Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1121971 .. 1123289

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGGATGTGGTTGTGAGCAAAACCAACTTGTTTTCATCATGCCATCATCATCAACACATCTCTGTGTTTCCAAAGACTTCAGGGCCTTCGAATCAATCATCGTTGTCATTCTCATCAAAGACGGACTTTCATGGCAAACGGATTGGGCTTCAACAACTTAGACTTAGACGACCCTTTCCCACTGCAAGGGTTCCGCAATTTCAAGCCATTAATTCACAGCTTCAGGCGCCGGGTTTTCGAATCGGTAAAGCTCGTAGATGGTGGGAAAAGGGGATCCAACCCAACATGAAAGAGGTGACGTCAGCACAAGACCTTGTGGATTCCCTCTCAAACGCAGGAGATAAGCTTGTCGTCCTTGATTTCTTCTCTCCCGGTTGTGGTGGCTGCAAAGCTCTTCATCCCAAGATATGTCAATTTGCAGAGATGAACCCAGATGTTCAGTTTCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTCAATGTTCATGTCCTACCCTTCTTCCGCTTCTACAGAGGAGCTCATGGTCGTGTATGCAGCTTTAGCTGTACAAACGCCACGATAAAAAAATTTAAAGATGCGTTAGCCAAGCACAAGCCAGAGCGCTGCAGTCTTGGGCCGACTAAGGGGTTGGAGGAGAAAGAGCTCCTCGCTCTTTCTGCTAATAAAGATCTTAAATTCACCTACACCCCTAAACAAGTTGAATTTGTGCCTGCAAAAGCAGCAGAGGAAATGATTGTGGCAGCACCATCTCGTTCAAACTCAGAATCTCTTCCTCTGCCTTTGACAACATTGAAGTCTGGTCAAATCTCCGAGGAGAGAAACATGGTCAGTGCTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

286

Amino Acids

31.75

Weight (kDa)

9.53

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	110 - 179	1.3e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	3 cut(s)	5, 197, 517
AclWI	GGATC	2 cut(s)	271, 284
AcsI	RAATTY	3 cut(s)	581, 689, 716
AcuI	CTGAAG	3 cut(s)	66, 209, 434
AcyI	GRCGYC	2 cut(s)	230, 302
AfaI	GTAC	1 cut(s)	562
AfeI	AGCGCT	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	189, 380, 638
AgsI	TTSAA	5 cut(s)	155, 206, 716, 771, 808
AluBI	AGCT	8 cut(s)	223, 254, 349, 395, 533, 552, 558, 658
AluI	AGCT	8 cut(s)	223, 254, 349, 395, 533, 552, 558, 658
Alw21I	GWGCWC	2 cut(s)	535, 660
AlwI	GGATC	2 cut(s)	271, 284
Aor51HI	AGCGCT	1 cut(s)	617
AoxI	GGCC	2 cut(s)	86, 629
ApeKI	GCWGC	5 cut(s)	387, 549, 618, 734, 755
ApoI	RAATTY	3 cut(s)	581, 689, 716
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	232, 618
AspS9I	GGNCC	2 cut(s)	86, 629
AsuC2I	CCSGG	2 cut(s)	234, 375
AsuHPI	GGTGA	3 cut(s)	310, 466, 685
AsuII	TTCGAA	2 cut(s)	92, 241
BamHI	GGATCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	535, 660
Bbv12I	GWGCWC	2 cut(s)	535, 660
BbvI	GCAGC	5 cut(s)	374, 561, 605, 746, 767
BccI	CCATC	3 cut(s)	54, 255, 769
BcnI	CCSGG	2 cut(s)	234, 375
BfmI	CTRYAG	2 cut(s)	523, 619
BfoI	RGCGCY	2 cut(s)	233, 619
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	5 cut(s)	388, 550, 619, 735, 756
BlsI	GCNGC	5 cut(s)	389, 551, 620, 736, 757
Bme1390I	CCNGG	2 cut(s)	234, 375
BmgT120I	GGNCC	2 cut(s)	86, 629
BmiI	GGNNCC	3 cut(s)	195, 231, 278
BmrFI	CCNGG	2 cut(s)	234, 375
BmsI	GCATC	1 cut(s)	580
Bpu14I	TTCGAA	2 cut(s)	92, 241
BpuMI	CCSGG	2 cut(s)	234, 375
BsaHI	GRCGYC	2 cut(s)	230, 302
BsaJI	CCNNGG	1 cut(s)	825
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 380, 638
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	2 cut(s)	13, 400
BseLI	CCNNNNNNNGG	3 cut(s)	189, 380, 638
BseMII	CTCAG	1 cut(s)	789
BseRI	GAGGAG	4 cut(s)	543, 650, 662, 842
BseXI	GCAGC	5 cut(s)	374, 561, 605, 746, 767
BseYI	CCCAGC	1 cut(s)	848
BshFI	GGCC	2 cut(s)	88, 631
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	535, 660
BsiSI	CCGG	2 cut(s)	233, 375
BslI	CCNNNNNNNGG	3 cut(s)	189, 380, 638
BsnI	GGCC	2 cut(s)	88, 631
Bsp119I	TTCGAA	2 cut(s)	92, 241
Bsp1286I	GDGCHC	2 cut(s)	535, 660
Bsp1407I	TGTACA	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	276, 682
BspACI	CCGC	3 cut(s)	5, 197, 517
BspANI	GGCC	2 cut(s)	88, 631
BspCNI	CTCAG	1 cut(s)	788
BspLI	GGNNCC	3 cut(s)	195, 231, 278
BspMAI	CTGCAG	1 cut(s)	623
BspPI	GGATC	2 cut(s)	271, 284
BspQI	GCTCTTC	1 cut(s)	402
BspT104I	TTCGAA	2 cut(s)	92, 241
BspT107I	GGYRCC	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	2 cut(s)	276, 682
BssNI	GRCGYC	2 cut(s)	230, 302
Bst6I	CTCTTC	2 cut(s)	402, 789
BstACI	GRCGYC	2 cut(s)	230, 302
BstAUI	TGTACA	1 cut(s)	560
BstBI	TTCGAA	2 cut(s)	92, 241
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	4 cut(s)	161, 167, 636, 775
BstF5I	GGATG	2 cut(s)	13, 400
BstH2I	RGCGCY	2 cut(s)	233, 619
BstHHI	GCGC	2 cut(s)	232, 618
BstKTI	GATC	2 cut(s)	279, 685
BstMBI	GATC	2 cut(s)	276, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 555, 671, 734
BstSCI	CCNGG	2 cut(s)	232, 373
BstSFI	CTRYAG	2 cut(s)	523, 619
BstV1I	GCAGC	5 cut(s)	374, 561, 605, 746, 767
BstX2I	RGATCY	2 cut(s)	276, 682
BstYI	RGATCY	2 cut(s)	276, 682
BsuRI	GGCC	2 cut(s)	88, 631
BtsCI	GGATG	2 cut(s)	13, 400
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	183, 850
Cac8I	GCNNGC	1 cut(s)	726
CfoI	GCGC	2 cut(s)	232, 618
Cfr13I	GGNCC	2 cut(s)	86, 629
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	7 cut(s)	42, 134, 289, 478, 500, 536, 838
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	4 cut(s)	161, 167, 636, 775
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	2 cut(s)	278, 684
DpnII	GATC	2 cut(s)	276, 682
DraI	TTTAAA	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	402, 789
EarI	CTCTTC	2 cut(s)	402, 789
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	533, 658
Eco24I	GRGCYC	2 cut(s)	535, 660
Eco47III	AGCGCT	1 cut(s)	617
Eco53kI	GAGCTC	2 cut(s)	533, 658
Eco57I	CTGAAG	3 cut(s)	66, 209, 434
EcoICRI	GAGCTC	2 cut(s)	533, 658
EcoO109I	RGGNCCY	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	535, 660
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
FaeI	CATG	7 cut(s)	45, 137, 292, 481, 503, 539, 841
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	7 cut(s)	41, 133, 288, 477, 499, 535, 837
Fnu4HI	GCNGC	5 cut(s)	388, 550, 619, 735, 756
FokI	GGATG	2 cut(s)	20, 387
FriOI	GRGCYC	2 cut(s)	535, 660
Fsp4HI	GCNGC	5 cut(s)	388, 550, 619, 735, 756
GlaI	GCGC	2 cut(s)	231, 617
GluI	GCNGC	5 cut(s)	388, 550, 619, 735, 756
GsaI	CCCAGC	1 cut(s)	852
HaeII	RGCGCY	2 cut(s)	233, 619
HaeIII	GGCC	2 cut(s)	88, 631
HapII	CCGG	2 cut(s)	233, 375
HhaI	GCGC	2 cut(s)	232, 618
Hin1I	GRCGYC	2 cut(s)	230, 302
Hin1II	CATG	7 cut(s)	45, 137, 292, 481, 503, 539, 841
Hin6I	GCGC	2 cut(s)	230, 616
HinP1I	GCGC	2 cut(s)	230, 616
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	94, 243, 323, 779
HpaII	CCGG	2 cut(s)	233, 375
HphI	GGTGA	3 cut(s)	310, 466, 685
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	2 cut(s)	778, 826
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	99, 520
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	188, 390, 422, 549, 621, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 555, 671, 734
HpyF3I	CTNAG	4 cut(s)	161, 167, 636, 775
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	2 cut(s)	230, 302
Hsp92II	CATG	7 cut(s)	45, 137, 292, 481, 503, 539, 841
HspAI	GCGC	2 cut(s)	230, 616
KasI	GGCGCC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	276, 682
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	530, 663
Lsp1109I	GCAGC	5 cut(s)	374, 561, 605, 746, 767
LweI	GCATC	1 cut(s)	580
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	278, 684
MboI	GATC	2 cut(s)	276, 682
MboII	GAAGA	5 cut(s)	358, 389, 440, 505, 776
MflI	RGATCY	2 cut(s)	276, 682
MhlI	GDGCHC	2 cut(s)	535, 660
MluCI	AATT	6 cut(s)	200, 214, 416, 581, 689, 716
Mly113I	GGCGCC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	304, 624
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	3 cut(s)	213, 585, 687
MslI	CAYNNNNRTG	2 cut(s)	65, 540
MspI	CCGG	2 cut(s)	233, 375
MspR9I	CCNGG	2 cut(s)	234, 375
MwoI	GCNNNNNNNGC	4 cut(s)	229, 555, 671, 734
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	234, 375
NdeII	GATC	2 cut(s)	276, 682
NlaIII	CATG	7 cut(s)	45, 137, 292, 481, 503, 539, 841
NlaIV	GGNNCC	3 cut(s)	195, 231, 278
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	2 cut(s)	92, 241
PciSI	GCTCTTC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	4 cut(s)	94, 243, 323, 779
PkrI	GCNGC	5 cut(s)	389, 551, 620, 736, 757
PluTI	GGCGCC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	2 cut(s)	535, 660
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	3 cut(s)	195, 231, 278
PspPI	GGNCC	2 cut(s)	86, 629
PstI	CTGCAG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	276, 682
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	2 cut(s)	65, 540
SacI	GAGCTC	2 cut(s)	535, 660
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	213, 585, 687
SatI	GCNGC	5 cut(s)	388, 550, 619, 735, 756
Sau3AI	GATC	2 cut(s)	276, 682
Sau96I	GGNCC	2 cut(s)	86, 629
ScrFI	CCNGG	2 cut(s)	234, 375
SduI	GDGCHC	2 cut(s)	535, 660
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	2 cut(s)	523, 619
SfoI	GGCGCC	1 cut(s)	231
SfuI	TTCGAA	2 cut(s)	92, 241
SmiMI	CAYNNNNRTG	2 cut(s)	65, 540
Sse9I	AATT	6 cut(s)	200, 214, 416, 581, 689, 716
SsiI	CCGC	3 cut(s)	5, 197, 517
SspDI	GGCGCC	1 cut(s)	229
SstI	GAGCTC	2 cut(s)	535, 660
StyD4I	CCNGG	2 cut(s)	232, 373
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	92, 241
TasI	AATT	6 cut(s)	200, 214, 416, 581, 689, 716
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	94, 243, 323, 779
Tru1I	TTAA	3 cut(s)	213, 585, 687
Tru9I	TTAA	3 cut(s)	213, 585, 687
TscAI	CASTG	2 cut(s)	190, 850
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	5 cut(s)	387, 549, 618, 734, 755
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	6 cut(s)	27, 122, 305, 389, 443, 488
TspGWI	ACGGA	2 cut(s)	140, 157
TspRI	CASTG	2 cut(s)	190, 850
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	3 cut(s)	581, 689, 716
XmnI	GAANNNNTTC	1 cut(s)	783
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.