Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

223112 .. 225642

Gene Structure 2531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G001600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCAGAGGTTTTGAGCAAAACCAGTCTCTTCTCGTCTTGGCATCATCACAATCGTCAGAATCAAAGCATCTCTGTTTTCCCGAAGAGTTGTAATTACAATAAATCTGGGTCGTTTTGTTGCTCTCTGAAACTGAACCCAGAGATTTCATCACTTTCATTATCGACAAAGAGTGATTTTCATGGCAAAGGGTTTGCTCTTCAAGAGCATAGAGCCATGCCCAGCAGAGGGAATTTCCAATCCCAGGCTGCTTCTGTCGTTAATTCCCTGCAGACGGGTCTTCGGTTTGGGAAAGCTCTTAAATGGTGGGAAAAGGGAAATCAACCCAACATGAAAGAGGTAACATCTGCACAGGACCTCGTGGATTCACTATCAAACGCTGGAGATAAGCTTGTGGTGGTTGATTTCTTCTCTCCTGGTTGTGGTGGCTGCAAAGCTCTTCATCCAAAGATATGTCAACTGGCAGAGATGAACCCAGATGTCCAATTCCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTTAATGTTCATGTGCTGCCCTTCTTCCGCTTCTACAGAGGTGCTCATGGTCGTCTATGCAGCTTTAGCTGTACAAATGCCACGATCAAGAAATTTAGAGATGCCTTAGCCAAGCACAAGCCAGACCGCTGCAGCCTTGGGCCAACAAAAGGGTTGGAGGAGAAAGAGCTCCTGGCTCTTGCTGCTAATAAAGATATCTCATTTAACTACACACCTAAGCCAGTTGAAGCTGTGCCTACGCCTGCAAAGGAAGTGATTGTATCTGAAGCGGCACCATCTCGTCTTAACTCGGAAGCTCTTCCTCTTCCATCAATGACAACCTCAAAGTCTGCTCAAGTGGTCACTGCTTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

296

Amino Acids

32.57

Weight (kDa)

9.19

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	802
AciI	CCGC	3 cut(s)	559, 658, 800
AcsI	RAATTY	2 cut(s)	232, 623
AcuI	CTGAAG	2 cut(s)	476, 816
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	6 cut(s)	227, 228, 244, 274, 422, 680
AgsI	TTSAA	2 cut(s)	203, 758
AjnI	CCWGG	3 cut(s)	243, 415, 702
AluBI	AGCT	8 cut(s)	296, 391, 437, 594, 600, 700, 761, 827
AluI	AGCT	8 cut(s)	296, 391, 437, 594, 600, 700, 761, 827
Alw21I	GWGCWC	2 cut(s)	577, 702
Alw26I	GTCTC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	7 cut(s)	248, 429, 547, 591, 660, 663, 713
ApoI	RAATTY	2 cut(s)	232, 623
Asp700I	GAANNNNTTC	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	355, 671
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	702
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	577, 702
BbvI	GCAGC	7 cut(s)	235, 416, 534, 603, 647, 675, 700
BccI	CCATC	2 cut(s)	814, 847
BciT130I	CCWGG	3 cut(s)	245, 417, 704
BcoDI	GTCTC	1 cut(s)	32
BfmI	CTRYAG	3 cut(s)	269, 565, 661
BisI	GCNGC	8 cut(s)	249, 430, 548, 592, 661, 664, 714, 801
BlsI	GCNGC	8 cut(s)	250, 431, 549, 593, 662, 665, 715, 802
Bme1390I	CCNGG	3 cut(s)	245, 417, 704
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	355, 671
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	3 cut(s)	245, 417, 704
BmsI	GCATC	3 cut(s)	52, 78, 622
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	2 cut(s)	637, 747
BpuEI	CTTGAG	1 cut(s)	849
BsaJI	CCNNGG	2 cut(s)	243, 667
Bsc4I	CCNNNNNNNGG	6 cut(s)	227, 228, 244, 274, 422, 680
Bse1I	ACTGG	3 cut(s)	24, 465, 752
BseBI	CCWGG	3 cut(s)	245, 417, 704
BseDI	CCNNGG	2 cut(s)	243, 667
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	6 cut(s)	227, 228, 244, 274, 422, 680
BseNI	ACTGG	3 cut(s)	24, 465, 752
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	7 cut(s)	235, 416, 534, 603, 647, 675, 700
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	577, 702
BslI	CCNNNNNNNGG	6 cut(s)	227, 228, 244, 274, 422, 680
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	673
Bsp1286I	GDGCHC	2 cut(s)	577, 702
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	1 cut(s)	615
BspACI	CCGC	3 cut(s)	559, 658, 800
BspANI	GGCC	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	804
BspMAI	CTGCAG	2 cut(s)	273, 665
BspQI	GCTCTTC	3 cut(s)	204, 444, 834
BspT107I	GGYRCC	1 cut(s)	802
BsrGI	TGTACA	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	24, 465, 752
BssECI	CCNNGG	2 cut(s)	243, 667
BssMI	GATC	1 cut(s)	615
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	3 cut(s)	245, 417, 704
Bst6I	CTCTTC	6 cut(s)	35, 80, 204, 444, 834, 840
BstAUI	TGTACA	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	2 cut(s)	637, 747
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	615
BstMWI	GCNNNNNNNGC	2 cut(s)	597, 713
BstNI	CCWGG	3 cut(s)	245, 417, 704
BstSCI	CCNGG	3 cut(s)	243, 415, 702
BstSFI	CTRYAG	3 cut(s)	269, 565, 661
BstV1I	GCAGC	7 cut(s)	235, 416, 534, 603, 647, 675, 700
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	673
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	1 cut(s)	774
Cfr13I	GGNCC	2 cut(s)	355, 671
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	6 cut(s)	182, 217, 331, 520, 542, 578
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	2 cut(s)	637, 747
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
Eam1104I	CTCTTC	6 cut(s)	35, 80, 204, 444, 834, 840
EarI	CTCTTC	6 cut(s)	35, 80, 204, 444, 834, 840
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	2 cut(s)	476, 816
EcoICRI	GAGCTC	1 cut(s)	700
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	3 cut(s)	243, 415, 702
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	6 cut(s)	185, 220, 334, 523, 545, 581
FatI	CATG	6 cut(s)	181, 216, 330, 519, 541, 577
Fnu4HI	GCNGC	8 cut(s)	249, 430, 548, 592, 661, 664, 714, 801
FokI	GGATG	1 cut(s)	429
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	8 cut(s)	249, 430, 548, 592, 661, 664, 714, 801
GluI	GCNGC	8 cut(s)	249, 430, 548, 592, 661, 664, 714, 801
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	673
Hin1II	CATG	6 cut(s)	185, 220, 334, 523, 545, 581
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	61, 365
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	2 cut(s)	458, 499
Hpy188I	TCNGA	4 cut(s)	60, 129, 796, 823
Hpy188III	TCNNGA	3 cut(s)	82, 203, 619
Hpy8I	GTNNAC	2 cut(s)	458, 499
HpyAV	CCTTC	2 cut(s)	500, 562
HpyCH4V	TGCA	6 cut(s)	271, 350, 432, 591, 663, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	597, 713
HpyF3I	CTNAG	2 cut(s)	637, 747
Hsp92II	CATG	6 cut(s)	185, 220, 334, 523, 545, 581
Kzo9I	GATC	1 cut(s)	615
LguI	GCTCTTC	3 cut(s)	204, 444, 834
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	7 cut(s)	235, 416, 534, 603, 647, 675, 700
LweI	GCATC	3 cut(s)	52, 78, 622
MaeIII	GTNAC	2 cut(s)	340, 871
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	9 cut(s)	22, 97, 191, 272, 400, 431, 547, 821, 827
MhlI	GDGCHC	2 cut(s)	577, 702
MluCI	AATT	5 cut(s)	94, 232, 262, 485, 623
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	8 cut(s)	221, 331, 368, 499, 563, 682, 843, 862
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	5 cut(s)	261, 300, 534, 735, 816
MspA1I	CMGCKG	1 cut(s)	660
MspR9I	CCNGG	3 cut(s)	245, 417, 704
MvaI	CCWGG	3 cut(s)	245, 417, 704
MwoI	GCNNNNNNNGC	2 cut(s)	597, 713
NdeII	GATC	1 cut(s)	615
NlaIII	CATG	6 cut(s)	185, 220, 334, 523, 545, 581
NlaIV	GGNNCC	1 cut(s)	804
NmuCI	GTSAC	1 cut(s)	871
PciSI	GCTCTTC	3 cut(s)	204, 444, 834
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	2 cut(s)	61, 365
PkrI	GCNGC	8 cut(s)	250, 431, 549, 593, 662, 665, 715, 802
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	3 cut(s)	243, 415, 702
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	3 cut(s)	243, 415, 702
PspN4I	GGNNCC	1 cut(s)	804
PspPI	GGNCC	2 cut(s)	355, 671
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	2 cut(s)	273, 665
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	702
SapI	GCTCTTC	3 cut(s)	204, 444, 834
SaqAI	TTAA	5 cut(s)	261, 300, 534, 735, 816
SatI	GCNGC	8 cut(s)	249, 430, 548, 592, 661, 664, 714, 801
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	2 cut(s)	355, 671
ScrFI	CCNGG	3 cut(s)	245, 417, 704
SduI	GDGCHC	2 cut(s)	577, 702
SfaNI	GCATC	3 cut(s)	52, 78, 622
SfcI	CTRYAG	3 cut(s)	269, 565, 661
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
Sse9I	AATT	5 cut(s)	94, 232, 262, 485, 623
SsiI	CCGC	3 cut(s)	559, 658, 800
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	3 cut(s)	243, 415, 702
StyI	CCWWGG	1 cut(s)	667
TaqI	TCGA	1 cut(s)	164
TasI	AATT	5 cut(s)	94, 232, 262, 485, 623
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	2 cut(s)	61, 365
Tru1I	TTAA	5 cut(s)	261, 300, 534, 735, 816
Tru9I	TTAA	5 cut(s)	261, 300, 534, 735, 816
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	7 cut(s)	248, 429, 547, 591, 660, 663, 713
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	7 cut(s)	138, 147, 170, 347, 431, 485, 530
TspRI	CASTG	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	2 cut(s)	232, 623
XmnI	GAANNNNTTC	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.