Rorug05G0400500
ERF Family

Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010747
Physical Location & Seq
Reverse (-)
55053084 .. 55054803
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0400500.1

Sequence Viewer

Length: 1188 bp
ATGAATATTAATCCGGGGGCCACATCGAATTGTTTCCAAGGTATGTACTCCATGACGGGTCAAGATACAGTTTCGTCGTTTTCACTCGAACCAGACTCATCATCATCTGGAGCAGTACTACCCCAAGATCAGAATCACTCGAATTCTCTTCTCTACAGCCTCTCCGTCCTTAAAGAGAAAGTTCATCAAGCCAAATCGCTGGTCGGCGTCCTTATTGCTCCTCCAGATCATCACCAAAGTCAACAACAACAACTTCCAGAGTCAACGACCATGGGCGCCGTGGCGAGCATGAACAATGTTATCCAAGAAATCATCGTCACCGCGTCTTCGATGATGTTCACTTGCCAGCAGATGGCCCTTGTTGCTCCAGGTAACGACACAAGATCTGAACCAAACTTTAGTACTAGTACTGCTGGTCGTAGCAACATTAGAGACGCTGCTTTCTATTCAACAAATGATCAAACACTCGATTGGTTTAGTACTGAGAACTACAACAACTGTCCCACTAGGGATGTGATCAGTAGGAGTCATGGACAGGTCGAAACGAAAGAGTTTCCTCAAAGAGTTGAAACCAACAATGCGTTACAGGTACAAAATCTTCCCCCAAAGAACTCGAGCTACGACATAATTGAGTTGGATGCTGCTGATTTGTTGGCCAAGTACACTCATTACTGCCAAGTTTGCGGGAAAGGGTTCAAGCGTGATGCAAACTTGAGAATGCACATGAGGGCTCATGGGGATGAATACAAGACTAGCATTGCCTTGAGCAACCCTTTGAAGAACAACAATAAGCAGAATAGTGCAGTGAACATACATGGATCGAGCGATGCTGAGTGTTCGGTGAAATTACCGAGGAAATATTCATGTCCTCAAGAAGGGTGCAGATGGAATCAAAAGCACGCCAAATTCCAGCCTCTGAAGTCCATGATCTGCGTGAAAAATCACTACAAGAGGAGCCATTGTCCGAAGATGTATATATGTAAGAGGTGCAATCGGAAGCAGTTTTCTGTGTTATCTGATCTAAGAACGCATGAAAAGCACTGTGGGGATCTCAGGTGGCAATGCTCTTGCGGAACCACATTTTCTAGGAAAGATAAGCTTATGGGTCATGTTGCTTTGTTCGTTGGACACACACCAGTTATATTCAGTTCTAATTTGCCTATTAGGCATGGAAAAGCTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347
KEGG Pathways
Metabolic & Signaling
ko04213 map04213
Pfam Domains
Protein Families
AAA_2 Clp_N

Protein Analysis

395

Amino Acids

44.11

Weight (kDa)

8.95

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_STOP2_3rd PF23115 287 - 321 4.3e-22 STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C PF23118 352 - 381 3.3e-17 STOP2-like, C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07200 AT1G07200 AT2G29970
fragaria_vesca FvH4_3g38740
malus_domestica MD03G1068500.v1.1 MD11G1072900.v1.1
prunus_persica Prupe.6G056400_v2.0.a1
pyrus_communis pycom03g05500 pycom11g06060
rosa_chinensis RchiOBHm_Chr5g0069891
rosa_laevigata RLG00000036105
rosa_multiflora Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001
rosa_roxburghii Rroxscaffold_1G00011170
rosa_rugosa Rorug05G0400500
rosa_samantha Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300
rosa_wichuraiana Rw5G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 352
AccII CGCG 1 cut(s) 323
AciI CCGC 3 cut(s) 321, 684, 1071
AclWI GGATC 2 cut(s) 826, 1056
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 2 cut(s) 142, 905
AcuI CTGAAG 1 cut(s) 938
AcyI GRCGYC 2 cut(s) 207, 276
AfaI GTAC 7 cut(s) 47, 117, 403, 409, 481, 591, 662
AfiI CCNNNNNNNGG 2 cut(s) 352, 875
AgsI TTSAA 4 cut(s) 450, 569, 697, 778
AhlI ACTAGT 1 cut(s) 404
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 618, 1099, 1178
AluI AGCT 3 cut(s) 618, 1099, 1178
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 2 cut(s) 826, 1056
AlwNI CAGNNNCTG 1 cut(s) 916
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 3 cut(s) 18, 354, 654
ApeKI GCWGC 2 cut(s) 437, 641
ApoI RAATTY 2 cut(s) 142, 905
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 2 cut(s) 32, 692
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 18, 355
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 224, 310, 853
AvaI CYCGRG 1 cut(s) 613
BalI TGGCCA 1 cut(s) 656
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 733
BarI GAAGNNNNNNTAC 2 cut(s) 582, 614
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 424, 628
BccI CCATC 2 cut(s) 346, 879
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 2 cut(s) 457, 516
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 404
BfaI CTAG 4 cut(s) 405, 507, 753, 1086
BfmI CTRYAG 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 279
BglI GCCNNNNNGGC 1 cut(s) 1165
BglII AGATCT 1 cut(s) 383
BisI GCNGC 2 cut(s) 438, 642
BlsI GCNGC 2 cut(s) 439, 643
BmcAI AGTACT 4 cut(s) 117, 403, 409, 481
Bme1390I CCNGG 2 cut(s) 15, 369
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 18, 355
BmiI GGNNCC 4 cut(s) 19, 277, 956, 1075
BmrFI CCNGG 2 cut(s) 15, 369
BmsI GCATC 3 cut(s) 628, 694, 817
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 3 cut(s) 129, 207, 351
BpuEI CTTGAG 3 cut(s) 733, 784, 855
BpuMI CCSGG 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 2 cut(s) 207, 276
BsaJI CCNNGG 5 cut(s) 14, 37, 270, 279, 851
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 946, 976
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 875
Bse1I ACTGG 1 cut(s) 1136
Bse3DI GCAATG 2 cut(s) 756, 1067
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 5 cut(s) 14, 37, 270, 279, 851
BseGI GGATG 3 cut(s) 517, 643, 745
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 352, 875
BseMI GCAATG 2 cut(s) 756, 1067
BseMII CTCAG 3 cut(s) 474, 822, 1066
BseNI ACTGG 1 cut(s) 1136
BseRI GAGGAG 2 cut(s) 210, 967
BseXI GCAGC 2 cut(s) 424, 628
BsgI GTGCAG 2 cut(s) 822, 901
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 3 cut(s) 20, 356, 656
BshNI GGYRCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 2 cut(s) 352, 875
BsmAI GTCTC 1 cut(s) 426
BsmBI CGTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 486
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 3 cut(s) 20, 356, 656
BsoBI CYCGRG 1 cut(s) 613
Bsp1286I GDGCHC 1 cut(s) 733
Bsp143I GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 3 cut(s) 321, 684, 1071
BspANI GGCC 3 cut(s) 20, 356, 656
BspCNI CTCAG 3 cut(s) 475, 823, 1065
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 4 cut(s) 19, 277, 956, 1075
BspPI GGATC 2 cut(s) 826, 1056
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 756, 1067
BsrI ACTGG 1 cut(s) 1136
BssECI CCNNGG 5 cut(s) 14, 37, 270, 279, 851
BssMI GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
BssNI GRCGYC 2 cut(s) 207, 276
BssT1I CCWWGG 2 cut(s) 37, 270
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 70, 500, 1043
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 2 cut(s) 207, 276
BstC8I GCNNGC 3 cut(s) 286, 347, 900
BstDEI CTNAG 4 cut(s) 483, 831, 1022, 1052
BstDSI CCRYGG 2 cut(s) 270, 279
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 3 cut(s) 517, 643, 745
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 9 cut(s) 130, 229, 386, 460, 519, 821, 930, 1021, 1051
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
BstMWI GCNNNNNNNGC 4 cut(s) 362, 681, 1036, 1165
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 13, 367
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 424, 628
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 2 cut(s) 383, 1048
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 2 cut(s) 383, 1048
BsuRI GGCC 3 cut(s) 20, 356, 656
BtgI CCRYGG 2 cut(s) 270, 279
BtgZI GCGATG 1 cut(s) 840
BtsCI GGATG 3 cut(s) 517, 643, 745
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 2 cut(s) 810, 1039
Cac8I GCNNGC 3 cut(s) 286, 347, 900
CaiI CAGNNNCTG 1 cut(s) 916
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 18, 355
CseI GACGC 3 cut(s) 196, 312, 443
Csp6I GTAC 7 cut(s) 46, 116, 402, 408, 480, 590, 661
CviQI GTAC 7 cut(s) 46, 116, 402, 408, 480, 590, 661
DdeI CTNAG 4 cut(s) 483, 831, 1022, 1052
DinI GGCGCC 1 cut(s) 277
DpnI GATC 9 cut(s) 129, 228, 385, 459, 518, 820, 929, 1020, 1050
DpnII GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 37, 270
Eco24I GRGCYC 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 938
Eco88I CYCGRG 1 cut(s) 613
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 2 cut(s) 37, 270
EcoT38I GRGCYC 1 cut(s) 733
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 2 cut(s) 37, 270
Esp3I CGTCTC 1 cut(s) 426
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 1 cut(s) 486
FauI CCCGC 1 cut(s) 677
FbaI TGATCA 2 cut(s) 457, 516
Fnu4HI GCNGC 2 cut(s) 438, 642
FokI GGATG 3 cut(s) 524, 650, 752
FriOI GRGCYC 1 cut(s) 733
Fsp4HI GCNGC 2 cut(s) 438, 642
FspBI CTAG 4 cut(s) 405, 507, 753, 1086
GlaI GCGC 1 cut(s) 277
GluI GCNGC 2 cut(s) 438, 642
GsuI CTGGAG 3 cut(s) 129, 207, 351
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 3 cut(s) 20, 356, 656
HapII CCGG 1 cut(s) 14
HgaI GACGC 3 cut(s) 196, 312, 443
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 2 cut(s) 207, 276
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 2 cut(s) 242, 264
HindII GTYRAC 2 cut(s) 242, 264
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 5 cut(s) 95, 133, 260, 526, 889
HpaII CCGG 1 cut(s) 14
HphI GGTGA 3 cut(s) 224, 310, 853
Hpy166II GTNNAC 6 cut(s) 242, 264, 339, 663, 808, 1183
Hpy188I TCNGA 6 cut(s) 132, 388, 918, 966, 996, 1018
Hpy188III TCNNGA 5 cut(s) 62, 108, 224, 257, 872
Hpy8I GTNNAC 6 cut(s) 242, 264, 339, 663, 808, 1183
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 869
HpyCH4III ACNGT 3 cut(s) 70, 500, 1043
HpyCH4V TGCA 5 cut(s) 707, 721, 803, 882, 990
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 681, 1036, 1165
HpyF3I CTNAG 4 cut(s) 483, 831, 1022, 1052
Hsp92I GRCGYC 2 cut(s) 207, 276
HspAI GCGC 1 cut(s) 276
KasI GGCGCC 1 cut(s) 275
Ksp22I TGATCA 2 cut(s) 457, 516
Kzo9I GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
LmnI GCTCC 4 cut(s) 110, 223, 370, 954
Lsp1109I GCAGC 2 cut(s) 424, 628
LweI GCATC 3 cut(s) 628, 694, 817
MaeI CTAG 4 cut(s) 405, 507, 753, 1086
MaeIII GTNAC 3 cut(s) 316, 371, 582
MalI GATC 9 cut(s) 129, 228, 385, 459, 518, 820, 929, 1020, 1050
MboI GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
MboII GAAGA 5 cut(s) 140, 318, 590, 790, 979
MflI RGATCY 2 cut(s) 383, 1048
MhlI GDGCHC 1 cut(s) 733
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 6 cut(s) 28, 142, 627, 845, 905, 1153
MluNI TGGCCA 1 cut(s) 656
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 3 cut(s) 89, 269, 535
MmeI TCCRAC 2 cut(s) 615, 1105
MnlI CCTC 9 cut(s) 170, 231, 567, 720, 846, 879, 924, 945, 978
Mox20I TGGCCA 1 cut(s) 656
MroXI GAANNNNTTC 2 cut(s) 32, 692
MscI TGGCCA 1 cut(s) 656
MseI TTAA 2 cut(s) 9, 171
MslI CAYNNNNRTG 1 cut(s) 738
Msp20I TGGCCA 1 cut(s) 656
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 15, 369
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 362, 681, 1036, 1165
NarI GGCGCC 1 cut(s) 276
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 270
NdeII GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
NlaIV GGNNCC 4 cut(s) 19, 277, 956, 1075
NmuCI GTSAC 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 613
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 2 cut(s) 32, 692
PfeI GAWTC 2 cut(s) 133, 889
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 2 cut(s) 439, 643
PleI GAGTC 3 cut(s) 89, 268, 534
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 3 cut(s) 89, 268, 534
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 4 cut(s) 19, 277, 956, 1075
PspPI GGNCC 2 cut(s) 18, 355
PspXI VCTCGAGB 1 cut(s) 613
PsrI GAACNNNNNNTAC 2 cut(s) 602, 634
PstNI CAGNNNCTG 1 cut(s) 916
PsuI RGATCY 2 cut(s) 383, 1048
RsaI GTAC 7 cut(s) 47, 117, 403, 409, 481, 591, 662
RsaNI GTAC 7 cut(s) 46, 116, 402, 408, 480, 590, 661
RseI CAYNNNNRTG 1 cut(s) 738
SaqAI TTAA 2 cut(s) 9, 171
SatI GCNGC 2 cut(s) 438, 642
Sau3AI GATC 9 cut(s) 127, 226, 383, 457, 516, 818, 927, 1018, 1048
Sau96I GGNCC 2 cut(s) 18, 355
ScaI AGTACT 4 cut(s) 117, 403, 409, 481
SchI GAGTC 3 cut(s) 89, 269, 535
ScrFI CCNGG 2 cut(s) 15, 369
SduI GDGCHC 1 cut(s) 733
SetI ASST 9 cut(s) 43, 373, 540, 591, 620, 989, 1058, 1101, 1180
SfaNI GCATC 3 cut(s) 628, 694, 817
SfcI CTRYAG 1 cut(s) 154
SfoI GGCGCC 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 613
SlaI CTCGAG 1 cut(s) 613
SmiMI CAYNNNNRTG 1 cut(s) 738
SmlI CTYRAG 4 cut(s) 613, 712, 763, 870
SmoI CTYRAG 4 cut(s) 613, 712, 763, 870
SpeI ACTAGT 1 cut(s) 404
Sse9I AATT 6 cut(s) 28, 142, 627, 845, 905, 1153
SsiI CCGC 3 cut(s) 321, 684, 1071
SspDI GGCGCC 1 cut(s) 275
SspI AATATT 2 cut(s) 7, 860
SspMI CTAG 4 cut(s) 405, 507, 753, 1086
StyD4I CCNGG 2 cut(s) 13, 367
StyI CCWWGG 2 cut(s) 37, 270
TaaI ACNGT 3 cut(s) 70, 500, 1043
TaqI TCGA 8 cut(s) 26, 87, 140, 329, 468, 540, 614, 821
TasI AATT 6 cut(s) 28, 142, 627, 845, 905, 1153
TatI WGTACW 6 cut(s) 45, 115, 401, 407, 479, 660
TfiI GAWTC 2 cut(s) 133, 889
Tru1I TTAA 2 cut(s) 9, 171
Tru9I TTAA 2 cut(s) 9, 171
TscAI CASTG 2 cut(s) 810, 1046
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 437, 641
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 6 cut(s) 17, 173, 305, 756, 852, 1047
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 810, 1046
Van91I CCANNNNNTGG 1 cut(s) 352
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 873
XapI RAATTY 2 cut(s) 142, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 613
XmnI GAANNNNTTC 2 cut(s) 32, 692
XspI CTAG 4 cut(s) 405, 507, 753, 1086
ZrmI AGTACT 4 cut(s) 117, 403, 409, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.