Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

2712694 .. 2714833

Gene Structure 2140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGACGGAAGTGATTAGCAAAACGAGTTTGTTCTTAGGAGCTTGTGGTAATCATCACCGTGTTGATGATTTCTCTTTCTCTCCGGTGAGTTTTGGTGGGTTTGGTTTGAAAAAGAGTTTCTCTTGTCTGAAGCTTAAGAGTCAGAAGCCTCTTAGAAGTGTATTTTACGGAAAACAGATCGTTTTCGGAGATTCTCAAGACGAGAGCTTCAGAAGATCATCAGCTATCACAGCTCAGACAACTTTGAGGATTGGGACAGCTCAGAAGTGGTGGGAGAAAGGTCTGAAAGATAACATGAGAGAGATCTCTTCAGCTCAAGAGCTCGTTGATTCTCTTACTAACGCTGGTGATAAGCTTGTTGTTGTTGATTTCTTCTCACCTGGCTGTGGTGGCTGCAAGGCTCTCCATCCTAAGATATGTCAGTTTGCAGAGATGAACCCGGATGTGCAGTTTCTTCAGGTGAATTACGAGGAGCATAAGTCCATGTGTTATAGTCTTGGTGTCCATGTTCTCCCTTTTTTCCGATTCTACCGTGGCTCTCAGGGTCGTGTTTGCAGCTTTAGCTGTACCAATGCCACGATCAAGAAATTCAGAGATGCCTTGGCAAAGCATGGTCCAGATAGGTGCAGCCTCGGACCGACCAAAGGCCTTGAAGAGAAAGAGCTTGTGGCACTTGCAGCCAACAAAGAACTCAACTTTACTTACACACCAAAGCCTGTACCAGTTGAGAAAGAAGCAGCCACTCCTGATTCAAACCCAAGTCTCCCTGTTCCTCTTCCTTCGATGAGCTCCAATGACGAAAAAACATTGGTCTCCGCAGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

275

Amino Acids

30.32

Weight (kDa)

8.9

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	83 - 155	8.2e-14	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	816
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	4 cut(s)	149, 193, 294, 440
AfaI	GTAC	2 cut(s)	568, 720
AfiI	CCNNNNNNNGG	2 cut(s)	386, 644
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	109, 653, 753
AjnI	CCWGG	1 cut(s)	379
Alw21I	GWGCWC	2 cut(s)	324, 791
Alw26I	GTCTC	2 cut(s)	767, 817
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	5 cut(s)	393, 555, 627, 677, 737
ApoI	RAATTY	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	614, 635
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	5 cut(s)	47, 97, 359, 369, 472
AvaII	GGWCC	2 cut(s)	614, 635
BanII	GRGCYC	2 cut(s)	324, 791
Bbv12I	GWGCWC	2 cut(s)	324, 791
BbvI	GCAGC	5 cut(s)	380, 567, 639, 689, 749
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	767, 817
BfrI	CTTAAG	1 cut(s)	134
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	5 cut(s)	394, 556, 628, 678, 738
BlsI	GCNGC	5 cut(s)	395, 557, 629, 679, 739
Bme1390I	CCNGG	2 cut(s)	381, 440
Bme18I	GGWCC	2 cut(s)	614, 635
BmgT120I	GGNCC	2 cut(s)	614, 635
BmrFI	CCNGG	2 cut(s)	381, 440
BmsI	GCATC	1 cut(s)	586
BpuEI	CTTGAG	2 cut(s)	180, 300
BpuMI	CCSGG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	3 cut(s)	532, 600, 631
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 644
Bse1I	ACTGG	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	532, 600, 631
BseGI	GGATG	2 cut(s)	406, 448
BseLI	CCNNNNNNNGG	2 cut(s)	386, 644
BseMII	CTCAG	3 cut(s)	248, 275, 554
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	5 cut(s)	380, 567, 639, 689, 749
BsgI	GTGCAG	2 cut(s)	467, 646
BshFI	GGCC	1 cut(s)	648
BsiHKAI	GWGCWC	2 cut(s)	324, 791
BsiSI	CCGG	2 cut(s)	83, 440
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	386, 644
BsmAI	GTCTC	2 cut(s)	767, 817
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	648
Bso31I	GGTCTC	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	324, 791
Bsp143I	GATC	4 cut(s)	177, 215, 303, 579
BspACI	CCGC	1 cut(s)	816
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	3 cut(s)	247, 274, 553
BspTI	CTTAAG	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	817
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	532, 600, 631
BssMI	GATC	4 cut(s)	177, 215, 303, 579
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	59, 533
Bst6I	CTCTTC	3 cut(s)	313, 648, 780
BstAFI	CTTAAG	1 cut(s)	134
BstDEI	CTNAG	6 cut(s)	34, 152, 234, 261, 411, 540
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	406, 448
BstKTI	GATC	4 cut(s)	180, 218, 306, 582
BstMAI	GTCTC	2 cut(s)	767, 817
BstMBI	GATC	4 cut(s)	177, 215, 303, 579
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 390, 561, 677
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	379, 438
BstV1I	GCAGC	5 cut(s)	380, 567, 639, 689, 749
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	406, 448
Cfr13I	GGNCC	2 cut(s)	614, 635
CpoI	CGGWCCG	1 cut(s)	635
Csp6I	GTAC	2 cut(s)	567, 719
CspI	CGGWCCG	1 cut(s)	635
CviAII	CATG	4 cut(s)	295, 484, 506, 611
CviQI	GTAC	2 cut(s)	567, 719
DdeI	CTNAG	6 cut(s)	34, 152, 234, 261, 411, 540
DpnI	GATC	4 cut(s)	179, 217, 305, 581
DpnII	GATC	4 cut(s)	177, 215, 303, 579
Eam1104I	CTCTTC	3 cut(s)	313, 648, 780
EarI	CTCTTC	3 cut(s)	313, 648, 780
Ecl136II	GAGCTC	2 cut(s)	322, 789
Eco130I	CCWWGG	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	648
Eco24I	GRGCYC	2 cut(s)	324, 791
Eco31I	GGTCTC	1 cut(s)	817
Eco47I	GGWCC	2 cut(s)	614, 635
Eco53kI	GAGCTC	2 cut(s)	322, 789
Eco57I	CTGAAG	4 cut(s)	149, 193, 294, 440
EcoICRI	GAGCTC	2 cut(s)	322, 789
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	2 cut(s)	324, 791
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	4 cut(s)	298, 487, 509, 614
FaiI	YATR	7 cut(s)	296, 418, 477, 485, 492, 507, 612
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	4 cut(s)	294, 483, 505, 610
Fnu4HI	GCNGC	5 cut(s)	394, 556, 628, 678, 738
FokI	GGATG	2 cut(s)	393, 455
FriOI	GRGCYC	2 cut(s)	324, 791
Fsp4HI	GCNGC	5 cut(s)	394, 556, 628, 678, 738
GluI	GCNGC	5 cut(s)	394, 556, 628, 678, 738
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	2 cut(s)	83, 440
Hin1II	CATG	4 cut(s)	298, 487, 509, 614
HindIII	AAGCTT	2 cut(s)	131, 353
HinfI	GANTC	5 cut(s)	139, 191, 329, 525, 749
HpaII	CCGG	2 cut(s)	83, 440
HphI	GGTGA	5 cut(s)	47, 97, 359, 369, 472
Hpy188III	TCNNGA	5 cut(s)	197, 317, 583, 617, 746
HpyAV	CCTTC	1 cut(s)	789
HpyCH4III	ACNGT	2 cut(s)	59, 533
HpyCH4V	TGCA	6 cut(s)	396, 428, 448, 555, 627, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 390, 561, 677
HpyF3I	CTNAG	6 cut(s)	34, 152, 234, 261, 411, 540
Hsp92II	CATG	4 cut(s)	298, 487, 509, 614
Kzo9I	GATC	4 cut(s)	177, 215, 303, 579
LmnI	GCTCC	3 cut(s)	38, 472, 794
Lsp1109I	GCAGC	5 cut(s)	380, 567, 639, 689, 749
LweI	GCATC	1 cut(s)	586
MalI	GATC	4 cut(s)	179, 217, 305, 581
MboI	GATC	4 cut(s)	177, 215, 303, 579
MboII	GAAGA	6 cut(s)	225, 300, 364, 446, 665, 767
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	324, 791
MluCI	AATT	2 cut(s)	463, 587
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	159, 240, 463, 641, 783
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	2 cut(s)	83, 440
MspR9I	CCNGG	2 cut(s)	381, 440
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	230, 390, 561, 677
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	4 cut(s)	177, 215, 303, 579
NlaIII	CATG	4 cut(s)	298, 487, 509, 614
PceI	AGGCCT	1 cut(s)	648
PfeI	GAWTC	4 cut(s)	191, 329, 525, 749
PkrI	GCNGC	5 cut(s)	395, 557, 629, 679, 739
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Psp124BI	GAGCTC	2 cut(s)	324, 791
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	614, 635
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	2 cut(s)	568, 720
RsaNI	GTAC	2 cut(s)	567, 719
RseI	CAYNNNNRTG	1 cut(s)	57
Rsr2I	CGGWCCG	1 cut(s)	635
RsrII	CGGWCCG	1 cut(s)	635
SacI	GAGCTC	2 cut(s)	324, 791
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	5 cut(s)	394, 556, 628, 678, 738
Sau3AI	GATC	4 cut(s)	177, 215, 303, 579
Sau96I	GGNCC	2 cut(s)	614, 635
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	2 cut(s)	381, 440
SduI	GDGCHC	2 cut(s)	324, 791
SfaNI	GCATC	1 cut(s)	586
SinI	GGWCC	2 cut(s)	614, 635
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	3 cut(s)	134, 195, 315
SmoI	CTYRAG	3 cut(s)	134, 195, 315
Sse9I	AATT	2 cut(s)	463, 587
SseBI	AGGCCT	1 cut(s)	648
SsiI	CCGC	1 cut(s)	816
SstI	GAGCTC	2 cut(s)	324, 791
StuI	AGGCCT	1 cut(s)	648
StyD4I	CCNGG	2 cut(s)	379, 438
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	59, 533
TaqI	TCGA	1 cut(s)	782
TaqII	GACCGA	1 cut(s)	652
TasI	AATT	2 cut(s)	463, 587
TfiI	GAWTC	4 cut(s)	191, 329, 525, 749
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseI	GCWGC	5 cut(s)	393, 555, 627, 677, 737
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	2 cut(s)	20, 183
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	614, 635
XapI	RAATTY	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.