Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1117260 .. 1119251

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGGATGTGGTTGTGAGCAAAATCAACTTGTTTTCATCATGCAACCATCATCAACACATCTCTGTGTTTCCAAAGACTTCAGGGTCTTGGAATCGATCATCGTTGTCATTCTCATCAAAGACGGACTTTCATGGCAAACGGATTGGGCTTCACACTGCAAGGGATCCGCCGCAATTCCAAGCCATTAATTCACAGCTTCAGGCGCCGGGTTTTCGAATCGGTAAAGCTCATAGATGGTGGGAAAAGGGGATCCAACCCAACATGAAAGAGGTGACATCAGCACAAGACCTTGTGGATTCCCTCTCAAACGCAGGAGATAAGCTTGTCGTCCTTGATTTCTTCTCTCCCGGTTGTGGTGGCTGCAAAGCTCTTCATCCCAAGATATGTCAGTTTGCTGAGATGAACCCAGATGTTCAGTTTCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTCAATGTTCATGTCCTACCCTTCTTCCGCTTCTACAGAGGAGCTCAAGGTCGTGTATGCAGCTTTAGCTGTACAAACGCCACGATCAAAAAATTTAAAGATGCGTTAGCTAAGCACAGGCCAGAGCGCTGCAGCCTTGGGCCAACTAAGGGGTTGGAGGAGAAAGAGCTCCTCGCACTTTCTGCTAATAAAGATCTTAAATTCACCTACGCCCCTAAACAAGTTGAATTTGTGCCTGCAAAAGCATCAGAGGAAATGATTGTGGCAGCACCATCTCGTTCAAACTCGGAATCTCTTCCTCTGCCTTCAACAACATTGAAGTCTGGTCAAATCTCCGAGGAGAGAAACATGGTCGGTGCTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

277

Amino Acids

30.75

Weight (kDa)

9.25

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	102 - 176	5.7e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	205
AciI	CCGC	4 cut(s)	5, 170, 173, 493
AclWI	GGATC	4 cut(s)	161, 174, 247, 260
AcsI	RAATTY	3 cut(s)	557, 665, 692
AcuI	CTGAAG	3 cut(s)	66, 185, 410
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	538
AfeI	AGCGCT	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	356, 614
AgsI	TTSAA	4 cut(s)	692, 747, 774, 784
AluBI	AGCT	9 cut(s)	199, 230, 325, 371, 509, 528, 534, 575, 634
AluI	AGCT	9 cut(s)	199, 230, 325, 371, 509, 528, 534, 575, 634
Alw21I	GWGCWC	2 cut(s)	511, 636
AlwI	GGATC	4 cut(s)	161, 174, 247, 260
Aor51HI	AGCGCT	1 cut(s)	593
AoxI	GGCC	2 cut(s)	584, 605
ApeKI	GCWGC	5 cut(s)	363, 525, 594, 597, 731
ApoI	RAATTY	3 cut(s)	557, 665, 692
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	759
AspLEI	GCGC	2 cut(s)	208, 594
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	2 cut(s)	210, 351
AsuHPI	GGTGA	3 cut(s)	286, 442, 661
AsuII	TTCGAA	1 cut(s)	217
BamHI	GGATCC	2 cut(s)	166, 252
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	2 cut(s)	511, 636
Bbv12I	GWGCWC	2 cut(s)	511, 636
BbvI	GCAGC	5 cut(s)	350, 537, 581, 609, 743
BccI	CCATC	3 cut(s)	57, 231, 745
BcnI	CCSGG	2 cut(s)	210, 351
BfmI	CTRYAG	2 cut(s)	499, 595
BfoI	RGCGCY	2 cut(s)	209, 595
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	6 cut(s)	173, 364, 526, 595, 598, 732
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	6 cut(s)	174, 365, 527, 596, 599, 733
Bme1390I	CCNGG	2 cut(s)	210, 351
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	3 cut(s)	168, 207, 254
BmrFI	CCNGG	2 cut(s)	210, 351
BmsI	GCATC	2 cut(s)	556, 719
Bpu1102I	GCTNAGC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	2 cut(s)	210, 351
Bsa29I	ATCGAT	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	601, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 614
BseCI	ATCGAT	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	601, 801
BseGI	GGATG	2 cut(s)	13, 376
BseLI	CCNNNNNNNGG	2 cut(s)	356, 614
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	4 cut(s)	519, 626, 638, 818
BseXI	GCAGC	5 cut(s)	350, 537, 581, 609, 743
BseYI	CCCAGC	1 cut(s)	824
BshFI	GGCC	2 cut(s)	586, 607
BshNI	GGYRCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	511, 636
BsiSI	CCGG	2 cut(s)	209, 351
BslI	CCNNNNNNNGG	2 cut(s)	356, 614
BsnI	GGCC	2 cut(s)	586, 607
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	511, 636
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	5 cut(s)	98, 166, 252, 549, 658
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	4 cut(s)	5, 170, 173, 493
BspANI	GGCC	2 cut(s)	586, 607
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	168, 207, 254
BspMAI	CTGCAG	1 cut(s)	599
BspPI	GGATC	4 cut(s)	161, 174, 247, 260
BspQI	GCTCTTC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	601, 801
BssMI	GATC	5 cut(s)	98, 166, 252, 549, 658
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	601
Bst6I	CTCTTC	2 cut(s)	378, 765
BstACI	GRCGYC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	3 cut(s)	399, 576, 612
BstF5I	GGATG	2 cut(s)	13, 376
BstH2I	RGCGCY	2 cut(s)	209, 595
BstHHI	GCGC	2 cut(s)	208, 594
BstKTI	GATC	5 cut(s)	101, 169, 255, 552, 661
BstMBI	GATC	5 cut(s)	98, 166, 252, 549, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 531, 647
BstSCI	CCNGG	2 cut(s)	208, 349
BstSFI	CTRYAG	2 cut(s)	499, 595
BstV1I	GCAGC	5 cut(s)	350, 537, 581, 609, 743
BstX2I	RGATCY	3 cut(s)	166, 252, 658
BstYI	RGATCY	3 cut(s)	166, 252, 658
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	586, 607
BsuTUI	ATCGAT	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	13, 376
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	702
CfoI	GCGC	2 cut(s)	208, 594
Cfr13I	GGNCC	1 cut(s)	605
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	6 cut(s)	42, 134, 265, 454, 476, 814
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	399, 576, 612
DinI	GGCGCC	1 cut(s)	207
DpnI	GATC	5 cut(s)	100, 168, 254, 551, 660
DpnII	GATC	5 cut(s)	98, 166, 252, 549, 658
DraI	TTTAAA	1 cut(s)	562
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	378, 765
EarI	CTCTTC	2 cut(s)	378, 765
EciI	GGCGGA	2 cut(s)	20, 159
Ecl136II	GAGCTC	2 cut(s)	509, 634
Eco130I	CCWWGG	1 cut(s)	601
Eco24I	GRGCYC	2 cut(s)	511, 636
Eco47III	AGCGCT	1 cut(s)	593
Eco53kI	GAGCTC	2 cut(s)	509, 634
Eco57I	CTGAAG	3 cut(s)	66, 185, 410
EcoICRI	GAGCTC	2 cut(s)	509, 634
EcoT14I	CCWWGG	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	511, 636
EgeI	GGCGCC	1 cut(s)	207
EheI	GGCGCC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	6 cut(s)	45, 137, 268, 457, 479, 817
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	6 cut(s)	41, 133, 264, 453, 475, 813
Fnu4HI	GCNGC	6 cut(s)	173, 364, 526, 595, 598, 732
FokI	GGATG	2 cut(s)	20, 363
FriOI	GRGCYC	2 cut(s)	511, 636
Fsp4HI	GCNGC	6 cut(s)	173, 364, 526, 595, 598, 732
GlaI	GCGC	2 cut(s)	207, 593
GluI	GCNGC	6 cut(s)	173, 364, 526, 595, 598, 732
GsaI	CCCAGC	1 cut(s)	828
HaeII	RGCGCY	2 cut(s)	209, 595
HaeIII	GGCC	2 cut(s)	586, 607
HapII	CCGG	2 cut(s)	209, 351
HhaI	GCGC	2 cut(s)	208, 594
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	6 cut(s)	45, 137, 268, 457, 479, 817
Hin6I	GCGC	2 cut(s)	206, 592
HinP1I	GCGC	2 cut(s)	206, 592
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	94, 219, 299, 755
HpaII	CCGG	2 cut(s)	209, 351
HphI	GGTGA	3 cut(s)	286, 442, 661
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	715, 754, 802
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	496, 780
HpyCH4V	TGCA	6 cut(s)	45, 161, 366, 525, 597, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 531, 647
HpyF3I	CTNAG	3 cut(s)	399, 576, 612
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	6 cut(s)	45, 137, 268, 457, 479, 817
HspAI	GCGC	2 cut(s)	206, 592
KasI	GGCGCC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	98, 166, 252, 549, 658
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	506, 639
Lsp1109I	GCAGC	5 cut(s)	350, 537, 581, 609, 743
LweI	GCATC	2 cut(s)	556, 719
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	5 cut(s)	100, 168, 254, 551, 660
MboI	GATC	5 cut(s)	98, 166, 252, 549, 658
MboII	GAAGA	5 cut(s)	334, 365, 416, 481, 752
MflI	RGATCY	3 cut(s)	166, 252, 658
MhlI	GDGCHC	2 cut(s)	511, 636
MluCI	AATT	5 cut(s)	176, 190, 557, 665, 692
Mly113I	GGCGCC	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	280, 600
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	3 cut(s)	189, 561, 663
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	2 cut(s)	209, 351
MspR9I	CCNGG	2 cut(s)	210, 351
MwoI	GCNNNNNNNGC	3 cut(s)	205, 531, 647
NarI	GGCGCC	1 cut(s)	206
NciI	CCSGG	2 cut(s)	210, 351
NdeII	GATC	5 cut(s)	98, 166, 252, 549, 658
NlaIII	CATG	6 cut(s)	45, 137, 268, 457, 479, 817
NlaIV	GGNNCC	3 cut(s)	168, 207, 254
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	4 cut(s)	94, 219, 299, 755
PkrI	GCNGC	6 cut(s)	174, 365, 527, 596, 599, 733
PluTI	GGCGCC	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	189
Psp124BI	GAGCTC	2 cut(s)	511, 636
PspFI	CCCAGC	1 cut(s)	824
PspN4I	GGNNCC	3 cut(s)	168, 207, 254
PspPI	GGNCC	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	599
PsuI	RGATCY	3 cut(s)	166, 252, 658
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	2 cut(s)	511, 636
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	189, 561, 663
SatI	GCNGC	6 cut(s)	173, 364, 526, 595, 598, 732
Sau3AI	GATC	5 cut(s)	98, 166, 252, 549, 658
Sau96I	GGNCC	1 cut(s)	605
ScrFI	CCNGG	2 cut(s)	210, 351
SduI	GDGCHC	2 cut(s)	511, 636
SfaNI	GCATC	2 cut(s)	556, 719
SfcI	CTRYAG	2 cut(s)	499, 595
SfoI	GGCGCC	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	176, 190, 557, 665, 692
SsiI	CCGC	4 cut(s)	5, 170, 173, 493
SspDI	GGCGCC	1 cut(s)	205
SstI	GAGCTC	2 cut(s)	511, 636
StyD4I	CCNGG	2 cut(s)	208, 349
StyI	CCWWGG	1 cut(s)	601
TaqI	TCGA	2 cut(s)	97, 217
TasI	AATT	5 cut(s)	176, 190, 557, 665, 692
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	4 cut(s)	94, 219, 299, 755
Tru1I	TTAA	3 cut(s)	189, 561, 663
Tru9I	TTAA	3 cut(s)	189, 561, 663
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	5 cut(s)	363, 525, 594, 597, 731
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	6 cut(s)	27, 122, 281, 365, 419, 464
TspGWI	ACGGA	2 cut(s)	140, 157
TspRI	CASTG	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	3 cut(s)	557, 665, 692
XmnI	GAANNNNTTC	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.