Rmu_sc0030143.1_g000001
ERF Family

Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030143.1
OG0010747
Physical Location & Seq
Reverse (-)
6084 .. 7094
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030143.1_g000001.1.cds

Sequence Viewer

Length: 822 bp
atggggtcctttgttccatttgggggattcttctctggaccatctgactttacaaatccactgagcagcacgaatcaatcttttatacgctgccatcaatgcacagagaagtacgagcaagaagttgcttctattcggaaagatggatcagccattacagttggtgatcagtgctcaactagctcaccttcttggttgcaaacgactgaacttgatcctggcaagagagtggatcttgcaaagaccaaagcagataatacgacattgagtgaaacagtattgggactgcaaaagaaatggaatgatatctgccaaaaaattcatcatggtcaaccattccctaaaatggacaattgtcaagctgggtctcatgttgcatctcctgagggctctcatactgctgcagatagaagagaaagcagcggtgaagattcatctatacaggaaagccgaagtgcaaaacatcactgccttccaatggacatgcaaaagagttttctgtcaaaacagaacttagtaatgcaagtagcttctgatgctgagtatgctggtatgcaatccaagcaattgatcagagattcaaagggtcagcaatttgaactgggaagcccctgccgttcacctttccctatccccactatgaatcttcccactgatcgcacatcatcctcatctaacacttcggtgaccacagatttaggattgggaaccttatatgcatcaactagtcagggaccaagaagtcccaagttgcaagatcatagagagcgtcttcaagagttttctgtcaaaacagaacttagtaatgcaagtagcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347
KEGG Pathways
Metabolic & Signaling
ko04213 map04213
Pfam Domains
Protein Families
AAA_2 Clp_N

Protein Analysis

273

Amino Acids

29.86

Weight (kDa)

6.45

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07200 AT1G07200 AT2G29970
fragaria_vesca FvH4_3g38740
malus_domestica MD03G1068500.v1.1 MD11G1072900.v1.1
prunus_persica Prupe.6G056400_v2.0.a1
pyrus_communis pycom03g05500 pycom11g06060
rosa_chinensis RchiOBHm_Chr5g0069891
rosa_laevigata RLG00000036105
rosa_multiflora Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001
rosa_roxburghii Rroxscaffold_1G00011170
rosa_rugosa Rorug05G0400500
rosa_samantha Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300
rosa_wichuraiana Rw5G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 741
AciI CCGC 1 cut(s) 423
AclWI GGATC 3 cut(s) 154, 209, 240
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 23, 346, 478
AgsI TTSAA 3 cut(s) 582, 599, 776
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 1 cut(s) 217
AleI CACNNNNGTG 1 cut(s) 683
AluBI AGCT 4 cut(s) 183, 362, 530, 816
AluI AGCT 4 cut(s) 183, 362, 530, 816
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 3 cut(s) 154, 209, 240
ApeKI GCWGC 4 cut(s) 66, 90, 401, 420
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 3 cut(s) 6, 38, 734
AsuHPI GGTGA 5 cut(s) 176, 177, 437, 612, 697
AvaII GGWCC 3 cut(s) 6, 38, 734
AxyI CCTNAGG 1 cut(s) 384
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 4 cut(s) 77, 78, 388, 432
BccI CCATC 3 cut(s) 49, 102, 137
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 2 cut(s) 166, 570
BcoDI GTCTC 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 2 cut(s) 180, 726
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 4 cut(s) 67, 91, 402, 421
BlsI GCNGC 4 cut(s) 68, 92, 403, 422
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 3 cut(s) 6, 38, 734
BmgT120I GGNCC 3 cut(s) 6, 38, 734
BmiI GGNNCC 3 cut(s) 7, 709, 735
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 3 cut(s) 386, 526, 728
BmuI ACTGGG 1 cut(s) 611
BoxI GACNNNNGTC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 764
BsaI GGTCTC 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 346, 478
Bse1I ACTGG 1 cut(s) 606
Bse21I CCTNAGG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 665
BseLI CCNNNNNNNGG 3 cut(s) 23, 346, 478
BseMII CTCAG 3 cut(s) 53, 375, 531
BseNI ACTGG 1 cut(s) 606
BseXI GCAGC 4 cut(s) 77, 78, 388, 432
BseYI CCCAGC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 176
BslFI GGGAC 3 cut(s) 297, 729, 747
BslI CCNNNNNNNGG 3 cut(s) 23, 346, 478
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 297, 729, 747
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 176, 392
Bsp143I GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
BspACI CCGC 1 cut(s) 423
BspCNI CTCAG 3 cut(s) 54, 376, 532
BspLI GGNNCC 3 cut(s) 7, 709, 735
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 3 cut(s) 154, 209, 240
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 606
BssMI GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 160, 277
Bst6I CTCTTC 1 cut(s) 406
BstDEI CTNAG 5 cut(s) 62, 384, 514, 540, 800
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 1 cut(s) 665
BstKTI GATC 7 cut(s) 149, 169, 217, 235, 573, 658, 760
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
BstMWI GCNNNNNNNGC 5 cut(s) 99, 180, 536, 545, 562
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 487
BstPAI GACNNNNGTC 1 cut(s) 354
BstPI GGTNACC 1 cut(s) 685
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 4 cut(s) 77, 78, 388, 432
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 665
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 4 cut(s) 59, 176, 466, 651
Cfr13I GGNCC 3 cut(s) 6, 38, 734
CseI GACGC 1 cut(s) 758
Csp6I GTAC 1 cut(s) 112
CviAII CATG 3 cut(s) 326, 371, 484
CviJI RGCY 8 cut(s) 152, 183, 362, 390, 450, 530, 609, 816
CviKI_1 RGCY 8 cut(s) 152, 183, 362, 390, 450, 530, 609, 816
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 5 cut(s) 62, 384, 514, 540, 800
DpnI GATC 7 cut(s) 148, 168, 216, 234, 572, 657, 759
DpnII GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
DrdI GACNNNNNNGTC 1 cut(s) 741
DseDI GACNNNNNNGTC 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 3 cut(s) 6, 38, 734
Eco81I CCTNAGG 1 cut(s) 384
Eco91I GGTNACC 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 217
EcoRV GATATC 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 3 cut(s) 329, 374, 487
FaqI GGGAC 3 cut(s) 297, 729, 747
FatI CATG 3 cut(s) 325, 370, 483
FbaI TGATCA 2 cut(s) 166, 570
Fnu4HI GCNGC 4 cut(s) 67, 91, 402, 421
FokI GGATG 1 cut(s) 652
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 4 cut(s) 67, 91, 402, 421
FspBI CTAG 2 cut(s) 180, 726
GluI GCNGC 4 cut(s) 67, 91, 402, 421
GsaI CCCAGC 1 cut(s) 366
HgaI GACGC 1 cut(s) 758
Hin1II CATG 3 cut(s) 329, 374, 487
HincII GTYRAC 1 cut(s) 332
HindII GTYRAC 1 cut(s) 332
HinfI GANTC 5 cut(s) 27, 73, 431, 578, 643
HphI GGTGA 5 cut(s) 176, 177, 437, 612, 697
Hpy166II GTNNAC 2 cut(s) 332, 620
Hpy188I TCNGA 5 cut(s) 46, 138, 535, 575, 821
Hpy188III TCNNGA 3 cut(s) 36, 383, 776
Hpy8I GTNNAC 2 cut(s) 332, 620
HpyAV CCTTC 2 cut(s) 198, 482
HpyCH4III ACNGT 2 cut(s) 160, 277
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 180, 536, 545, 562
HpyF3I CTNAG 5 cut(s) 62, 384, 514, 540, 800
Hsp92II CATG 3 cut(s) 329, 374, 487
Ksp22I TGATCA 2 cut(s) 166, 570
Kzo9I GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
Lsp1109I GCAGC 4 cut(s) 77, 78, 388, 432
LweI GCATC 3 cut(s) 386, 526, 728
MaeI CTAG 2 cut(s) 180, 726
MaeIII GTNAC 1 cut(s) 685
MalI GATC 7 cut(s) 148, 168, 216, 234, 572, 657, 759
MboI GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
MboII GAAGA 5 cut(s) 22, 423, 440, 638, 764
MfeI CAATTG 2 cut(s) 352, 566
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 176, 392
MluCI AATT 4 cut(s) 318, 352, 566, 593
MnlI CCTC 2 cut(s) 379, 679
Mph1103I ATGCAT 1 cut(s) 721
MslI CAYNNNNRTG 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 2 cut(s) 352, 566
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 99, 180, 536, 545, 562
NdeII GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
NlaIII CATG 3 cut(s) 329, 374, 487
NlaIV GGNNCC 3 cut(s) 7, 709, 735
NmuCI GTSAC 1 cut(s) 685
NsiI ATGCAT 1 cut(s) 721
NspI RCATGY 1 cut(s) 487
OliI CACNNNNGTG 1 cut(s) 683
PfeI GAWTC 5 cut(s) 27, 73, 431, 578, 643
PkrI GCNGC 4 cut(s) 68, 92, 403, 422
PpuMI RGGWCCY 1 cut(s) 6
PshAI GACNNNNGTC 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 217
PspEI GGTNACC 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 7, 709, 735
PspPI GGNCC 3 cut(s) 6, 38, 734
PspPPI RGGWCCY 1 cut(s) 6
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 683
SatI GCNGC 4 cut(s) 67, 91, 402, 421
Sau3AI GATC 7 cut(s) 146, 166, 214, 232, 570, 655, 757
Sau96I GGNCC 3 cut(s) 6, 38, 734
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 2 cut(s) 176, 392
SetI ASST 7 cut(s) 185, 190, 364, 532, 625, 713, 818
SfaNI GCATC 3 cut(s) 386, 526, 728
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 3 cut(s) 6, 38, 734
SmiMI CAYNNNNRTG 1 cut(s) 683
SpeI ACTAGT 1 cut(s) 725
Sse9I AATT 4 cut(s) 318, 352, 566, 593
SsiI CCGC 1 cut(s) 423
SspMI CTAG 2 cut(s) 180, 726
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 160, 277
TasI AATT 4 cut(s) 318, 352, 566, 593
TfiI GAWTC 5 cut(s) 27, 73, 431, 578, 643
TscAI CASTG 4 cut(s) 66, 176, 473, 658
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 4 cut(s) 66, 90, 401, 420
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 3 cut(s) 311, 423, 656
TspRI CASTG 4 cut(s) 66, 176, 473, 658
VpaK11BI GGWCC 3 cut(s) 6, 38, 734
XapI RAATTY 1 cut(s) 318
XceI RCATGY 1 cut(s) 487
XspI CTAG 2 cut(s) 180, 726
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.