Rmu_co8209630.1_g000001
ERF Family

Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8209630.1
OG0010747
Physical Location & Seq
Reverse (-)
2 .. 404
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8209630.1_g000001.1.cds

Sequence Viewer

Length: 403 bp
atgccgacgccggtgagcgcggccaggcaatgtttgacggaggaggcggcgcgtgcgctggacgacgcagtggccgtggcgcgtaggaggagccacgcgcagacgacgtcgcttcatgcggtgtcggctctgctctccctgccgtcgtccgctctccgcgacgcctgcgcacgcgccaggagcggcgcgtacccgtacacgccgcggctgcagttccgggcgctggagctgtcggtcggggtgtcgctggaccggctgccgtcgtcgtcgaaggcgcaggaggagccgccggtgtcgaactcgctgatggcggcgatcaagcggtcgcaggcgaaccagaggcggcacccggagagcttccacctgcaccagatccacagccagcagcagacggcgtcgcttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347
KEGG Pathways
Metabolic & Signaling
ko04213 map04213
Pfam Domains
Protein Families
AAA_2 Clp_N

Protein Analysis

134

Amino Acids

14.55

Weight (kDa)

10.36

Isoelectric Point (pI)

78.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07200 AT1G07200 AT2G29970
fragaria_vesca FvH4_3g38740
malus_domestica MD03G1068500.v1.1 MD11G1072900.v1.1
prunus_persica Prupe.6G056400_v2.0.a1
pyrus_communis pycom03g05500 pycom11g06060
rosa_chinensis RchiOBHm_Chr5g0069891
rosa_laevigata RLG00000036105
rosa_multiflora Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001
rosa_roxburghii Rroxscaffold_1G00011170
rosa_rugosa Rorug05G0400500
rosa_samantha Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300
rosa_wichuraiana Rw5G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 372
AatII GACGTC 1 cut(s) 110
Acc16I TGCGCA 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 2 cut(s) 152, 183
AccII CGCG 8 cut(s) 20, 52, 82, 98, 159, 174, 188, 205
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 2 cut(s) 21, 72
AcyI GRCGYC 4 cut(s) 8, 107, 162, 395
AfaI GTAC 2 cut(s) 191, 197
AfiI CCNNNNNNNGG 1 cut(s) 223
AjnI CCWGG 2 cut(s) 23, 176
AluBI AGCT 2 cut(s) 229, 357
AluI AGCT 2 cut(s) 229, 357
AlwI GGATC 1 cut(s) 367
AoxI GGCC 2 cut(s) 21, 72
ApeKI GCWGC 3 cut(s) 208, 256, 385
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 2 cut(s) 218, 350
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 195, 243, 397
BccI CCATC 1 cut(s) 301
BceAI ACGGC 3 cut(s) 59, 127, 244
BciT130I CCWGG 2 cut(s) 25, 178
BcnI CCSGG 2 cut(s) 218, 350
BfmI CTRYAG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 372
Bme1390I CCNGG 4 cut(s) 25, 178, 218, 350
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 92, 285, 347
BmrFI CCNGG 4 cut(s) 25, 178, 218, 350
BpmI CTGGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 218, 350
BsaHI GRCGYC 4 cut(s) 8, 107, 162, 395
BsaJI CCNNGG 2 cut(s) 75, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 3 cut(s) 10, 252, 289
Bse3DI GCAATG 1 cut(s) 35
BseBI CCWGG 2 cut(s) 25, 178
BseDI CCNNGG 2 cut(s) 75, 203
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 35
BseRI GAGGAG 3 cut(s) 56, 103, 296
BseXI GCAGC 3 cut(s) 195, 243, 397
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 8 cut(s) 20, 52, 82, 98, 159, 174, 188, 205
Bsh1285I CGRYCG 2 cut(s) 237, 326
BshFI GGCC 2 cut(s) 23, 74
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 2 cut(s) 237, 326
BsiSI CCGG 5 cut(s) 11, 217, 253, 290, 350
BslI CCNNNNNNNGG 1 cut(s) 223
BsnI GGCC 2 cut(s) 23, 74
Bsp143I GATC 2 cut(s) 315, 372
BspANI GGCC 2 cut(s) 23, 74
BspFNI CGCG 8 cut(s) 20, 52, 82, 98, 159, 174, 188, 205
BspLI GGNNCC 3 cut(s) 92, 285, 347
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 345
BsrBI CCGCTC 2 cut(s) 152, 183
BsrDI GCAATG 1 cut(s) 35
BsrFI RCCGGY 3 cut(s) 10, 252, 289
BssAI RCCGGY 3 cut(s) 10, 252, 289
BssECI CCNNGG 2 cut(s) 75, 203
BssMI GATC 2 cut(s) 315, 372
BssNI GRCGYC 4 cut(s) 8, 107, 162, 395
Bst2UI CCWGG 2 cut(s) 25, 178
BstACI GRCGYC 4 cut(s) 8, 107, 162, 395
BstC8I GCNNGC 5 cut(s) 54, 166, 172, 330, 383
BstDSI CCRYGG 2 cut(s) 75, 203
BstFNI CGCG 8 cut(s) 20, 52, 82, 98, 159, 174, 188, 205
BstH2I RGCGCY 1 cut(s) 224
BstKTI GATC 2 cut(s) 318, 375
BstMBI GATC 2 cut(s) 315, 372
BstMCI CGRYCG 2 cut(s) 237, 326
BstMWI GCNNNNNNNGC 8 cut(s) 53, 125, 139, 165, 180, 208, 253, 283
BstNI CCWGG 2 cut(s) 25, 178
BstSCI CCNGG 4 cut(s) 23, 176, 216, 348
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 8 cut(s) 20, 52, 82, 98, 159, 174, 188, 205
BstV1I GCAGC 3 cut(s) 195, 243, 397
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 2 cut(s) 23, 74
BtgI CCRYGG 2 cut(s) 75, 203
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 5 cut(s) 54, 166, 172, 330, 383
Cfr10I RCCGGY 3 cut(s) 10, 252, 289
Cfr13I GGNCC 1 cut(s) 250
Cfr42I CCGCGG 1 cut(s) 206
CseI GACGC 4 cut(s) 16, 74, 170, 384
Csp6I GTAC 2 cut(s) 190, 196
CviAII CATG 1 cut(s) 116
CviQI GTAC 2 cut(s) 190, 196
DpnI GATC 2 cut(s) 317, 374
DpnII GATC 2 cut(s) 315, 372
EaeI YGGCCR 2 cut(s) 21, 72
Eco47I GGWCC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 23, 176
FaeI CATG 1 cut(s) 119
FaiI YATR 1 cut(s) 117
FatI CATG 1 cut(s) 115
FspI TGCGCA 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 2 cut(s) 23, 74
HapII CCGG 5 cut(s) 11, 217, 253, 290, 350
HgaI GACGC 4 cut(s) 16, 74, 170, 384
Hin1I GRCGYC 4 cut(s) 8, 107, 162, 395
Hin1II CATG 1 cut(s) 119
HpaII CCGG 5 cut(s) 11, 217, 253, 290, 350
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 211, 367
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 125, 139, 165, 180, 208, 253, 283
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 4 cut(s) 8, 107, 162, 395
Hsp92II CATG 1 cut(s) 119
KspI CCGCGG 1 cut(s) 206
Kzo9I GATC 2 cut(s) 315, 372
LmnI GCTCC 4 cut(s) 90, 180, 226, 283
Lsp1109I GCAGC 3 cut(s) 195, 243, 397
MaeII ACGT 1 cut(s) 107
MalI GATC 2 cut(s) 317, 374
MbiI CCGCTC 2 cut(s) 152, 183
MboI GATC 2 cut(s) 315, 372
MflI RGATCY 1 cut(s) 372
MnlI CCTC 5 cut(s) 34, 37, 81, 274, 333
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 5 cut(s) 11, 217, 253, 290, 350
MspR9I CCNGG 4 cut(s) 25, 178, 218, 350
MvaI CCWGG 2 cut(s) 25, 178
MvnI CGCG 8 cut(s) 20, 52, 82, 98, 159, 174, 188, 205
MwoI GCNNNNNNNGC 8 cut(s) 53, 125, 139, 165, 180, 208, 253, 283
NciI CCSGG 2 cut(s) 218, 350
NdeII GATC 2 cut(s) 315, 372
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 3 cut(s) 92, 285, 347
NsbI TGCGCA 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PflFI GACNNNGTC 2 cut(s) 106, 394
Psp6I CCWGG 2 cut(s) 23, 176
PspGI CCWGG 2 cut(s) 23, 176
PspN4I GGNNCC 3 cut(s) 92, 285, 347
PspPI GGNCC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 372
PsyI GACNNNGTC 2 cut(s) 106, 394
RsaI GTAC 2 cut(s) 191, 197
RsaNI GTAC 2 cut(s) 190, 196
SacII CCGCGG 1 cut(s) 206
Sau3AI GATC 2 cut(s) 315, 372
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 4 cut(s) 25, 178, 218, 350
SetI ASST 4 cut(s) 110, 231, 359, 366
SfcI CTRYAG 1 cut(s) 209
Sfr303I CCGCGG 1 cut(s) 206
SgrAI CRCCGGYG 2 cut(s) 10, 289
SgrBI CCGCGG 1 cut(s) 206
SinI GGWCC 1 cut(s) 250
StyD4I CCNGG 4 cut(s) 23, 176, 216, 348
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 269, 296
TaqII GACCGA 1 cut(s) 223
TauI GCSGC 8 cut(s) 23, 50, 186, 205, 208, 289, 314, 346
TscAI CASTG 1 cut(s) 75
TseI GCWGC 3 cut(s) 208, 256, 385
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 75
Tth111I GACNNNGTC 2 cut(s) 106, 394
VpaK11BI GGWCC 1 cut(s) 250
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.