s) 102, 218, 537
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 4 cut(s) 37, 457, 1135, 1175
TaiI ACGT 6 cut(s) 471, 522, 638, 802, 820, 938
TaqI TCGA 5 cut(s) 513, 900, 954, 1144, 1178
TaqII GACCGA 1 cut(s) 242
TasI AATT 8 cut(s) 252, 303, 391, 440, 755, 857, 905, 1238
TauI GCSGC 2 cut(s) 1067, 1221
TfiI GAWTC 4 cut(s) 107, 835, 1057, 1180
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 6 cut(s) 42, 462, 667, 810, 849, 1127
TseFI GTSAC 4 cut(s) 22, 139, 631, 931
Tsp45I GTSAC 4 cut(s) 22, 139, 631, 931
TspDTI ATGAA 6 cut(s) 626, 810, 864, 898, 918, 1059
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 6 cut(s) 42, 462, 667, 810, 849, 1127
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 5 cut(s) 303, 440, 755, 857, 905
XbaI TCTAGA 1 cut(s) 1027
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 5 cut(s) 486, 740, 785, 1028, 1215
ZraI GACGTC 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.