transcription, DNA-templated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07200 AT1G07200 AT2G29970 |
| fragaria_vesca | FvH4_3g38740 |
| malus_domestica | MD03G1068500.v1.1 MD11G1072900.v1.1 |
| prunus_persica | Prupe.6G056400_v2.0.a1 |
| pyrus_communis | pycom03g05500 pycom11g06060 |
| rosa_chinensis | RchiOBHm_Chr5g0069891 |
| rosa_laevigata | RLG00000036105 |
| rosa_multiflora | Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00011170 |
| rosa_rugosa | Rorug05G0400500 |
| rosa_samantha | Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300 |
| rosa_wichuraiana | Rw5G042720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 68 |
| AatII | GACGTC | 5 cut(s) | 110, 361, 419, 551, 1613 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2433 |
| AccBSI | CCGCTC | 1 cut(s) | 1442 |
| AccI | GTMKAC | 1 cut(s) | 2612 |
| AccII | CGCG | 6 cut(s) | 52, 80, 82, 177, 219, 221 |
| AclI | AACGTT | 1 cut(s) | 758 |
| AclWI | GGATC | 6 cut(s) | 293, 868, 1177, 1406, 1713, 2785 |
| AcuI | CTGAAG | 4 cut(s) | 1523, 2100, 2426, 2976 |
| AcyI | GRCGYC | 5 cut(s) | 107, 358, 416, 548, 1610 |
| AfaI | GTAC | 1 cut(s) | 197 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1187, 2433 |
| AflII | CTTAAG | 2 cut(s) | 2540, 2795 |
| AhlI | ACTAGT | 1 cut(s) | 724 |
| AjiI | CACGTC | 4 cut(s) | 206, 529, 573, 2201 |
| AjnI | CCWGG | 2 cut(s) | 1663, 1979 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1161, 1193 |
| Alw21I | GWGCWC | 1 cut(s) | 231 |
| AlwI | GGATC | 6 cut(s) | 293, 868, 1177, 1406, 1713, 2785 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2854 |
| Ama87I | CYCGRG | 1 cut(s) | 625 |
| AoxI | GGCC | 1 cut(s) | 2238 |
| ApeKI | GCWGC | 3 cut(s) | 2807, 2854, 2909 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 406, 438 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1042, 1620, 2415 |
| AspLEI | GCGC | 5 cut(s) | 52, 82, 179, 221, 223 |
| AspS9I | GGNCC | 3 cut(s) | 2036, 2483, 2756 |
| AsuC2I | CCSGG | 2 cut(s) | 499, 2050 |
| AsuHPI | GGTGA | 8 cut(s) | 503, 556, 668, 698, 1004, 1285, 1846, 2533 |
| AsuII | TTCGAA | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 625 |
| AvaII | GGWCC | 3 cut(s) | 2036, 2483, 2756 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1791, 1824, 2966, 2999 |
| BanII | GRGCYC | 2 cut(s) | 231, 2539 |
| BauI | CACGAG | 1 cut(s) | 1379 |
| BbsI | GAAGAC | 3 cut(s) | 2077, 2503, 2607 |
| Bbv12I | GWGCWC | 1 cut(s) | 231 |
| BbvI | GCAGC | 3 cut(s) | 2794, 2841, 2896 |
| BccI | CCATC | 7 cut(s) | 851, 904, 1159, 1488, 1624, 2660, 2811 |
| BceAI | ACGGC | 2 cut(s) | 36, 104 |
| BciT130I | CCWGG | 2 cut(s) | 1665, 1981 |
| BciVI | GTATCC | 2 cut(s) | 1958, 2967 |
| BclI | TGATCA | 4 cut(s) | 1327, 1836, 2251, 2845 |
| BcnI | CCSGG | 2 cut(s) | 499, 2050 |
| BcuI | ACTAGT | 1 cut(s) | 724 |
| BfmI | CTRYAG | 3 cut(s) | 673, 1445, 2967 |
| BfrI | CTTAAG | 2 cut(s) | 2540, 2795 |
| BfuI | GTATCC | 2 cut(s) | 1958, 2967 |
| BglII | AGATCT | 2 cut(s) | 338, 578 |
| BisI | GCNGC | 5 cut(s) | 180, 327, 2808, 2855, 2910 |
| BlsI | GCNGC | 5 cut(s) | 181, 328, 2809, 2856, 2911 |
| Bme1390I | CCNGG | 4 cut(s) | 499, 1665, 1981, 2050 |
| Bme18I | GGWCC | 3 cut(s) | 2036, 2483, 2756 |
| BmeT110I | CYCGRG | 1 cut(s) | 625 |
| BmgBI | CACGTC | 4 cut(s) | 206, 529, 573, 2201 |
| BmgT120I | GGNCC | 3 cut(s) | 2036, 2483, 2756 |
| BmiI | GGNNCC | 1 cut(s) | 2485 |
| BmrFI | CCNGG | 4 cut(s) | 499, 1665, 1981, 2050 |
| BmsI | GCATC | 1 cut(s) | 1787 |
| BoxI | GACNNNNGTC | 2 cut(s) | 627, 1467 |
| BpiI | GAAGAC | 3 cut(s) | 2077, 2503, 2607 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1694, 1726 |
| BpmI | CTGGAG | 1 cut(s) | 194 |
| Bpu14I | TTCGAA | 1 cut(s) | 266 |
| BpuEI | CTTGAG | 4 cut(s) | 245, 327, 1696, 2663 |
| BpuMI | CCSGG | 2 cut(s) | 499, 2050 |
| Bsa29I | ATCGAT | 2 cut(s) | 149, 1323 |
| BsaAI | YACGTR | 1 cut(s) | 1999 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1104, 2568, 2821 |
| BsaHI | GRCGYC | 5 cut(s) | 107, 358, 416, 548, 1610 |
| BsaI | GGTCTC | 1 cut(s) | 313 |
| BsaJI | CCNNGG | 5 cut(s) | 18, 391, 922, 1253, 2406 |
| BsaWI | WCCGGW | 3 cut(s) | 304, 541, 613 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 56, 86 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1187, 2433 |
| Bse1I | ACTGG | 7 cut(s) | 11, 211, 1805, 2287, 2367, 2393, 2438 |
| Bse3DI | GCAATG | 1 cut(s) | 2178 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1104, 2568, 2821 |
| BseBI | CCWGG | 2 cut(s) | 1665, 1981 |
| BseCI | ATCGAT | 2 cut(s) | 149, 1323 |
| BseDI | CCNNGG | 5 cut(s) | 18, 391, 922, 1253, 2406 |
| BseGI | GGATG | 6 cut(s) | 361, 535, 915, 1199, 1635, 2587 |
| BseJI | GATNNNNATC | 3 cut(s) | 1104, 2568, 2821 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1187, 2433 |
| BseMI | GCAATG | 1 cut(s) | 2178 |
| BseMII | CTCAG | 6 cut(s) | 1519, 1578, 1692, 1906, 2259, 2561 |
| BseNI | ACTGG | 7 cut(s) | 11, 211, 1805, 2287, 2367, 2393, 2438 |
| BsePI | GCGCGC | 1 cut(s) | 219 |
| BseRI | GAGGAG | 3 cut(s) | 582, 2519, 2975 |
| BseXI | GCAGC | 3 cut(s) | 2794, 2841, 2896 |
| Bsh1236I | CGCG | 6 cut(s) | 52, 80, 82, 177, 219, 221 |
| BshFI | GGCC | 1 cut(s) | 2240 |
| BshVI | ATCGAT | 2 cut(s) | 149, 1323 |
| BsiHKAI | GWGCWC | 1 cut(s) | 231 |
| BsiHKCI | CYCGRG | 1 cut(s) | 625 |
| BsiSI | CCGG | 8 cut(s) | 305, 498, 542, 614, 1490, 2049, 2951, 2987 |
| BslFI | GGGAC | 2 cut(s) | 1472, 2469 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1187, 2433 |
| BsmBI | CGTCTC | 4 cut(s) | 212, 555, 1049, 2191 |
| BsmFI | GGGAC | 2 cut(s) | 1472, 2469 |
| BsmI | GAATGC | 1 cut(s) | 1945 |
| BsnI | GGCC | 1 cut(s) | 2240 |
| Bso31I | GGTCTC | 1 cut(s) | 313 |
| BsoBI | CYCGRG | 1 cut(s) | 625 |
| Bsp119I | TTCGAA | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 2 cut(s) | 231, 2539 |
| Bsp19I | CCATGG | 1 cut(s) | 391 |
| BspANI | GGCC | 1 cut(s) | 2240 |
| BspCNI | CTCAG | 6 cut(s) | 1518, 1579, 1693, 1905, 2260, 2560 |
| BspDI | ATCGAT | 2 cut(s) | 149, 1323 |
| BspFNI | CGCG | 6 cut(s) | 52, 80, 82, 177, 219, 221 |
| BspLI | GGNNCC | 1 cut(s) | 2485 |
| BspMAI | CTGCAG | 1 cut(s) | 1449 |
| BspPI | GGATC | 6 cut(s) | 293, 868, 1177, 1406, 1713, 2785 |
| BspQI | GCTCTTC | 1 cut(s) | 2034 |
| BspT104I | TTCGAA | 1 cut(s) | 266 |
| BspTI | CTTAAG | 2 cut(s) | 2540, 2795 |
| BspTNI | GGTCTC | 1 cut(s) | 313 |
| BsrBI | CCGCTC | 1 cut(s) | 1442 |
| BsrDI | GCAATG | 1 cut(s) | 2178 |
| BsrI | ACTGG | 7 cut(s) | 11, 211, 1805, 2287, 2367, 2393, 2438 |
| BssECI | CCNNGG | 5 cut(s) | 18, 391, 922, 1253, 2406 |
| BssHII | GCGCGC | 1 cut(s) | 219 |
| BssNAI | GTATAC | 1 cut(s) | 2613 |
| BssNI | GRCGYC | 5 cut(s) | 107, 358, 416, 548, 1610 |
| BssSI | CACGAG | 1 cut(s) | 1379 |
| BssT1I | CCWWGG | 2 cut(s) | 391, 922 |
| Bst1107I | GTATAC | 1 cut(s) | 2613 |
| Bst2BI | CACGAG | 1 cut(s) | 1379 |
| Bst2UI | CCWGG | 2 cut(s) | 1665, 1981 |
| Bst6I | CTCTTC | 5 cut(s) | 205, 565, 2034, 2826, 2952 |
| BstACI | GRCGYC | 5 cut(s) | 107, 358, 416, 548, 1610 |
| BstAFI | CTTAAG | 2 cut(s) | 2540, 2795 |
| BstBAI | YACGTR | 1 cut(s) | 1999 |
| BstBI | TTCGAA | 1 cut(s) | 266 |
| BstC8I | GCNNGC | 5 cut(s) | 54, 221, 993, 2025, 2185 |
| BstDEI | CTNAG | 7 cut(s) | 1305, 1505, 1587, 1701, 1892, 2268, 2547 |
| BstDSI | CCRYGG | 2 cut(s) | 18, 391 |
| BstF5I | GGATG | 6 cut(s) | 361, 535, 915, 1199, 1635, 2587 |
| BstFNI | CGCG | 6 cut(s) | 52, 80, 82, 177, 219, 221 |
| BstHHI | GCGC | 5 cut(s) | 52, 82, 179, 221, 223 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1534, 1651, 1940, 2201 |
| BstNI | CCWGG | 2 cut(s) | 1665, 1981 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 627, 1467 |
| BstSCI | CCNGG | 4 cut(s) | 497, 1663, 1979, 2048 |
| BstSFI | CTRYAG | 3 cut(s) | 673, 1445, 2967 |
| BstUI | CGCG | 6 cut(s) | 52, 80, 82, 177, 219, 221 |
| BstV1I | GCAGC | 3 cut(s) | 2794, 2841, 2896 |
| BstV2I | GAAGAC | 3 cut(s) | 2077, 2503, 2607 |
| BstX2I | RGATCY | 5 cut(s) | 298, 338, 578, 1169, 1705 |
| BstYI | RGATCY | 5 cut(s) | 298, 338, 578, 1169, 1705 |
| BstZ17I | GTATAC | 1 cut(s) | 2613 |
| Bsu15I | ATCGAT | 2 cut(s) | 149, 1323 |
| BsuI | GTATCC | 2 cut(s) | 1958, 2967 |
| BsuRI | GGCC | 1 cut(s) | 2240 |
| BsuTUI | ATCGAT | 2 cut(s) | 149, 1323 |
| BtgI | CCRYGG | 2 cut(s) | 18, 391 |
| BtrI | CACGTC | 4 cut(s) | 206, 529, 573, 2201 |
| BtsCI | GGATG | 6 cut(s) | 361, 535, 915, 1199, 1635, 2587 |
| BtsIMutI | CAGTG | 3 cut(s) | 1337, 2374, 2855 |
| Cac8I | GCNNGC | 5 cut(s) | 54, 221, 993, 2025, 2185 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2854 |
| CfoI | GCGC | 5 cut(s) | 52, 82, 179, 221, 223 |
| Cfr13I | GGNCC | 3 cut(s) | 2036, 2483, 2756 |
| ClaI | ATCGAT | 2 cut(s) | 149, 1323 |
| CseI | GACGC | 3 cut(s) | 71, 74, 223 |
| CsiI | ACCWGGT | 1 cut(s) | 1663 |
| Csp6I | GTAC | 1 cut(s) | 196 |
| CviAII | CATG | 5 cut(s) | 322, 392, 1373, 2303, 2378 |
| CviQI | GTAC | 1 cut(s) | 196 |
| DdeI | CTNAG | 7 cut(s) | 1305, 1505, 1587, 1701, 1892, 2268, 2547 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 68 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 68 |
| Eam1104I | CTCTTC | 5 cut(s) | 205, 565, 2034, 2826, 2952 |
| EarI | CTCTTC | 5 cut(s) | 205, 565, 2034, 2826, 2952 |
| EciI | GGCGGA | 1 cut(s) | 1641 |
| Ecl136II | GAGCTC | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 2 cut(s) | 391, 922 |
| Eco24I | GRGCYC | 2 cut(s) | 231, 2539 |
| Eco31I | GGTCTC | 1 cut(s) | 313 |
| Eco47I | GGWCC | 3 cut(s) | 2036, 2483, 2756 |
| Eco53kI | GAGCTC | 1 cut(s) | 229 |
| Eco57I | CTGAAG | 4 cut(s) | 1523, 2100, 2426, 2976 |
| Eco88I | CYCGRG | 1 cut(s) | 625 |
| EcoICRI | GAGCTC | 1 cut(s) | 229 |
| EcoRII | CCWGG | 2 cut(s) | 1663, 1979 |
| EcoT14I | CCWWGG | 2 cut(s) | 391, 922 |
| EcoT38I | GRGCYC | 2 cut(s) | 231, 2539 |
| ErhI | CCWWGG | 2 cut(s) | 391, 922 |
| Esp3I | CGTCTC | 4 cut(s) | 212, 555, 1049, 2191 |
| FaeI | CATG | 5 cut(s) | 325, 395, 1376, 2306, 2381 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2124, 2156, 2625, 2657 |
| FaqI | GGGAC | 2 cut(s) | 1472, 2469 |
| FatI | CATG | 5 cut(s) | 321, 391, 1372, 2302, 2377 |
| FauI | CCCGC | 3 cut(s) | 1447, 1542, 2914 |
| FbaI | TGATCA | 4 cut(s) | 1327, 1836, 2251, 2845 |
| FblI | GTMKAC | 1 cut(s) | 2612 |
| Fnu4HI | GCNGC | 5 cut(s) | 180, 327, 2808, 2855, 2910 |
| FokI | GGATG | 6 cut(s) | 348, 522, 922, 1186, 1642, 2594 |
| FriOI | GRGCYC | 2 cut(s) | 231, 2539 |
| Fsp4HI | GCNGC | 5 cut(s) | 180, 327, 2808, 2855, 2910 |
| GlaI | GCGC | 5 cut(s) | 51, 81, 178, 220, 222 |
| GluI | GCNGC | 5 cut(s) | 180, 327, 2808, 2855, 2910 |
| GsuI | CTGGAG | 1 cut(s) | 194 |
| HaeIII | GGCC | 1 cut(s) | 2240 |
| HapII | CCGG | 8 cut(s) | 305, 498, 542, 614, 1490, 2049, 2951, 2987 |
| HgaI | GACGC | 3 cut(s) | 71, 74, 223 |
| HhaI | GCGC | 5 cut(s) | 52, 82, 179, 221, 223 |
| Hin1I | GRCGYC | 5 cut(s) | 107, 358, 416, 548, 1610 |
| Hin1II | CATG | 5 cut(s) | 325, 395, 1376, 2306, 2381 |
| Hin6I | GCGC | 5 cut(s) | 50, 80, 177, 219, 221 |
| HinP1I | GCGC | 5 cut(s) | 50, 80, 177, 219, 221 |
| HincII | GTYRAC | 1 cut(s) | 2473 |
| HindII | GTYRAC | 1 cut(s) | 2473 |
| HindIII | AAGCTT | 5 cut(s) | 1007, 1618, 2634, 2684, 2875 |
| HpaI | GTTAAC | 1 cut(s) | 2473 |
| HpaII | CCGG | 8 cut(s) | 305, 498, 542, 614, 1490, 2049, 2951, 2987 |
| HphI | GGTGA | 8 cut(s) | 503, 556, 668, 698, 1004, 1285, 1846, 2533 |
| Hpy166II | GTNNAC | 5 cut(s) | 570, 762, 2096, 2473, 2613 |
| Hpy8I | GTNNAC | 5 cut(s) | 570, 762, 2096, 2473, 2613 |
| HpyAV | CCTTC | 3 cut(s) | 153, 270, 1359 |
| HpyCH4V | TGCA | 5 cut(s) | 56, 1447, 1602, 1875, 2857 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1534, 1651, 1940, 2201 |
| HpyF3I | CTNAG | 7 cut(s) | 1305, 1505, 1587, 1701, 1892, 2268, 2547 |
| Hsp92I | GRCGYC | 5 cut(s) | 107, 358, 416, 548, 1610 |
| Hsp92II | CATG | 5 cut(s) | 325, 395, 1376, 2306, 2381 |
| HspAI | GCGC | 5 cut(s) | 50, 80, 177, 219, 221 |
| Ksp22I | TGATCA | 4 cut(s) | 1327, 1836, 2251, 2845 |
| KspAI | GTTAAC | 1 cut(s) | 2473 |
| LguI | GCTCTTC | 1 cut(s) | 2034 |
| LmnI | GCTCC | 3 cut(s) | 1369, 2875, 2917 |
| Lsp1109I | GCAGC | 3 cut(s) | 2794, 2841, 2896 |
| LweI | GCATC | 1 cut(s) | 1787 |
| MabI | ACCWGGT | 1 cut(s) | 1663 |
| MbiI | CCGCTC | 1 cut(s) | 1442 |
| MfeI | CAATTG | 1 cut(s) | 1850 |
| MflI | RGATCY | 5 cut(s) | 298, 338, 578, 1169, 1705 |
| MhlI | GDGCHC | 2 cut(s) | 231, 2539 |
| MluCI | AATT | 4 cut(s) | 554, 1593, 1850, 1953 |
| MlyI | GAGTC | 8 cut(s) | 343, 487, 617, 1579, 1985, 2291, 2954, 3003 |
| MmeI | TCCRAC | 2 cut(s) | 1109, 2601 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1042, 1620, 2415 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2114 |
| MspA1I | CMGCKG | 1 cut(s) | 2909 |
| MspCI | CTTAAG | 2 cut(s) | 2540, 2795 |
| MspI | CCGG | 8 cut(s) | 305, 498, 542, 614, 1490, 2049, 2951, 2987 |
| MspR9I | CCNGG | 4 cut(s) | 499, 1665, 1981, 2050 |
| MunI | CAATTG | 1 cut(s) | 1850 |
| Mva1269I | GAATGC | 1 cut(s) | 1945 |
| MvaI | CCWGG | 2 cut(s) | 1665, 1981 |
| MvnI | CGCG | 6 cut(s) | 52, 80, 82, 177, 219, 221 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1534, 1651, 1940, 2201 |
| NciI | CCSGG | 2 cut(s) | 499, 2050 |
| NcoI | CCATGG | 1 cut(s) | 391 |
| NlaIII | CATG | 5 cut(s) | 325, 395, 1376, 2306, 2381 |
| NlaIV | GGNNCC | 1 cut(s) | 2485 |
| NmeAIII | GCCGAG | 1 cut(s) | 2266 |
| NmuCI | GTSAC | 7 cut(s) | 108, 544, 1291, 2127, 2294, 2521, 2674 |
| NspV | TTCGAA | 1 cut(s) | 266 |
| PauI | GCGCGC | 1 cut(s) | 219 |
| PciSI | GCTCTTC | 1 cut(s) | 2034 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 72, 413 |
| PctI | GAATGC | 1 cut(s) | 1945 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1042, 1620, 2415 |
| PflFI | GACNNNGTC | 1 cut(s) | 68 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2433 |
| PfoI | TCCNGGA | 1 cut(s) | 1979 |
| PkrI | GCNGC | 5 cut(s) | 181, 328, 2809, 2856, 2911 |
| PleI | GAGTC | 8 cut(s) | 343, 486, 617, 1578, 1984, 2291, 2953, 3002 |
| PpsI | GAGTC | 8 cut(s) | 343, 486, 617, 1578, 1984, 2291, 2953, 3002 |
| Ppu21I | YACGTR | 1 cut(s) | 1999 |
| PshAI | GACNNNNGTC | 2 cut(s) | 627, 1467 |
| Psp124BI | GAGCTC | 1 cut(s) | 231 |
| Psp1406I | AACGTT | 1 cut(s) | 758 |
| Psp6I | CCWGG | 2 cut(s) | 1663, 1979 |
| PspGI | CCWGG | 2 cut(s) | 1663, 1979 |
| PspN4I | GGNNCC | 1 cut(s) | 2485 |
| PspPI | GGNCC | 3 cut(s) | 2036, 2483, 2756 |
| PstI | CTGCAG | 1 cut(s) | 1449 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2854 |
| PsuI | RGATCY | 5 cut(s) | 298, 338, 578, 1169, 1705 |
| PsyI | GACNNNGTC | 1 cut(s) | 68 |
| PteI | GCGCGC | 1 cut(s) | 219 |
| RsaI | GTAC | 1 cut(s) | 197 |
| RsaNI | GTAC | 1 cut(s) | 196 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2114 |
| SacI | GAGCTC | 1 cut(s) | 231 |
| SapI | GCTCTTC | 1 cut(s) | 2034 |
| SatI | GCNGC | 5 cut(s) | 180, 327, 2808, 2855, 2910 |
| Sau96I | GGNCC | 3 cut(s) | 2036, 2483, 2756 |
| SchI | GAGTC | 8 cut(s) | 343, 487, 617, 1579, 1985, 2291, 2954, 3003 |
| ScrFI | CCNGG | 4 cut(s) | 499, 1665, 1981, 2050 |
| SduI | GDGCHC | 2 cut(s) | 231, 2539 |
| SexAI | ACCWGGT | 1 cut(s) | 1663 |
| SfaNI | GCATC | 1 cut(s) | 1787 |
| SfcI | CTRYAG | 3 cut(s) | 673, 1445, 2967 |
| SfuI | TTCGAA | 1 cut(s) | 266 |
| SinI | GGWCC | 3 cut(s) | 2036, 2483, 2756 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2114 |
| SmlI | CTYRAG | 6 cut(s) | 224, 342, 1711, 2540, 2642, 2795 |
| SmoI | CTYRAG | 6 cut(s) | 224, 342, 1711, 2540, 2642, 2795 |
| SpeI | ACTAGT | 1 cut(s) | 724 |
| Sse9I | AATT | 4 cut(s) | 554, 1593, 1850, 1953 |
| SspI | AATATT | 1 cut(s) | 2728 |
| SstI | GAGCTC | 1 cut(s) | 231 |
| StyD4I | CCNGG | 4 cut(s) | 497, 1663, 1979, 2048 |
| StyI | CCWWGG | 2 cut(s) | 391, 922 |
| TasI | AATT | 4 cut(s) | 554, 1593, 1850, 1953 |
| TauI | GCSGC | 2 cut(s) | 182, 329 |
| TscAI | CASTG | 3 cut(s) | 1337, 2374, 2855 |
| TseFI | GTSAC | 7 cut(s) | 108, 544, 1291, 2127, 2294, 2521, 2674 |
| TseI | GCWGC | 3 cut(s) | 2807, 2854, 2909 |
| Tsp45I | GTSAC | 7 cut(s) | 108, 544, 1291, 2127, 2294, 2521, 2674 |
| TspGWI | ACGGA | 5 cut(s) | 53, 64, 422, 639, 2282 |
| TspRI | CASTG | 3 cut(s) | 1337, 2374, 2855 |
| Tth111I | GACNNNGTC | 1 cut(s) | 68 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2433 |
| Vha464I | CTTAAG | 2 cut(s) | 2540, 2795 |
| VpaK11BI | GGWCC | 3 cut(s) | 2036, 2483, 2756 |
| XbaI | TCTAGA | 3 cut(s) | 247, 2770, 2939 |
| XmiI | GTMKAC | 1 cut(s) | 2612 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1042, 1620, 2415 |
| ZraI | GACGTC | 5 cut(s) | 108, 359, 417, 549, 1611 |