Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

283296 .. 285482

Gene Structure 2187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1001500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGGAAGTTTTGAGCAAAACCGGTCTGTTGTCGTCCTGGCATCATCATCATCAAAACAAAAAAAGCAGCATCTCCGTTTTCCCAAAGAGTTGTAATTACAATAAATCAGGGTCTTTCTCTTGCTCCTTCAAACTGAATCCCGACATTTCATCACTATCCTTGTCCACAAAGAGTGATTTTCACGGAAAAAGGATTGCTTTTCAAGCCACCGGCATCAGGGGGAATTCCCAATCCCACGCTTCTTCTGCCGTTTATTCCCAGCAGTCTGGATTTCGGATTGGGAAGGCTGCGAAATGGTGGGAGAAGGGGAATCAGCCCAACATGAAAGAGGTGTCATCTGCAGAGGACCTAGTGGAATCCCTTTCAAACGCCGGGGATAAGCTGGTGATCGTTGATTTCTTCTCTCCTGGCTGTGGTGGCTGCAAAGCTCTTCATCCCAAGATATGTCAGCTGGCAGAGATGAACCCGGATGTCCAATTCCTTCAGGTGAACTACGAGGAACACAAGTCCATGTGTTACAGTCTCAATGTTCATGTCCTCCCCTTCTTCCGATTTTACCGAGGTGCTCATGGTCGCCTTTGCAGCTTCAGCTGCACCAACGCCACGATCAAGAAGTTTAGAGATGCATTAGCCAAGCACAAGCCAGAGCGGTGCAGCCTTGGGCCAACAAAAGGGCTGGAGGAGAAAGAGCTCCTCGCTCTTGCTGCCAACAAAGATCTCTCATTTACCTACACTCCTAAACCAACTGAAGATGTGCCTGCCAAGGAGGAAGTGATTGTGGCTGAAGAGGCACCATCTCGTCTTCCTCTTCCGTCGGCAACCTCACAGTCTGCTCAAGTGGCGCGGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

286

Amino Acids

31.36

Weight (kDa)

9.13

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	121 - 190	2.8e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	793
AccBSI	CCGCTC	1 cut(s)	652
AccII	CGCG	1 cut(s)	847
AciI	CCGC	3 cut(s)	5, 652, 847
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	4 cut(s)	470, 574, 771, 807
AfiI	CCNNNNNNNGG	3 cut(s)	219, 416, 674
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	133, 206, 369
AjnI	CCWGG	2 cut(s)	38, 409
AluBI	AGCT	6 cut(s)	385, 431, 454, 588, 594, 694
AluI	AGCT	6 cut(s)	385, 431, 454, 588, 594, 694
Alw21I	GWGCWC	2 cut(s)	571, 696
Alw26I	GTCTC	1 cut(s)	530
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	7 cut(s)	69, 290, 423, 585, 594, 657, 707
ApoI	RAATTY	1 cut(s)	226
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	2 cut(s)	349, 665
AsuC2I	CCSGG	2 cut(s)	376, 470
AsuHPI	GGTGA	2 cut(s)	400, 502
AvaII	GGWCC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	793
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	571, 696
BbvI	GCAGC	7 cut(s)	81, 277, 410, 581, 597, 669, 694
BccI	CCATC	1 cut(s)	805
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	40, 411
BcnI	CCSGG	2 cut(s)	376, 470
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	7 cut(s)	70, 291, 424, 586, 595, 658, 708
BlsI	GCNGC	7 cut(s)	71, 292, 425, 587, 596, 659, 709
Bme1390I	CCNGG	4 cut(s)	40, 376, 411, 470
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	349, 665
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	4 cut(s)	40, 376, 411, 470
BmsI	GCATC	4 cut(s)	52, 81, 225, 616
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	822
BpuMI	CCSGG	2 cut(s)	376, 470
BsaJI	CCNNGG	4 cut(s)	375, 562, 661, 765
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	721, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 416, 674
Bse118I	RCCGGY	2 cut(s)	23, 212
BseBI	CCWGG	2 cut(s)	40, 411
BseDI	CCNNGG	4 cut(s)	375, 562, 661, 765
BseGI	GGATG	2 cut(s)	436, 478
BseLI	CCNNNNNNNGG	3 cut(s)	219, 416, 674
BseRI	GAGGAG	2 cut(s)	686, 698
BseXI	GCAGC	7 cut(s)	81, 277, 410, 581, 597, 669, 694
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	2 cut(s)	580, 676
Bsh1236I	CGCG	1 cut(s)	847
BshFI	GGCC	1 cut(s)	667
BshNI	GGYRCC	1 cut(s)	793
BshTI	ACCGGT	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	571, 696
BsiSI	CCGG	4 cut(s)	24, 213, 375, 470
BslI	CCNNNNNNNGG	3 cut(s)	219, 416, 674
BsmAI	GTCTC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	571, 696
Bsp143I	GATC	3 cut(s)	390, 609, 718
BspACI	CCGC	3 cut(s)	5, 652, 847
BspANI	GGCC	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	795
BspMAI	CTGCAG	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	793
BsrBI	CCGCTC	1 cut(s)	652
BsrFI	RCCGGY	2 cut(s)	23, 212
BssAI	RCCGGY	2 cut(s)	23, 212
BssECI	CCNNGG	4 cut(s)	375, 562, 661, 765
BssMI	GATC	3 cut(s)	390, 609, 718
BssT1I	CCWWGG	2 cut(s)	661, 765
Bst2UI	CCWGG	2 cut(s)	40, 411
Bst4CI	ACNGT	2 cut(s)	524, 831
Bst6I	CTCTTC	4 cut(s)	438, 783, 816, 845
BstC8I	GCNNGC	2 cut(s)	456, 762
BstF5I	GGATG	2 cut(s)	436, 478
BstFNI	CGCG	1 cut(s)	847
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	3 cut(s)	393, 612, 721
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	390, 609, 718
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 248, 420, 585, 591, 594, 707, 791, 842
BstNI	CCWGG	2 cut(s)	40, 411
BstSCI	CCNGG	4 cut(s)	38, 374, 409, 468
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	847
BstV1I	GCAGC	7 cut(s)	81, 277, 410, 581, 597, 669, 694
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	436, 478
Cac8I	GCNNGC	2 cut(s)	456, 762
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	2 cut(s)	23, 212
Cfr13I	GGNCC	2 cut(s)	349, 665
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	4 cut(s)	325, 514, 536, 572
DpnI	GATC	3 cut(s)	392, 611, 720
DpnII	GATC	3 cut(s)	390, 609, 718
Eam1104I	CTCTTC	4 cut(s)	438, 783, 816, 845
EarI	CTCTTC	4 cut(s)	438, 783, 816, 845
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	2 cut(s)	661, 765
Eco24I	GRGCYC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	4 cut(s)	470, 574, 771, 807
EcoICRI	GAGCTC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	38, 409
EcoT14I	CCWWGG	2 cut(s)	661, 765
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	2 cut(s)	661, 765
FaeI	CATG	4 cut(s)	328, 517, 539, 575
FaiI	YATR	5 cut(s)	326, 448, 515, 537, 573
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FatI	CATG	4 cut(s)	324, 513, 535, 571
Fnu4HI	GCNGC	7 cut(s)	70, 291, 424, 586, 595, 658, 708
FokI	GGATG	2 cut(s)	423, 485
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	7 cut(s)	70, 291, 424, 586, 595, 658, 708
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	7 cut(s)	70, 291, 424, 586, 595, 658, 708
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	4 cut(s)	24, 213, 375, 470
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	4 cut(s)	328, 517, 539, 575
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HinfI	GANTC	3 cut(s)	139, 313, 359
HpaII	CCGG	4 cut(s)	24, 213, 375, 470
HphI	GGTGA	2 cut(s)	400, 502
Hpy166II	GTNNAC	2 cut(s)	168, 493
Hpy188I	TCNGA	2 cut(s)	279, 554
Hpy188III	TCNNGA	3 cut(s)	143, 270, 613
Hpy8I	GTNNAC	2 cut(s)	168, 493
Hpy99I	CGWCG	1 cut(s)	820
HpyAV	CCTTC	5 cut(s)	139, 280, 301, 494, 556
HpyCH4III	ACNGT	2 cut(s)	524, 831
HpyCH4V	TGCA	6 cut(s)	344, 426, 585, 597, 629, 657
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 248, 420, 585, 591, 594, 707, 791, 842
Hsp92II	CATG	4 cut(s)	328, 517, 539, 575
HspAI	GCGC	1 cut(s)	845
Kzo9I	GATC	3 cut(s)	390, 609, 718
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	131, 699
Lsp1109I	GCAGC	7 cut(s)	81, 277, 410, 581, 597, 669, 694
LweI	GCATC	4 cut(s)	52, 81, 225, 616
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	3 cut(s)	392, 611, 720
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	3 cut(s)	390, 609, 718
MboII	GAAGA	8 cut(s)	237, 394, 425, 541, 764, 797, 800, 803
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	571, 696
MluCI	AATT	3 cut(s)	97, 226, 479
Mph1103I	ATGCAT	1 cut(s)	631
MspA1I	CMGCKG	2 cut(s)	454, 594
MspI	CCGG	4 cut(s)	24, 213, 375, 470
MspR9I	CCNGG	4 cut(s)	40, 376, 411, 470
MvaI	CCWGG	2 cut(s)	40, 411
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	9 cut(s)	206, 248, 420, 585, 591, 594, 707, 791, 842
NciI	CCSGG	2 cut(s)	376, 470
NdeII	GATC	3 cut(s)	390, 609, 718
NlaIII	CATG	4 cut(s)	328, 517, 539, 575
NlaIV	GGNNCC	1 cut(s)	795
NsiI	ATGCAT	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	139, 313, 359
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	7 cut(s)	71, 292, 425, 587, 596, 659, 709
PpuMI	RGGWCCY	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	38, 409
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	2 cut(s)	38, 409
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	2 cut(s)	349, 665
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	2 cut(s)	454, 594
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	438
SatI	GCNGC	7 cut(s)	70, 291, 424, 586, 595, 658, 708
Sau3AI	GATC	3 cut(s)	390, 609, 718
Sau96I	GGNCC	2 cut(s)	349, 665
ScrFI	CCNGG	4 cut(s)	40, 376, 411, 470
SduI	GDGCHC	2 cut(s)	571, 696
SfaNI	GCATC	4 cut(s)	52, 81, 225, 616
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
Sse9I	AATT	3 cut(s)	97, 226, 479
SsiI	CCGC	3 cut(s)	5, 652, 847
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	4 cut(s)	38, 374, 409, 468
StyI	CCWWGG	2 cut(s)	661, 765
TaaI	ACNGT	2 cut(s)	524, 831
TasI	AATT	3 cut(s)	97, 226, 479
TfiI	GAWTC	3 cut(s)	139, 313, 359
TseI	GCWGC	7 cut(s)	69, 290, 423, 585, 594, 657, 707
TspDTI	ATGAA	5 cut(s)	141, 341, 425, 479, 524
TspGWI	ACGGA	3 cut(s)	67, 201, 804
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	226
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.