Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07200 AT1G07200 AT2G29970 |
| fragaria_vesca | FvH4_3g38740 |
| malus_domestica | MD03G1068500.v1.1 MD11G1072900.v1.1 |
| prunus_persica | Prupe.6G056400_v2.0.a1 |
| pyrus_communis | pycom03g05500 pycom11g06060 |
| rosa_chinensis | RchiOBHm_Chr5g0069891 |
| rosa_laevigata | RLG00000036105 |
| rosa_multiflora | Rmu_co8209630.1_g000001 Rmu_sc0030143.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00011170 |
| rosa_rugosa | Rorug05G0400500 |
| rosa_samantha | Rh5AG457600 Rh5BG476400 Rh5CG500200 Rh5DG488300 |
| rosa_wichuraiana | Rw5G042720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 363 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 90, 1923, 2798 |
| AatII | GACGTC | 1 cut(s) | 110 |
| Acc16I | TGCGCA | 1 cut(s) | 169 |
| Acc36I | ACCTGC | 1 cut(s) | 363 |
| AccB1I | GGYRCC | 1 cut(s) | 546 |
| AccBSI | CCGCTC | 1 cut(s) | 678 |
| AccII | CGCG | 5 cut(s) | 68, 174, 188, 287, 497 |
| AccIII | TCCGGA | 1 cut(s) | 899 |
| AcoI | YGGCCR | 1 cut(s) | 2511 |
| AcsI | RAATTY | 4 cut(s) | 1158, 1380, 1985, 2347 |
| AcuI | CTGAAG | 2 cut(s) | 586, 2928 |
| AcvI | CACGTG | 2 cut(s) | 53, 2974 |
| AcyI | GRCGYC | 5 cut(s) | 8, 107, 162, 386, 1960 |
| AdeI | CACNNNGTG | 1 cut(s) | 1822 |
| AfaI | GTAC | 4 cut(s) | 191, 744, 1067, 3209 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 474, 617, 1202, 1525, 2331, 2332, 2716, 2747 |
| AflIII | ACRYGT | 1 cut(s) | 660 |
| AgeI | ACCGGT | 1 cut(s) | 3218 |
| AhlI | ACTAGT | 2 cut(s) | 782, 1907 |
| AjiI | CACGTC | 2 cut(s) | 661, 3200 |
| AjnI | CCWGG | 4 cut(s) | 595, 1213, 2291, 2460 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 992, 1024, 1380, 1412 |
| AleI | CACNNNNGTG | 1 cut(s) | 1865 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2176, 2208 |
| Alw21I | GWGCWC | 4 cut(s) | 217, 408, 1283, 1355 |
| Alw26I | GTCTC | 9 cut(s) | 76, 127, 241, 321, 2434, 2529, 2806, 2879, 3311 |
| Alw44I | GTGCAC | 1 cut(s) | 1279 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1343 |
| Ama87I | CYCGRG | 1 cut(s) | 1572 |
| Aor13HI | TCCGGA | 1 cut(s) | 899 |
| ApaI | GGGCCC | 1 cut(s) | 624 |
| ApaLI | GTGCAC | 1 cut(s) | 1279 |
| ApoI | RAATTY | 4 cut(s) | 1158, 1380, 1985, 2347 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1531, 1563, 1861, 1893 |
| AsiGI | ACCGGT | 1 cut(s) | 3218 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3171 |
| AspLEI | GCGC | 4 cut(s) | 20, 170, 176, 188 |
| AsuC2I | CCSGG | 4 cut(s) | 469, 529, 587, 619 |
| AvaI | CYCGRG | 1 cut(s) | 1572 |
| AvaII | GGWCC | 6 cut(s) | 583, 1185, 1217, 1916, 2835, 2853 |
| BaeGI | GKGCMC | 3 cut(s) | 551, 624, 1283 |
| BalI | TGGCCA | 1 cut(s) | 2513 |
| BamHI | GGATCC | 2 cut(s) | 2321, 3068 |
| BanI | GGYRCC | 1 cut(s) | 546 |
| BanII | GRGCYC | 6 cut(s) | 217, 408, 624, 1571, 1793, 2634 |
| BbrPI | CACGTG | 2 cut(s) | 53, 2974 |
| BbsI | GAAGAC | 1 cut(s) | 633 |
| Bbv12I | GWGCWC | 4 cut(s) | 217, 408, 1283, 1355 |
| BbvCI | CCTCAGC | 1 cut(s) | 2587 |
| BccI | CCATC | 5 cut(s) | 827, 847, 1125, 1174, 1580 |
| BceAI | ACGGC | 6 cut(s) | 127, 238, 399, 725, 1562, 2030 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 94, 128, 1648, 1682 |
| BciT130I | CCWGG | 4 cut(s) | 597, 1215, 2293, 2462 |
| BclI | TGATCA | 3 cut(s) | 1345, 1432, 2968 |
| BcnI | CCSGG | 4 cut(s) | 469, 529, 587, 619 |
| BcoDI | GTCTC | 9 cut(s) | 76, 127, 241, 321, 2434, 2529, 2806, 2879, 3311 |
| BcuI | ACTAGT | 2 cut(s) | 782, 1907 |
| BfaI | CTAG | 7 cut(s) | 783, 1415, 1731, 1908, 1929, 1955, 3297 |
| BfmI | CTRYAG | 3 cut(s) | 1466, 1651, 3178 |
| BfuAI | ACCTGC | 1 cut(s) | 363 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 134 |
| BglII | AGATCT | 1 cut(s) | 2168 |
| BlpI | GCTNAGC | 1 cut(s) | 888 |
| Bme1390I | CCNGG | 8 cut(s) | 469, 529, 587, 597, 619, 1215, 2293, 2462 |
| Bme18I | GGWCC | 6 cut(s) | 583, 1185, 1217, 1916, 2835, 2853 |
| BmeT110I | CYCGRG | 1 cut(s) | 1572 |
| BmgBI | CACGTC | 2 cut(s) | 661, 3200 |
| BmrFI | CCNGG | 8 cut(s) | 469, 529, 587, 597, 619, 1215, 2293, 2462 |
| BmrI | ACTGGG | 3 cut(s) | 1732, 2020, 3273 |
| BmsI | GCATC | 9 cut(s) | 34, 346, 568, 981, 1565, 1692, 1910, 1981, 3001 |
| BmuI | ACTGGG | 3 cut(s) | 1732, 2020, 3273 |
| BoxI | GACNNNNGTC | 1 cut(s) | 11 |
| BpiI | GAAGAC | 1 cut(s) | 633 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 82, 114, 881, 913 |
| BpmI | CTGGAG | 2 cut(s) | 188, 3104 |
| Bpu10I | CCTNAGC | 2 cut(s) | 267, 2587 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 888 |
| BpuEI | CTTGAG | 4 cut(s) | 239, 392, 707, 2740 |
| BpuMI | CCSGG | 4 cut(s) | 469, 529, 587, 619 |
| Bsa29I | ATCGAT | 1 cut(s) | 247 |
| BsaAI | YACGTR | 2 cut(s) | 53, 2974 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1110, 1116, 1533, 2868 |
| BsaHI | GRCGYC | 5 cut(s) | 8, 107, 162, 386, 1960 |
| BsaI | GGTCTC | 2 cut(s) | 321, 2434 |
| BsaJI | CCNNGG | 4 cut(s) | 240, 536, 2292, 3072 |
| BsaWI | WCCGGW | 3 cut(s) | 280, 899, 3218 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2158, 2188 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 474, 617, 1202, 1525, 2331, 2332, 2716, 2747 |
| Bse118I | RCCGGY | 4 cut(s) | 10, 511, 769, 3218 |
| Bse1I | ACTGG | 7 cut(s) | 205, 1738, 2026, 2341, 2527, 2876, 3279 |
| Bse3DI | GCAATG | 1 cut(s) | 35 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1110, 1116, 1533, 2868 |
| BseAI | TCCGGA | 1 cut(s) | 899 |
| BseBI | CCWGG | 4 cut(s) | 597, 1215, 2293, 2462 |
| BseCI | ATCGAT | 1 cut(s) | 247 |
| BseDI | CCNNGG | 4 cut(s) | 240, 536, 2292, 3072 |
| BseGI | GGATG | 7 cut(s) | 49, 277, 337, 583, 1591, 2707, 2983 |
| BseJI | GATNNNNATC | 4 cut(s) | 1110, 1116, 1533, 2868 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 474, 617, 1202, 1525, 2331, 2332, 2716, 2747 |
| BseMI | GCAATG | 1 cut(s) | 35 |
| BseNI | ACTGG | 7 cut(s) | 205, 1738, 2026, 2341, 2527, 2876, 3279 |
| BseRI | GAGGAG | 4 cut(s) | 103, 860, 2663, 2897 |
| BseSI | GKGCMC | 3 cut(s) | 551, 624, 1283 |
| BseYI | CCCAGC | 2 cut(s) | 1562, 3122 |
| BsgI | GTGCAG | 3 cut(s) | 98, 341, 3098 |
| Bsh1236I | CGCG | 5 cut(s) | 68, 174, 188, 287, 497 |
| Bsh1285I | CGRYCG | 1 cut(s) | 285 |
| BshNI | GGYRCC | 1 cut(s) | 546 |
| BshTI | ACCGGT | 1 cut(s) | 3218 |
| BshVI | ATCGAT | 1 cut(s) | 247 |
| BsiEI | CGRYCG | 1 cut(s) | 285 |
| BsiHKAI | GWGCWC | 4 cut(s) | 217, 408, 1283, 1355 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1572 |
| BslFI | GGGAC | 3 cut(s) | 1719, 1903, 1929 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 474, 617, 1202, 1525, 2331, 2332, 2716, 2747 |
| BsmAI | GTCTC | 9 cut(s) | 76, 127, 241, 321, 2434, 2529, 2806, 2879, 3311 |
| BsmBI | CGTCTC | 2 cut(s) | 76, 127 |
| BsmFI | GGGAC | 3 cut(s) | 1719, 1903, 1929 |
| BsmI | GAATGC | 3 cut(s) | 1453, 1732, 2900 |
| Bso31I | GGTCTC | 2 cut(s) | 321, 2434 |
| BsoBI | CYCGRG | 1 cut(s) | 1572 |
| Bsp120I | GGGCCC | 1 cut(s) | 620 |
| Bsp1286I | GDGCHC | 9 cut(s) | 217, 408, 551, 624, 1283, 1355, 1571, 1793, 2634 |
| Bsp13I | TCCGGA | 1 cut(s) | 899 |
| Bsp1407I | TGTACA | 1 cut(s) | 1065 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 888 |
| Bsp68I | TCGCGA | 2 cut(s) | 287, 497 |
| BspDI | ATCGAT | 1 cut(s) | 247 |
| BspEI | TCCGGA | 1 cut(s) | 899 |
| BspFNI | CGCG | 5 cut(s) | 68, 174, 188, 287, 497 |
| BspMAI | CTGCAG | 1 cut(s) | 1470 |
| BspMI | ACCTGC | 1 cut(s) | 363 |
| BspQI | GCTCTTC | 2 cut(s) | 995, 3261 |
| BspT107I | GGYRCC | 1 cut(s) | 546 |
| BspTNI | GGTCTC | 2 cut(s) | 321, 2434 |
| BsrBI | CCGCTC | 1 cut(s) | 678 |
| BsrDI | GCAATG | 1 cut(s) | 35 |
| BsrFI | RCCGGY | 4 cut(s) | 10, 511, 769, 3218 |
| BsrGI | TGTACA | 1 cut(s) | 1065 |
| BsrI | ACTGG | 7 cut(s) | 205, 1738, 2026, 2341, 2527, 2876, 3279 |
| BssAI | RCCGGY | 4 cut(s) | 10, 511, 769, 3218 |
| BssECI | CCNNGG | 4 cut(s) | 240, 536, 2292, 3072 |
| BssNI | GRCGYC | 5 cut(s) | 8, 107, 162, 386, 1960 |
| BssT1I | CCWWGG | 1 cut(s) | 240 |
| Bst2UI | CCWGG | 4 cut(s) | 597, 1215, 2293, 2462 |
| Bst4CI | ACNGT | 7 cut(s) | 121, 1022, 1221, 1820, 2407, 2835, 2921 |
| Bst6I | CTCTTC | 3 cut(s) | 995, 2038, 3261 |
| BstACI | GRCGYC | 5 cut(s) | 8, 107, 162, 386, 1960 |
| BstAUI | TGTACA | 1 cut(s) | 1065 |
| BstBAI | YACGTR | 2 cut(s) | 53, 2974 |
| BstEII | GGTNACC | 1 cut(s) | 2336 |
| BstF5I | GGATG | 7 cut(s) | 49, 277, 337, 583, 1591, 2707, 2983 |
| BstFNI | CGCG | 5 cut(s) | 68, 174, 188, 287, 497 |
| BstHHI | GCGC | 4 cut(s) | 20, 170, 176, 188 |
| BstMAI | GTCTC | 9 cut(s) | 76, 127, 241, 321, 2434, 2529, 2806, 2879, 3311 |
| BstMCI | CGRYCG | 1 cut(s) | 285 |
| BstNI | CCWGG | 4 cut(s) | 597, 1215, 2293, 2462 |
| BstNSI | RCATGY | 1 cut(s) | 1669 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 11 |
| BstPI | GGTNACC | 1 cut(s) | 2336 |
| BstSCI | CCNGG | 8 cut(s) | 467, 527, 585, 595, 617, 1213, 2291, 2460 |
| BstSFI | CTRYAG | 3 cut(s) | 1466, 1651, 3178 |
| BstSLI | GKGCMC | 3 cut(s) | 551, 624, 1283 |
| BstUI | CGCG | 5 cut(s) | 68, 174, 188, 287, 497 |
| BstV2I | GAAGAC | 1 cut(s) | 633 |
| BstX2I | RGATCY | 6 cut(s) | 1111, 1411, 2045, 2168, 2321, 3068 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1180 |
| BstYI | RGATCY | 6 cut(s) | 1111, 1411, 2045, 2168, 2321, 3068 |
| Bsu15I | ATCGAT | 1 cut(s) | 247 |
| BsuTUI | ATCGAT | 1 cut(s) | 247 |
| BtrI | CACGTC | 2 cut(s) | 661, 3200 |
| BtsCI | GGATG | 7 cut(s) | 49, 277, 337, 583, 1591, 2707, 2983 |
| BtsI | GCAGTG | 3 cut(s) | 110, 1463, 2069 |
| BtuMI | TCGCGA | 2 cut(s) | 287, 497 |
| BveI | ACCTGC | 1 cut(s) | 363 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1343 |
| CfoI | GCGC | 4 cut(s) | 20, 170, 176, 188 |
| Cfr10I | RCCGGY | 4 cut(s) | 10, 511, 769, 3218 |
| ClaI | ATCGAT | 1 cut(s) | 247 |
| CseI | GACGC | 5 cut(s) | 16, 74, 170, 375, 1968 |
| Csp6I | GTAC | 4 cut(s) | 190, 743, 1066, 3208 |
| CspAI | ACCGGT | 1 cut(s) | 3218 |
| CviAII | CATG | 7 cut(s) | 298, 1614, 1646, 1666, 2543, 2763, 3103 |
| CviQI | GTAC | 4 cut(s) | 190, 743, 1066, 3208 |
| DraI | TTTAAA | 1 cut(s) | 1231 |
| DraIII | CACNNNGTG | 1 cut(s) | 1822 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 90, 1923, 2798 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 90, 1923, 2798 |
| EaeI | YGGCCR | 1 cut(s) | 2511 |
| Eam1104I | CTCTTC | 3 cut(s) | 995, 2038, 3261 |
| EarI | CTCTTC | 3 cut(s) | 995, 2038, 3261 |
| Ecl136II | GAGCTC | 2 cut(s) | 215, 406 |
| Eco130I | CCWWGG | 1 cut(s) | 240 |
| Eco24I | GRGCYC | 6 cut(s) | 217, 408, 624, 1571, 1793, 2634 |
| Eco31I | GGTCTC | 2 cut(s) | 321, 2434 |
| Eco47I | GGWCC | 6 cut(s) | 583, 1185, 1217, 1916, 2835, 2853 |
| Eco53kI | GAGCTC | 2 cut(s) | 215, 406 |
| Eco57I | CTGAAG | 2 cut(s) | 586, 2928 |
| Eco72I | CACGTG | 2 cut(s) | 53, 2974 |
| Eco88I | CYCGRG | 1 cut(s) | 1572 |
| Eco91I | GGTNACC | 1 cut(s) | 2336 |
| EcoICRI | GAGCTC | 2 cut(s) | 215, 406 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1185, 2853, 3253 |
| EcoO65I | GGTNACC | 1 cut(s) | 2336 |
| EcoRII | CCWGG | 4 cut(s) | 595, 1213, 2291, 2460 |
| EcoT14I | CCWWGG | 1 cut(s) | 240 |
| EcoT22I | ATGCAT | 3 cut(s) | 1903, 1996, 2900 |
| EcoT38I | GRGCYC | 6 cut(s) | 217, 408, 624, 1571, 1793, 2634 |
| ErhI | CCWWGG | 1 cut(s) | 240 |
| Esp3I | CGTCTC | 2 cut(s) | 76, 127 |
| FaeI | CATG | 7 cut(s) | 301, 1617, 1649, 1669, 2546, 2766, 3106 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2468, 2500, 2949, 2981, 3047, 3079 |
| FaqI | GGGAC | 3 cut(s) | 1719, 1903, 1929 |
| FatI | CATG | 7 cut(s) | 297, 1613, 1645, 1665, 2542, 2762, 3102 |
| FauI | CCCGC | 4 cut(s) | 516, 558, 671, 830 |
| FauNDI | CATATG | 1 cut(s) | 2135 |
| FbaI | TGATCA | 3 cut(s) | 1345, 1432, 2968 |
| FokI | GGATG | 7 cut(s) | 56, 284, 324, 590, 1598, 2714, 2990 |
| FriOI | GRGCYC | 6 cut(s) | 217, 408, 624, 1571, 1793, 2634 |
| FspBI | CTAG | 7 cut(s) | 783, 1415, 1731, 1908, 1929, 1955, 3297 |
| FspI | TGCGCA | 1 cut(s) | 169 |
| GlaI | GCGC | 4 cut(s) | 19, 169, 175, 187 |
| GsaI | CCCAGC | 2 cut(s) | 1566, 3126 |
| GsuI | CTGGAG | 2 cut(s) | 188, 3104 |
| HgaI | GACGC | 5 cut(s) | 16, 74, 170, 375, 1968 |
| HhaI | GCGC | 4 cut(s) | 20, 170, 176, 188 |
| Hin1I | GRCGYC | 5 cut(s) | 8, 107, 162, 386, 1960 |
| Hin1II | CATG | 7 cut(s) | 301, 1617, 1649, 1669, 2546, 2766, 3106 |
| Hin6I | GCGC | 4 cut(s) | 18, 168, 174, 186 |
| HinP1I | GCGC | 4 cut(s) | 18, 168, 174, 186 |
| HincII | GTYRAC | 1 cut(s) | 2707 |
| HindII | GTYRAC | 1 cut(s) | 2707 |
| HindIII | AAGCTT | 4 cut(s) | 1073, 1143, 2946, 3184 |
| Hpy166II | GTNNAC | 5 cut(s) | 925, 1066, 1068, 1281, 2707 |
| Hpy8I | GTNNAC | 5 cut(s) | 925, 1066, 1068, 1281, 2707 |
| Hpy99I | CGWCG | 8 cut(s) | 10, 68, 109, 233, 259, 262, 391, 662 |
| HpyCH4III | ACNGT | 7 cut(s) | 121, 1022, 1221, 1820, 2407, 2835, 2921 |
| HpyCH4IV | ACGT | 6 cut(s) | 52, 107, 660, 1267, 2973, 3199 |
| HpySE526I | ACGT | 6 cut(s) | 52, 107, 660, 1267, 2973, 3199 |
| Hsp92I | GRCGYC | 5 cut(s) | 8, 107, 162, 386, 1960 |
| Hsp92II | CATG | 7 cut(s) | 301, 1617, 1649, 1669, 2546, 2766, 3106 |
| HspAI | GCGC | 4 cut(s) | 18, 168, 174, 186 |
| Kpn2I | TCCGGA | 1 cut(s) | 899 |
| KroI | GCCGGC | 1 cut(s) | 769 |
| KroNI | GCCGGC | 1 cut(s) | 771 |
| Ksp22I | TGATCA | 3 cut(s) | 1345, 1432, 2968 |
| LguI | GCTCTTC | 2 cut(s) | 995, 3261 |
| LmnI | GCTCC | 6 cut(s) | 180, 477, 902, 902, 1788, 2375 |
| LweI | GCATC | 9 cut(s) | 34, 346, 568, 981, 1565, 1692, 1910, 1981, 3001 |
| MaeI | CTAG | 7 cut(s) | 783, 1415, 1731, 1908, 1929, 1955, 3297 |
| MaeII | ACGT | 6 cut(s) | 52, 107, 660, 1267, 2973, 3199 |
| MbiI | CCGCTC | 1 cut(s) | 678 |
| MflI | RGATCY | 6 cut(s) | 1111, 1411, 2045, 2168, 2321, 3068 |
| MhlI | GDGCHC | 9 cut(s) | 217, 408, 551, 624, 1283, 1355, 1571, 1793, 2634 |
| MlsI | TGGCCA | 1 cut(s) | 2513 |
| MluNI | TGGCCA | 1 cut(s) | 2513 |
| MlyI | GAGTC | 9 cut(s) | 100, 145, 195, 457, 511, 535, 1960, 2250, 2531 |
| MmeI | TCCRAC | 5 cut(s) | 1856, 2035, 2224, 2862, 2934 |
| Mox20I | TGGCCA | 1 cut(s) | 2513 |
| Mph1103I | ATGCAT | 3 cut(s) | 1903, 1996, 2900 |
| MroI | TCCGGA | 1 cut(s) | 899 |
| MroNI | GCCGGC | 1 cut(s) | 769 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3171 |
| MscI | TGGCCA | 1 cut(s) | 2513 |
| MseI | TTAA | 7 cut(s) | 572, 1230, 1685, 1997, 2432, 2562, 2849 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1865, 2976 |
| Msp20I | TGGCCA | 1 cut(s) | 2513 |
| MspA1I | CMGCKG | 3 cut(s) | 1343, 3082, 3122 |
| MspR9I | CCNGG | 8 cut(s) | 469, 529, 587, 597, 619, 1215, 2293, 2462 |
| Mva1269I | GAATGC | 3 cut(s) | 1453, 1732, 2900 |
| MvaI | CCWGG | 4 cut(s) | 597, 1215, 2293, 2462 |
| MvnI | CGCG | 5 cut(s) | 68, 174, 188, 287, 497 |
| NaeI | GCCGGC | 1 cut(s) | 771 |
| NciI | CCSGG | 4 cut(s) | 469, 529, 587, 619 |
| NdeI | CATATG | 1 cut(s) | 2135 |
| NgoMIV | GCCGGC | 1 cut(s) | 769 |
| NlaIII | CATG | 7 cut(s) | 301, 1617, 1649, 1669, 2546, 2766, 3106 |
| NmeAIII | GCCGAG | 2 cut(s) | 104, 1747 |
| NmuCI | GTSAC | 9 cut(s) | 92, 108, 158, 514, 1858, 1867, 2157, 2578, 2612 |
| NruI | TCGCGA | 2 cut(s) | 287, 497 |
| NsbI | TGCGCA | 1 cut(s) | 169 |
| NsiI | ATGCAT | 3 cut(s) | 1903, 1996, 2900 |
| NspI | RCATGY | 1 cut(s) | 1669 |
| OliI | CACNNNNGTG | 1 cut(s) | 1865 |
| PaeR7I | CTCGAG | 1 cut(s) | 1572 |
| PaqCI | CACCTGC | 1 cut(s) | 363 |
| PciSI | GCTCTTC | 2 cut(s) | 995, 3261 |
| PctI | GAATGC | 3 cut(s) | 1453, 1732, 2900 |
| PdiI | GCCGGC | 1 cut(s) | 771 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3171 |
| PflFI | GACNNNGTC | 3 cut(s) | 106, 385, 1269 |
| PfoI | TCCNGGA | 2 cut(s) | 1213, 2460 |
| PinAI | ACCGGT | 1 cut(s) | 3218 |
| PleI | GAGTC | 9 cut(s) | 99, 145, 195, 456, 511, 535, 1959, 2249, 2531 |
| PmaCI | CACGTG | 2 cut(s) | 53, 2974 |
| PmlI | CACGTG | 2 cut(s) | 53, 2974 |
| PpsI | GAGTC | 9 cut(s) | 99, 145, 195, 456, 511, 535, 1959, 2249, 2531 |
| Ppu21I | YACGTR | 2 cut(s) | 53, 2974 |
| PpuMI | RGGWCCY | 2 cut(s) | 1185, 2853 |
| PshAI | GACNNNNGTC | 1 cut(s) | 11 |
| Psp124BI | GAGCTC | 2 cut(s) | 217, 408 |
| Psp5II | RGGWCCY | 2 cut(s) | 1185, 2853 |
| Psp6I | CCWGG | 4 cut(s) | 595, 1213, 2291, 2460 |
| PspCI | CACGTG | 2 cut(s) | 53, 2974 |
| PspEI | GGTNACC | 1 cut(s) | 2336 |
| PspFI | CCCAGC | 2 cut(s) | 1562, 3122 |
| PspGI | CCWGG | 4 cut(s) | 595, 1213, 2291, 2460 |
| PspOMI | GGGCCC | 1 cut(s) | 620 |
| PspPPI | RGGWCCY | 2 cut(s) | 1185, 2853 |
| PstI | CTGCAG | 1 cut(s) | 1470 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1343 |
| PsuI | RGATCY | 6 cut(s) | 1111, 1411, 2045, 2168, 2321, 3068 |
| PsyI | GACNNNGTC | 3 cut(s) | 106, 385, 1269 |
| PvuII | CAGCTG | 3 cut(s) | 1343, 3082, 3122 |
| RruI | TCGCGA | 2 cut(s) | 287, 497 |
| RsaI | GTAC | 4 cut(s) | 191, 744, 1067, 3209 |
| RsaNI | GTAC | 4 cut(s) | 190, 743, 1066, 3208 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1865, 2976 |
| SacI | GAGCTC | 2 cut(s) | 217, 408 |
| SapI | GCTCTTC | 2 cut(s) | 995, 3261 |
| SaqAI | TTAA | 7 cut(s) | 572, 1230, 1685, 1997, 2432, 2562, 2849 |
| SchI | GAGTC | 9 cut(s) | 100, 145, 195, 457, 511, 535, 1960, 2250, 2531 |
| ScrFI | CCNGG | 8 cut(s) | 469, 529, 587, 597, 619, 1215, 2293, 2462 |
| SduI | GDGCHC | 9 cut(s) | 217, 408, 551, 624, 1283, 1355, 1571, 1793, 2634 |
| SfaNI | GCATC | 9 cut(s) | 34, 346, 568, 981, 1565, 1692, 1910, 1981, 3001 |
| SfcI | CTRYAG | 3 cut(s) | 1466, 1651, 3178 |
| Sfr274I | CTCGAG | 1 cut(s) | 1572 |
| SgrAI | CRCCGGYG | 1 cut(s) | 511 |
| SinI | GGWCC | 6 cut(s) | 583, 1185, 1217, 1916, 2835, 2853 |
| SlaI | CTCGAG | 1 cut(s) | 1572 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1865, 2976 |
| SmlI | CTYRAG | 5 cut(s) | 218, 407, 722, 1572, 2755 |
| SmoI | CTYRAG | 5 cut(s) | 218, 407, 722, 1572, 2755 |
| SpeI | ACTAGT | 2 cut(s) | 782, 1907 |
| SspMI | CTAG | 7 cut(s) | 783, 1415, 1731, 1908, 1929, 1955, 3297 |
| SstI | GAGCTC | 2 cut(s) | 217, 408 |
| StyD4I | CCNGG | 8 cut(s) | 467, 527, 585, 595, 617, 1213, 2291, 2460 |
| StyI | CCWWGG | 1 cut(s) | 240 |
| TaaI | ACNGT | 7 cut(s) | 121, 1022, 1221, 1820, 2407, 2835, 2921 |
| TaiI | ACGT | 6 cut(s) | 55, 110, 663, 1270, 2976, 3202 |
| TatI | WGTACW | 1 cut(s) | 1065 |
| TauI | GCSGC | 4 cut(s) | 50, 305, 337, 2666 |
| Tru1I | TTAA | 7 cut(s) | 572, 1230, 1685, 1997, 2432, 2562, 2849 |
| Tru9I | TTAA | 7 cut(s) | 572, 1230, 1685, 1997, 2432, 2562, 2849 |
| TseFI | GTSAC | 9 cut(s) | 92, 108, 158, 514, 1858, 1867, 2157, 2578, 2612 |
| Tsp45I | GTSAC | 9 cut(s) | 92, 108, 158, 514, 1858, 1867, 2157, 2578, 2612 |
| TspDTI | ATGAA | 8 cut(s) | 406, 1074, 1602, 1638, 1676, 2142, 3207, 3248 |
| TspGWI | ACGGA | 9 cut(s) | 53, 100, 146, 193, 217, 590, 678, 749, 1889 |
| Tth111I | GACNNNGTC | 3 cut(s) | 106, 385, 1269 |
| VneI | GTGCAC | 1 cut(s) | 1279 |
| VpaK11BI | GGWCC | 6 cut(s) | 583, 1185, 1217, 1916, 2835, 2853 |
| XapI | RAATTY | 4 cut(s) | 1158, 1380, 1985, 2347 |
| XbaI | TCTAGA | 1 cut(s) | 1414 |
| XceI | RCATGY | 1 cut(s) | 1669 |
| XhoI | CTCGAG | 1 cut(s) | 1572 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3171 |
| XspI | CTAG | 7 cut(s) | 783, 1415, 1731, 1908, 1929, 1955, 3297 |
| ZraI | GACGTC | 1 cut(s) | 108 |
| Zsp2I | ATGCAT | 3 cut(s) | 1903, 1996, 2900 |