FvH4_3g38740
ERF Family

Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010747
Physical Location & Seq
Forward (+)
33024160 .. 33030134
5975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38740.t1

Sequence Viewer

Length: 3309 bp
ATGCCGACGCCGGTAGGCGCAGCGAGGCAATGTTTGACGGAGGAGGCGGCGCGTGCGTTGGACGACGCGGTGGCCGTGGCGCGTAGGCGGAGCCACGCCCAGACGACCTCGCTTCATGCTGTTTCGGCTCTGCTTTCACTTCCTTCGTCTGCTCTCCGCGACGCGTGTACACGCGCCAATAGCAGCGCGTACACGCAACGCCTCAAGTTCCGGGCGCTGGAGCTCTGCGTCGGGGTGTCGCTGGACCGGTTGCCGTCGGCGAAGGCGCAAGAGGAGCCGCCGGTGTCGAACTCACTGATGGCGGCGATCAAGAGGTCTCAGGCGAACCAGAGGCGACACCCGGAGAGCTTCCACCTGCACCAGATTCACAGCCAGCAGCAAACGGCGTCGCTTTTGAAGGTGGAGCTCAAACACTTCATTTTGTCGATTCTGGACGACCCGATTGTGAGCCGGGTCTTGGGCGACGCCGGGTTTCGGAGCTGTGACATAAAGCTCGCGATTGTTCACCCGCCCGTGACGCAATCAAATCGATTCTCTCGGGCTCTGGTCCCGCCCATTTTCCTCTGCAATCTAACGGATCCCGACCCGGCCCGTATGAGATTCCCTTTCCCGCTCGCGGGAATCGAGGAGAGGGGAGACGAGAATTGCAAGAGAATCGGGGAGGTGTTAGTTAGAAAGAGCGGGAAGAATCCCTTACTCATCGGCGTAAACGCCGCCGAAGCTCTCGGAAGCTTCATGACAGCTGTACAGAAAGGCAAGTTACCACTCTTGCCTCCTGAAGTTAGTCGGTTTGGTGTAGTCACTCTCGAAAAGGAAATTGCGGAGTTTGTGGTGGACGGTGGGAGTGAAGAGAAGATGAGCTCGAAGCTGAAGGAGGTGAGTCATTTGGCCGAGCAATGTTCCGGGGATGGAGCCGGTGTGATAGTCAATTTTGGCGAAGTGAAGGCTTTGGTTGATGAGGGTGTAGTGAGTGATGCTTTGAGCTTTGTGGTGGTTCAATTGAAGGAGTTGGTTGAGATGCATAGTGGGAAACTGTGGTTGATCGGCGCAGCGGGGAGTAATGACATGTATATGAAGCTTTTGGCTCGGTTTCCGGCCATTGAGAAGGATTGGGACCTTCATCTCCTTCCCATTAGCTCTTCCAAGGCTTCTGTGGATGGAGTTTACTCTAAATCAAGCTTGTTGGGGTCCTTTGTTCCACTTGCGGGATTCTTCTCTGGACCTTCCGACTTTATAAATCCACTGAGCATCACAAATCAATCTTTTATACGCTGTCATCTGTGCACAGAGAAGTATGAGCAAGAAGTTGCTTCTATTTGGAAAGATGGATCAGCCATTACAGTAGGTGATCAGTGCTCAACTAGCTCACCTTCTTGGTTGCAAATGACTGAACTTGACACTGGCAAGGGAGTGGATCTCGTAAAGACCAAAGCTGATAGTACGACATTGAGTGATACAGTATCAGGACTGCAAAGGAAATGGAATGATATCTGCCGAAAAATTCATCATGCTCAATCATTCCCTAACATGGACAATTGTCATGCTGGGTCTCATGGTGCATCTCCTGAGGGCTCTCACATTGCTGCAGATAGAAGAGAAAGCAGTGGTGAAGATTCATCTATGCAGGAAAACCAAAGTGCAAAATATCTCTGCCTTCAGATGGACAGGCAGAAGAGTTTTCTTTCAAAACAAAAGTTACTAATGCAAGTAGCTTCTGATGCTGAAAATGCTGGTACACAAACCAAGCAATTAGTTATAGATTCAAATGGTCAGCAACTTGAACTGGGAAGCCCCTGCCGTTCACCTTTTCCTATCGTCACTATGAATCTTGCCACTGATCGCACGTCATCCTCAACTGTAACTTCAGTGACTACAGATTTAGGATTGGGAACCTTATATGCATCAACTAGTCAGGGACCAAGCAATCCCAAGTTACAAGATCATAGAGAGTGTCGCCAACGCCTCTCTGGTTCCGTTTCTGCTGAATTCGATGCAGTAAGTGACAATAGTTTACATCAAATAACCCAGTCCTCTTCCTGCTCTGGATCTAATTTTGGTGGGCAGTTTGATCCAAGAGATATCAAGTCACTTAGGAGAGTTCTCACAGAAAAGGTTGGCTGGCAAGATGAAGCAATATGCACCATTAGTCAAGCTATATCCCGTTGCACGTCTGGTGGTGGAAGGCATCGTGGTTCAAAAGTCAGAGAAGATATATGGCTGACTTTGGTTGGACCCGACAGAGTTGGAAAGAAGAAAATCGCTGTAGCACTTGCCGAGCTTATGTTTGGCACTAGGGAAAGCTTAATCTCTGTTGACATGGGAGAGAGGGGATGTGATTCTGACTCTATTTTTCAATGGGAATCCCAAGATGATTATGATGTGAAGTTTAGGGGTAAGACGGCTGTAGATTATGTTGCCGGGGAATTAAGCAGGAGACCCCATTCAGTTGTCTTCCTTGAAAATGTAGATAAGGCTGATTTTCTGGCCCAAAGTAACTTGTCCCAGGCCATTAGGTCTGGCAAGTTTCCAGACTCTCATGGCAGAGAAATCAGCATTAACAACATGATCTTTGTGATGACTTCAGCTACTAAAAAGGGCAGCAAAATCCAGTACTTGGAGAATGAACCCCTGAAATTCTCAGAGGAGATGGTACTTGGTGCCAAGAGGTATCAAATGCACATAGTGAATATTGGGGATGCCAACCAAATGAAGGGTGTGAATGTGAGGATTGCATCAAGGGAAGGAACCTTAAACTCATCTTCTGTAAATAAGAGAAAGCTGATTGACAGCAGTGCCGCCATAGAGGAAACCTCAGAGTTACAGAAACGGGGCAACAAGGCATCAAGGTCCTTTCTGGATCTGAATCTGCCTGTTGAAGAGATAGATGAGGGAATGAATTGTGGAGACTATGACAGTGACTCCATCTCCGAAAACTCAGAAGCTTGGATGGAAGACTTCCTTGATCAAGTAGATGAAACAGTGGTTTTAAAGCCATTCAACTTCGATGCTCTTGCTGAGAAAATAGTGAAGGAAATCAACCAAGAATTTAAGAAAGTCTACGGACCTGAGGATCAGCTGGAGATCGACTCCAGAGTCATGATTCAGTTACTTGCAGCTTGTTGGTTATCAGACAAGAAGAGAGCATTGGAGGATTGGATTGAACAGGTTCTCTCCATAAGCCTTGCTGAAGCACGTCAGAGGTATCGTCTCACTGCTCATTCTGTAATAAAATTGGTTGCCGGTGGAGCACTTTCGGTGCAAGAGCAAACTGCCGGTGTTTGCCTTCCTGCTAGAATTAGTCTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347
KEGG Pathways
Metabolic & Signaling
ko04213 map04213
Pfam Domains
Protein Families
AAA_2 Clp_N

Protein Analysis

1103

Amino Acids

120.67

Weight (kDa)

6.02

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 12 - 113 3.8e-06 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 213 - 383 1.1e-15 SMAX1 nucleotide binding domain
AAA_2 PF07724 740 - 871 6.8e-15 AAA domain (Cdc48 subfamily)
AAA_lid_SMAX1 PF26587 1000 - 1080 6.5e-29 SMAX1-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07200 AT1G07200 AT2G29970
fragaria_vesca FvH4_3g38740
malus_domestica MD03G1068500.v1.1 MD11G1072900.v1.1
prunus_persica Prupe.6G056400_v2.0.a1
pyrus_communis pycom03g05500 pycom11g06060
rosa_chinensis RchiOBHm_Chr5g0069891
rosa_laevigata RLG00000036105
rosa_multiflora Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001
rosa_roxburghii Rroxscaffold_1G00011170
rosa_rugosa Rorug05G0400500
rosa_samantha Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300
rosa_wichuraiana Rw5G042720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1235
AarI CACCTGC 1 cut(s) 363
AasI GACNNNNNNGTC 1 cut(s) 3092
Acc36I ACCTGC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 2657
AccB7I CCANNNNNTGG 1 cut(s) 2614
AccBSI CCGCTC 2 cut(s) 613, 681
AccI GTMKAC 1 cut(s) 3057
AccII CGCG 9 cut(s) 52, 68, 82, 159, 164, 174, 188, 497, 617
AclWI GGATC 8 cut(s) 572, 585, 1336, 1422, 2053, 2063, 2865, 3078
AcoI YGGCCR 3 cut(s) 72, 888, 1095
AcsI RAATTY 4 cut(s) 1500, 1985, 2633, 3044
AcuI CTGAAG 6 cut(s) 798, 890, 1640, 1848, 2565, 3207
AcyI GRCGYC 3 cut(s) 8, 386, 465
AdeI CACNNNGTG 1 cut(s) 2683
AfaI GTAC 7 cut(s) 169, 191, 747, 1441, 1735, 2612, 2652
AflIII ACRYGT 2 cut(s) 162, 1065
AgeI ACCGGT 1 cut(s) 246
AhlI ACTAGT 1 cut(s) 1907
AjiI CACGTC 3 cut(s) 1845, 2169, 3194
AjnI CCWGG 1 cut(s) 2502
AjuI GAANNNNNNNTTGG 2 cut(s) 3128, 3160
Alw21I GWGCWC 6 cut(s) 225, 408, 863, 1286, 1358, 3250
Alw26I GTCTC 6 cut(s) 321, 630, 1554, 2428, 2898, 3212
Alw44I GTGCAC 1 cut(s) 1282
AlwI GGATC 8 cut(s) 572, 585, 1336, 1422, 2053, 2063, 2865, 3078
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 6 cut(s) 72, 588, 888, 1095, 2484, 2505
ApaLI GTGCAC 1 cut(s) 1282
ApeKI GCWGC 7 cut(s) 20, 183, 376, 1049, 1583, 2598, 3113
ApoI RAATTY 4 cut(s) 1500, 1985, 2633, 3044
AsiGI ACCGGT 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 3165
AspLEI GCGC 8 cut(s) 20, 52, 82, 176, 188, 217, 268, 1049
AsuC2I CCSGG 7 cut(s) 212, 341, 452, 469, 587, 904, 2419
AsuHPI GGTGA 6 cut(s) 497, 889, 1358, 1359, 1619, 1794
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 9 cut(s) 244, 547, 1114, 1188, 1220, 1916, 2231, 2847, 3062
AxyI CCTNAGG 2 cut(s) 1566, 3066
BaeGI GKGCMC 1 cut(s) 1286
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 2657
BanII GRGCYC 5 cut(s) 225, 408, 544, 863, 1574
BbsI GAAGAC 2 cut(s) 2443, 2958
Bbv12I GWGCWC 6 cut(s) 225, 408, 863, 1286, 1358, 3250
BbvI GCAGC 7 cut(s) 32, 195, 388, 1061, 1570, 2610, 3125
BccI CCATC 8 cut(s) 292, 902, 1151, 1319, 1654, 2641, 2930, 2941
BceAI ACGGC 5 cut(s) 59, 238, 399, 1782, 2415
BcgI CGANNNNNNTGC 6 cut(s) 509, 543, 637, 671, 2993, 3027
BciT130I CCWGG 1 cut(s) 2504
BclI TGATCA 2 cut(s) 1348, 2962
BcnI CCSGG 7 cut(s) 212, 341, 452, 469, 587, 904, 2419
BcoDI GTCTC 6 cut(s) 321, 630, 1554, 2428, 2898, 3212
BcuI ACTAGT 1 cut(s) 1907
BfaI CTAG 4 cut(s) 1362, 1908, 2292, 3291
BfmI CTRYAG 4 cut(s) 1584, 1872, 2262, 2403
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 363
BmcAI AGTACT 1 cut(s) 2612
Bme1390I CCNGG 8 cut(s) 212, 341, 452, 469, 587, 904, 2419, 2504
Bme18I GGWCC 9 cut(s) 244, 547, 1114, 1188, 1220, 1916, 2231, 2847, 3062
BmeT110I CYCGRG 1 cut(s) 537
BmgBI CACGTC 3 cut(s) 1845, 2169, 3194
BmrFI CCNGG 8 cut(s) 212, 341, 452, 469, 587, 904, 2419, 2504
BmrI ACTGGG 2 cut(s) 1793, 2020
BmuI ACTGGG 2 cut(s) 1793, 2020
BoxI GACNNNNGTC 1 cut(s) 1536
BpiI GAAGAC 2 cut(s) 2443, 2958
BplI GAGNNNNNCTC 6 cut(s) 1401, 1433, 2795, 2827, 3071, 3103
BpmI CTGGAG 3 cut(s) 239, 3073, 3098
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 7 cut(s) 212, 341, 452, 469, 587, 904, 2419
Bsa29I ATCGAT 1 cut(s) 529
BsaBI GATNNNNATC 1 cut(s) 2862
BsaHI GRCGYC 3 cut(s) 8, 386, 465
BsaI GGTCTC 3 cut(s) 321, 1554, 2428
BsaJI CCNNGG 5 cut(s) 75, 903, 1143, 2418, 2502
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 6 cut(s) 903, 933, 2903, 2909, 2933, 2939
Bse118I RCCGGY 6 cut(s) 10, 246, 280, 914, 3239, 3272
Bse1I ACTGG 4 cut(s) 1405, 1788, 2026, 2608
Bse21I CCTNAGG 2 cut(s) 1566, 3066
Bse3DI GCAATG 3 cut(s) 35, 902, 1578
Bse8I GATNNNNATC 1 cut(s) 2862
BseBI CCWGG 1 cut(s) 2504
BseCI ATCGAT 1 cut(s) 529
BseDI CCNNGG 5 cut(s) 75, 903, 1143, 2418, 2502
BseGI GGATG 6 cut(s) 913, 1162, 1847, 2336, 2701, 2952
BseJI GATNNNNATC 1 cut(s) 2862
BseMI GCAATG 3 cut(s) 35, 902, 1578
BseMII CTCAG 8 cut(s) 332, 1235, 1557, 2652, 2826, 2949, 3006, 3057
BseNI ACTGG 4 cut(s) 1405, 1788, 2026, 2608
BseRI GAGGAG 4 cut(s) 56, 287, 641, 2657
BseSI GKGCMC 1 cut(s) 1286
BseXI GCAGC 7 cut(s) 32, 195, 388, 1061, 1570, 2610, 3125
BseYI CCCAGC 1 cut(s) 1544
BsgI GTGCAG 1 cut(s) 341
Bsh1236I CGCG 9 cut(s) 52, 68, 82, 159, 164, 174, 188, 497, 617
BshFI GGCC 6 cut(s) 74, 590, 890, 1097, 2486, 2507
BshNI GGYRCC 1 cut(s) 2657
BshTI ACCGGT 1 cut(s) 246
BshVI ATCGAT 1 cut(s) 529
BsiHKAI GWGCWC 6 cut(s) 225, 408, 863, 1286, 1358, 3250
BsiHKCI CYCGRG 1 cut(s) 537
BslFI GGGAC 4 cut(s) 533, 1127, 1929, 2485
BsmAI GTCTC 6 cut(s) 321, 630, 1554, 2428, 2898, 3212
BsmBI CGTCTC 2 cut(s) 630, 3212
BsmFI GGGAC 4 cut(s) 533, 1127, 1929, 2485
BsnI GGCC 6 cut(s) 74, 590, 890, 1097, 2486, 2507
Bso31I GGTCTC 3 cut(s) 321, 1554, 2428
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 8 cut(s) 225, 408, 544, 863, 1286, 1358, 1574, 3250
Bsp1407I TGTACA 2 cut(s) 167, 745
Bsp68I TCGCGA 1 cut(s) 497
BspANI GGCC 6 cut(s) 74, 590, 890, 1097, 2486, 2507
BspCNI CTCAG 8 cut(s) 331, 1236, 1558, 2651, 2825, 2948, 3007, 3058
BspDI ATCGAT 1 cut(s) 529
BspFNI CGCG 9 cut(s) 52, 68, 82, 159, 164, 174, 188, 497, 617
BspHI TCATGA 2 cut(s) 735, 3096
BspMAI CTGCAG 1 cut(s) 1588
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 8 cut(s) 572, 585, 1336, 1422, 2053, 2063, 2865, 3078
BspQI GCTCTTC 1 cut(s) 1144
BspT107I GGYRCC 1 cut(s) 2657
BspTNI GGTCTC 3 cut(s) 321, 1554, 2428
BsrBI CCGCTC 2 cut(s) 613, 681
BsrDI GCAATG 3 cut(s) 35, 902, 1578
BsrFI RCCGGY 6 cut(s) 10, 246, 280, 914, 3239, 3272
BsrGI TGTACA 2 cut(s) 167, 745
BsrI ACTGG 4 cut(s) 1405, 1788, 2026, 2608
BssAI RCCGGY 6 cut(s) 10, 246, 280, 914, 3239, 3272
BssECI CCNNGG 5 cut(s) 75, 903, 1143, 2418, 2502
BssNI GRCGYC 3 cut(s) 8, 386, 465
BssT1I CCWWGG 1 cut(s) 1143
Bst2UI CCWGG 1 cut(s) 2504
Bst4CI ACNGT 7 cut(s) 839, 1035, 1342, 1459, 1858, 2915, 2980
Bst6I CTCTTC 7 cut(s) 843, 1144, 1588, 1667, 2038, 2871, 3131
BstACI GRCGYC 3 cut(s) 8, 386, 465
BstAUI TGTACA 2 cut(s) 167, 745
BstC8I GCNNGC 5 cut(s) 54, 374, 495, 615, 2120
BstDEI CTNAG 9 cut(s) 318, 1244, 1566, 2090, 2638, 2812, 2935, 3015, 3066
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 6 cut(s) 913, 1162, 1847, 2336, 2701, 2952
BstFNI CGCG 9 cut(s) 52, 68, 82, 159, 164, 174, 188, 497, 617
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 8 cut(s) 20, 52, 82, 176, 188, 217, 268, 1049
BstMAI GTCTC 6 cut(s) 321, 630, 1554, 2428, 2898, 3212
BstNI CCWGG 1 cut(s) 2504
BstNSI RCATGY 1 cut(s) 1069
BstPAI GACNNNNGTC 1 cut(s) 1536
BstSCI CCNGG 8 cut(s) 210, 339, 450, 467, 585, 902, 2417, 2502
BstSFI CTRYAG 4 cut(s) 1584, 1872, 2262, 2403
BstSLI GKGCMC 1 cut(s) 1286
BstUI CGCG 9 cut(s) 52, 68, 82, 159, 164, 174, 188, 497, 617
BstV1I GCAGC 7 cut(s) 32, 195, 388, 1061, 1570, 2610, 3125
BstV2I GAAGAC 2 cut(s) 2443, 2958
BstX2I RGATCY 4 cut(s) 577, 1414, 2045, 2857
BstYI RGATCY 4 cut(s) 577, 1414, 2045, 2857
Bsu15I ATCGAT 1 cut(s) 529
Bsu36I CCTNAGG 2 cut(s) 1566, 3066
BsuRI GGCC 6 cut(s) 74, 590, 890, 1097, 2486, 2507
BsuTUI ATCGAT 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 3 cut(s) 1845, 2169, 3194
BtsCI GGATG 6 cut(s) 913, 1162, 1847, 2336, 2701, 2952
BtsI GCAGTG 3 cut(s) 1609, 2797, 3210
BtuMI TCGCGA 1 cut(s) 497
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 5 cut(s) 54, 374, 495, 615, 2120
CciI TCATGA 2 cut(s) 735, 3096
CfoI GCGC 8 cut(s) 20, 52, 82, 176, 188, 217, 268, 1049
Cfr10I RCCGGY 6 cut(s) 10, 246, 280, 914, 3239, 3272
ClaI ATCGAT 1 cut(s) 529
CseI GACGC 7 cut(s) 16, 74, 170, 217, 375, 473, 526
Csp6I GTAC 7 cut(s) 168, 190, 746, 1440, 1734, 2611, 2651
CspAI ACCGGT 1 cut(s) 246
CviQI GTAC 7 cut(s) 168, 190, 746, 1440, 1734, 2611, 2651
DdeI CTNAG 9 cut(s) 318, 1244, 1566, 2090, 2638, 2812, 2935, 3015, 3066
DraI TTTAAA 1 cut(s) 2988
DraIII CACNNNGTG 1 cut(s) 2683
DrdI GACNNNNNNGTC 1 cut(s) 3092
DseDI GACNNNNNNGTC 1 cut(s) 3092
EaeI YGGCCR 3 cut(s) 72, 888, 1095
Eam1104I CTCTTC 7 cut(s) 843, 1144, 1588, 1667, 2038, 2871, 3131
EarI CTCTTC 7 cut(s) 843, 1144, 1588, 1667, 2038, 2871, 3131
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 3 cut(s) 223, 406, 861
Eco130I CCWWGG 1 cut(s) 1143
Eco24I GRGCYC 5 cut(s) 225, 408, 544, 863, 1574
Eco31I GGTCTC 3 cut(s) 321, 1554, 2428
Eco32I GATATC 2 cut(s) 1489, 2080
Eco47I GGWCC 9 cut(s) 244, 547, 1114, 1188, 1220, 1916, 2231, 2847, 3062
Eco53kI GAGCTC 3 cut(s) 223, 406, 861
Eco57I CTGAAG 6 cut(s) 798, 890, 1640, 1848, 2565, 3207
Eco81I CCTNAGG 2 cut(s) 1566, 3066
Eco88I CYCGRG 1 cut(s) 537
EcoICRI GAGCTC 3 cut(s) 223, 406, 861
EcoO109I RGGNCCY 3 cut(s) 1114, 1188, 2847
EcoRI GAATTC 1 cut(s) 1985
EcoRII CCWGG 1 cut(s) 2502
EcoRV GATATC 2 cut(s) 1489, 2080
EcoT14I CCWWGG 1 cut(s) 1143
EcoT22I ATGCAT 2 cut(s) 1023, 1903
EcoT38I GRGCYC 5 cut(s) 225, 408, 544, 863, 1574
ErhI CCWWGG 1 cut(s) 1143
Esp3I CGTCTC 2 cut(s) 630, 3212
FalI AAGNNNNNCTT 4 cut(s) 677, 709, 2943, 2975
FaqI GGGAC 4 cut(s) 533, 1127, 1929, 2485
FauI CCCGC 7 cut(s) 516, 558, 610, 618, 674, 1045, 1198
FbaI TGATCA 2 cut(s) 1348, 2962
FblI GTMKAC 1 cut(s) 3057
FokI GGATG 6 cut(s) 920, 1169, 1834, 2343, 2708, 2959
FriOI GRGCYC 5 cut(s) 225, 408, 544, 863, 1574
FspBI CTAG 4 cut(s) 1362, 1908, 2292, 3291
GlaI GCGC 8 cut(s) 19, 51, 81, 175, 187, 216, 267, 1048
GsaI CCCAGC 1 cut(s) 1548
GsuI CTGGAG 3 cut(s) 239, 3073, 3098
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 6 cut(s) 74, 590, 890, 1097, 2486, 2507
HgaI GACGC 7 cut(s) 16, 74, 170, 217, 375, 473, 526
HhaI GCGC 8 cut(s) 20, 52, 82, 176, 188, 217, 268, 1049
Hin1I GRCGYC 3 cut(s) 8, 386, 465
Hin6I GCGC 8 cut(s) 18, 50, 80, 174, 186, 215, 266, 1047
HinP1I GCGC 8 cut(s) 18, 50, 80, 174, 186, 215, 266, 1047
HincII GTYRAC 1 cut(s) 2314
HindII GTYRAC 1 cut(s) 2314
HindIII AAGCTT 5 cut(s) 730, 1076, 1177, 2299, 2940
HphI GGTGA 6 cut(s) 497, 889, 1358, 1359, 1619, 1794
Hpy99I CGWCG 7 cut(s) 10, 68, 164, 233, 259, 391, 467
HpyCH4III ACNGT 7 cut(s) 839, 1035, 1342, 1459, 1858, 2915, 2980
HpyCH4IV ACGT 3 cut(s) 1844, 2168, 3193
HpyF3I CTNAG 9 cut(s) 318, 1244, 1566, 2090, 2638, 2812, 2935, 3015, 3066
HpySE526I ACGT 3 cut(s) 1844, 2168, 3193
Hsp92I GRCGYC 3 cut(s) 8, 386, 465
HspAI GCGC 8 cut(s) 18, 50, 80, 174, 186, 215, 266, 1047
Ksp22I TGATCA 2 cut(s) 1348, 2962
LguI GCTCTTC 1 cut(s) 1144
LmnI GCTCC 7 cut(s) 90, 220, 274, 403, 477, 911, 3245
Lsp1109I GCAGC 7 cut(s) 32, 195, 388, 1061, 1570, 2610, 3125
MaeI CTAG 4 cut(s) 1362, 1908, 2292, 3291
MaeII ACGT 3 cut(s) 1844, 2168, 3193
MbiI CCGCTC 2 cut(s) 613, 681
MfeI CAATTG 2 cut(s) 998, 1534
MflI RGATCY 4 cut(s) 577, 1414, 2045, 2857
MhlI GDGCHC 8 cut(s) 225, 408, 544, 863, 1286, 1358, 1574, 3250
MluI ACGCGT 1 cut(s) 162
MlyI GAGTC 6 cut(s) 889, 2336, 2525, 2912, 3080, 3102
MmeI TCCRAC 4 cut(s) 39, 1251, 2209, 2224
Mph1103I ATGCAT 2 cut(s) 1023, 1903
MroXI GAANNNNTTC 1 cut(s) 3165
MseI TTAA 6 cut(s) 2303, 2426, 2556, 2750, 2987, 3048
MslI CAYNNNNRTG 1 cut(s) 1070
MspA1I CMGCKG 3 cut(s) 743, 1052, 3076
MspR9I CCNGG 8 cut(s) 212, 341, 452, 469, 587, 904, 2419, 2504
MunI CAATTG 2 cut(s) 998, 1534
MvaI CCWGG 1 cut(s) 2504
MvnI CGCG 9 cut(s) 52, 68, 82, 159, 164, 174, 188, 497, 617
NciI CCSGG 7 cut(s) 212, 341, 452, 469, 587, 904, 2419
NmeAIII GCCGAG 2 cut(s) 916, 2299
NmuCI GTSAC 8 cut(s) 482, 514, 799, 1816, 1867, 2000, 2085, 2915
NruI TCGCGA 1 cut(s) 497
NsiI ATGCAT 2 cut(s) 1023, 1903
NspI RCATGY 1 cut(s) 1069
PagI TCATGA 2 cut(s) 735, 3096
PaqCI CACCTGC 1 cut(s) 363
PciI ACATGT 1 cut(s) 1065
PciSI GCTCTTC 1 cut(s) 1144
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 621
PdmI GAANNNNTTC 1 cut(s) 3165
PflMI CCANNNNNTGG 1 cut(s) 2614
PinAI ACCGGT 1 cut(s) 246
PleI GAGTC 6 cut(s) 888, 2336, 2525, 2912, 3080, 3101
PpsI GAGTC 6 cut(s) 888, 2336, 2525, 2912, 3080, 3101
PpuMI RGGWCCY 3 cut(s) 1114, 1188, 2847
PscI ACATGT 1 cut(s) 1065
PshAI GACNNNNGTC 1 cut(s) 1536
PsiI TTATAA 1 cut(s) 1235
Psp124BI GAGCTC 3 cut(s) 225, 408, 863
Psp5II RGGWCCY 3 cut(s) 1114, 1188, 2847
Psp6I CCWGG 1 cut(s) 2502
PspFI CCCAGC 1 cut(s) 1544
PspGI CCWGG 1 cut(s) 2502
PspPPI RGGWCCY 3 cut(s) 1114, 1188, 2847
PstI CTGCAG 1 cut(s) 1588
PsuI RGATCY 4 cut(s) 577, 1414, 2045, 2857
PvuII CAGCTG 2 cut(s) 743, 3076
RruI TCGCGA 1 cut(s) 497
RsaI GTAC 7 cut(s) 169, 191, 747, 1441, 1735, 2612, 2652
RsaNI GTAC 7 cut(s) 168, 190, 746, 1440, 1734, 2611, 2651
RseI CAYNNNNRTG 1 cut(s) 1070
SacI GAGCTC 3 cut(s) 225, 408, 863
SapI GCTCTTC 1 cut(s) 1144
SaqAI TTAA 6 cut(s) 2303, 2426, 2556, 2750, 2987, 3048
ScaI AGTACT 1 cut(s) 2612
SchI GAGTC 6 cut(s) 889, 2336, 2525, 2912, 3080, 3102
ScrFI CCNGG 8 cut(s) 212, 341, 452, 469, 587, 904, 2419, 2504
SduI GDGCHC 8 cut(s) 225, 408, 544, 863, 1286, 1358, 1574, 3250
SfcI CTRYAG 4 cut(s) 1584, 1872, 2262, 2403
SgrAI CRCCGGYG 1 cut(s) 280
SinI GGWCC 9 cut(s) 244, 547, 1114, 1188, 1220, 1916, 2231, 2847, 3062
SmiMI CAYNNNNRTG 1 cut(s) 1070
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 1907
SspI AATATT 1 cut(s) 2689
SspMI CTAG 4 cut(s) 1362, 1908, 2292, 3291
SstI GAGCTC 3 cut(s) 225, 408, 863
StyD4I CCNGG 8 cut(s) 210, 339, 450, 467, 585, 902, 2417, 2502
StyI CCWWGG 1 cut(s) 1143
TaaI ACNGT 7 cut(s) 839, 1035, 1342, 1459, 1858, 2915, 2980
TaiI ACGT 3 cut(s) 1847, 2171, 3196
TaqI TCGA 9 cut(s) 287, 425, 529, 624, 807, 863, 1989, 3003, 3084
TatI WGTACW 3 cut(s) 167, 745, 2610
TauI GCSGC 5 cut(s) 50, 280, 305, 716, 2798
Tru1I TTAA 6 cut(s) 2303, 2426, 2556, 2750, 2987, 3048
Tru9I TTAA 6 cut(s) 2303, 2426, 2556, 2750, 2987, 3048
TseFI GTSAC 8 cut(s) 482, 514, 799, 1816, 1867, 2000, 2085, 2915
TseI GCWGC 7 cut(s) 20, 183, 376, 1049, 1583, 2598, 3113
Tsp45I GTSAC 8 cut(s) 482, 514, 799, 1816, 1867, 2000, 2085, 2915
TspGWI ACGGA 4 cut(s) 53, 590, 1963, 3075
Van91I CCANNNNNTGG 1 cut(s) 2614
VneI GTGCAC 1 cut(s) 1282
VpaK11BI GGWCC 9 cut(s) 244, 547, 1114, 1188, 1220, 1916, 2231, 2847, 3062
XapI RAATTY 4 cut(s) 1500, 1985, 2633, 3044
XceI RCATGY 1 cut(s) 1069
XcmI CCANNNNNNNNNTGG 2 cut(s) 1150, 1964
XmiI GTMKAC 1 cut(s) 3057
XmnI GAANNNNTTC 1 cut(s) 3165
XspI CTAG 4 cut(s) 1362, 1908, 2292, 3291
ZrmI AGTACT 1 cut(s) 2612
Zsp2I ATGCAT 2 cut(s) 1023, 1903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.