Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

46918850 .. 46920313

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG370400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGGATGTGGTTGTGAGCAAAACCAACTTGTTTTCATCATGCCACCACCATCACCAACACATCTCTGTGTTTCCAAAGACTTGGAATCAATCATCGCTGTCATTCTCATCAAAGACGGACTTTCATGGCAAACGGATTGGGCTTCAACAAGTTCCCACTGCAAGGGATCCGCCGCAATTCCAAGCCATTAATTCACAGCTTCAGGCGCCGGGTTTTCGAATCGGTAAAGCTCATAGATGGTGGGAAAAGGGGATCCAACCCAACATGAAGGAGGTGACGTCAGCACAAGACCTTGTGGATTCCCTCTCAAACGCAGGAGATAAGCTTGTCGTCCTTGATTTCTTCTCTCCCGGTTGTGGTGGCTGCAAGGCTCTTCATCCCAAGATATGCCAGTTCGCTGAGATGAACCCAGATGTTCAGTTTCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTCAATGTTCATGTCCTACCCTTCTTTCGCTTCTACAGAGGAGCTCACGGTCGTGTATGCAGCTTTAGCTGCACAAACGCCACGATCAAAAAATTTAAAGATGCGTTAGCCAAGCACAAGCCAGAGCGCTGCAGCCTTGGGCCAACTAAGGGGTTGGAGGAGAAAGAGCTCCTCACACTTTCTGCTAATAAAGATCTTAAATTCACCTACACCCCTAAACAAGTTGAATTTGTGCCTGCAAAAGCAGCAGATGAAATGATTGTGGCAGCACCATCTCGTTCAAACTTGGAATCTCTTCCTCTGCCTTCAACAACATTGAAGTCTGGTCAAATCTCCGAGGAGAGAAACATGGTCAGTGCTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

278

Amino Acids

31.02

Weight (kDa)

9.15

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	103 - 172	1.3e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	208
AciI	CCGC	3 cut(s)	5, 173, 176
AclWI	GGATC	4 cut(s)	164, 177, 250, 263
AcsI	RAATTY	3 cut(s)	560, 668, 695
AcuI	CTGAAG	2 cut(s)	188, 413
AcyI	GRCGYC	2 cut(s)	209, 281
AfeI	AGCGCT	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	165, 359, 617
AgsI	TTSAA	5 cut(s)	149, 695, 750, 777, 787
AleI	CACNNNNGTG	1 cut(s)	519
AluBI	AGCT	7 cut(s)	202, 233, 328, 512, 531, 537, 637
AluI	AGCT	7 cut(s)	202, 233, 328, 512, 531, 537, 637
Alw21I	GWGCWC	2 cut(s)	514, 639
AlwI	GGATC	4 cut(s)	164, 177, 250, 263
Aor51HI	AGCGCT	1 cut(s)	596
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	7 cut(s)	366, 528, 537, 597, 600, 713, 734
ApoI	RAATTY	3 cut(s)	560, 668, 695
AseI	ATTAAT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	211, 597
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	2 cut(s)	213, 354
AsuHPI	GGTGA	4 cut(s)	47, 289, 445, 664
AsuII	TTCGAA	1 cut(s)	220
BamHI	GGATCC	2 cut(s)	169, 255
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	514, 639
Bbv12I	GWGCWC	2 cut(s)	514, 639
BbvI	GCAGC	7 cut(s)	353, 524, 540, 584, 612, 725, 746
BccI	CCATC	3 cut(s)	60, 234, 748
BcnI	CCSGG	2 cut(s)	213, 354
BfmI	CTRYAG	2 cut(s)	502, 598
BfoI	RGCGCY	2 cut(s)	212, 598
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	8 cut(s)	176, 367, 529, 538, 598, 601, 714, 735
BlsI	GCNGC	8 cut(s)	177, 368, 530, 539, 599, 602, 715, 736
Bme1390I	CCNGG	2 cut(s)	213, 354
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	171, 210, 257
BmrFI	CCNGG	2 cut(s)	213, 354
BmsI	GCATC	1 cut(s)	559
Bpu14I	TTCGAA	1 cut(s)	220
BpuMI	CCSGG	2 cut(s)	213, 354
BsaHI	GRCGYC	2 cut(s)	209, 281
BsaJI	CCNNGG	2 cut(s)	604, 804
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 359, 617
Bse1I	ACTGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	604, 804
BseGI	GGATG	2 cut(s)	13, 379
BseLI	CCNNNNNNNGG	3 cut(s)	165, 359, 617
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	4 cut(s)	522, 629, 641, 821
BseXI	GCAGC	7 cut(s)	353, 524, 540, 584, 612, 725, 746
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	1 cut(s)	523
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	2 cut(s)	514, 639
BsiSI	CCGG	2 cut(s)	212, 354
BslI	CCNNNNNNNGG	3 cut(s)	165, 359, 617
BsnI	GGCC	1 cut(s)	610
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	514, 639
Bsp143I	GATC	4 cut(s)	169, 255, 552, 661
BspACI	CCGC	3 cut(s)	5, 173, 176
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	171, 210, 257
BspMAI	CTGCAG	1 cut(s)	602
BspPI	GGATC	4 cut(s)	164, 177, 250, 263
BspQI	GCTCTTC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	604, 804
BssMI	GATC	4 cut(s)	169, 255, 552, 661
BssNI	GRCGYC	2 cut(s)	209, 281
BssT1I	CCWWGG	1 cut(s)	604
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	381, 768
BstACI	GRCGYC	2 cut(s)	209, 281
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	2 cut(s)	402, 615
BstF5I	GGATG	2 cut(s)	13, 379
BstH2I	RGCGCY	2 cut(s)	212, 598
BstHHI	GCGC	2 cut(s)	211, 597
BstKTI	GATC	4 cut(s)	172, 258, 555, 664
BstMBI	GATC	4 cut(s)	169, 255, 552, 661
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 534, 537, 713
BstSCI	CCNGG	2 cut(s)	211, 352
BstSFI	CTRYAG	2 cut(s)	502, 598
BstV1I	GCAGC	7 cut(s)	353, 524, 540, 584, 612, 725, 746
BstX2I	RGATCY	3 cut(s)	169, 255, 661
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	3 cut(s)	169, 255, 661
BsuRI	GGCC	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	13, 379
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 829
Cac8I	GCNNGC	1 cut(s)	705
CfoI	GCGC	2 cut(s)	211, 597
Cfr13I	GGNCC	1 cut(s)	608
CviAII	CATG	6 cut(s)	42, 128, 268, 457, 479, 817
DdeI	CTNAG	2 cut(s)	402, 615
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	4 cut(s)	171, 257, 554, 663
DpnII	GATC	4 cut(s)	169, 255, 552, 661
DraI	TTTAAA	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	381, 768
EarI	CTCTTC	2 cut(s)	381, 768
EciI	GGCGGA	2 cut(s)	20, 162
Ecl136II	GAGCTC	2 cut(s)	512, 637
Eco130I	CCWWGG	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	514, 639
Eco47III	AGCGCT	1 cut(s)	596
Eco53kI	GAGCTC	2 cut(s)	512, 637
Eco57I	CTGAAG	2 cut(s)	188, 413
EcoICRI	GAGCTC	2 cut(s)	512, 637
EcoT14I	CCWWGG	1 cut(s)	604
EcoT38I	GRGCYC	2 cut(s)	514, 639
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	6 cut(s)	45, 131, 271, 460, 482, 820
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	6 cut(s)	41, 127, 267, 456, 478, 816
Fnu4HI	GCNGC	8 cut(s)	176, 367, 529, 538, 598, 601, 714, 735
FokI	GGATG	2 cut(s)	20, 366
FriOI	GRGCYC	2 cut(s)	514, 639
Fsp4HI	GCNGC	8 cut(s)	176, 367, 529, 538, 598, 601, 714, 735
GlaI	GCGC	2 cut(s)	210, 596
GluI	GCNGC	8 cut(s)	176, 367, 529, 538, 598, 601, 714, 735
GsaI	CCCAGC	1 cut(s)	831
HaeII	RGCGCY	2 cut(s)	212, 598
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	2 cut(s)	212, 354
HhaI	GCGC	2 cut(s)	211, 597
Hin1I	GRCGYC	2 cut(s)	209, 281
Hin1II	CATG	6 cut(s)	45, 131, 271, 460, 482, 820
Hin6I	GCGC	2 cut(s)	209, 595
HinP1I	GCGC	2 cut(s)	209, 595
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	4 cut(s)	88, 222, 302, 758
HpaII	CCGG	2 cut(s)	212, 354
HphI	GGTGA	4 cut(s)	47, 289, 445, 664
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	1 cut(s)	805
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	3 cut(s)	265, 499, 783
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	6 cut(s)	164, 369, 528, 540, 600, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 534, 537, 713
HpyF3I	CTNAG	2 cut(s)	402, 615
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	2 cut(s)	209, 281
Hsp92II	CATG	6 cut(s)	45, 131, 271, 460, 482, 820
HspAI	GCGC	2 cut(s)	209, 595
KasI	GGCGCC	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	169, 255, 552, 661
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	509, 642
Lsp1109I	GCAGC	7 cut(s)	353, 524, 540, 584, 612, 725, 746
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	171, 257, 554, 663
MboI	GATC	4 cut(s)	169, 255, 552, 661
MboII	GAAGA	4 cut(s)	337, 368, 419, 755
MflI	RGATCY	3 cut(s)	169, 255, 661
MhlI	GDGCHC	2 cut(s)	514, 639
MluCI	AATT	5 cut(s)	179, 193, 560, 668, 695
Mly113I	GGCGCC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	283, 603
MnlI	CCTC	9 cut(s)	268, 317, 436, 479, 500, 619, 650, 777, 799
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	3 cut(s)	192, 564, 666
MslI	CAYNNNNRTG	2 cut(s)	68, 519
MspI	CCGG	2 cut(s)	212, 354
MspR9I	CCNGG	2 cut(s)	213, 354
MwoI	GCNNNNNNNGC	4 cut(s)	208, 534, 537, 713
NarI	GGCGCC	1 cut(s)	209
NciI	CCSGG	2 cut(s)	213, 354
NdeII	GATC	4 cut(s)	169, 255, 552, 661
NlaIII	CATG	6 cut(s)	45, 131, 271, 460, 482, 820
NlaIV	GGNNCC	3 cut(s)	171, 210, 257
NmuCI	GTSAC	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	4 cut(s)	88, 222, 302, 758
PkrI	GCNGC	8 cut(s)	177, 368, 530, 539, 599, 602, 715, 736
PluTI	GGCGCC	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	192
Psp124BI	GAGCTC	2 cut(s)	514, 639
PspFI	CCCAGC	1 cut(s)	827
PspN4I	GGNNCC	3 cut(s)	171, 210, 257
PspPI	GGNCC	1 cut(s)	608
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	3 cut(s)	169, 255, 661
RseI	CAYNNNNRTG	2 cut(s)	68, 519
SacI	GAGCTC	2 cut(s)	514, 639
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	192, 564, 666
SatI	GCNGC	8 cut(s)	176, 367, 529, 538, 598, 601, 714, 735
Sau3AI	GATC	4 cut(s)	169, 255, 552, 661
Sau96I	GGNCC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	213, 354
SduI	GDGCHC	2 cut(s)	514, 639
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	502, 598
SfoI	GGCGCC	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	220
SmiMI	CAYNNNNRTG	2 cut(s)	68, 519
Sse9I	AATT	5 cut(s)	179, 193, 560, 668, 695
SsiI	CCGC	3 cut(s)	5, 173, 176
SspDI	GGCGCC	1 cut(s)	208
SstI	GAGCTC	2 cut(s)	514, 639
StyD4I	CCNGG	2 cut(s)	211, 352
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	220
TasI	AATT	5 cut(s)	179, 193, 560, 668, 695
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	4 cut(s)	88, 222, 302, 758
Tru1I	TTAA	3 cut(s)	192, 564, 666
Tru9I	TTAA	3 cut(s)	192, 564, 666
TscAI	CASTG	2 cut(s)	166, 829
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	7 cut(s)	366, 528, 537, 597, 600, 713, 734
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	7 cut(s)	27, 116, 284, 368, 422, 467, 735
TspGWI	ACGGA	2 cut(s)	134, 151
TspRI	CASTG	2 cut(s)	166, 829
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	3 cut(s)	560, 668, 695
XmnI	GAANNNNTTC	1 cut(s)	762
ZraI	GACGTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.