Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

19761176 .. 19763158

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGGAGGTGGTTGTGAGCAAAGCCAATCTGTTCCCGTCGTCATGCCATCATCAAAACATGTCTGTATTTCCCAAGACTTCAGGGTCTTCGTTATCATTCTCACCCAAGACCGACTTTCATGGCAAATCGATTAGGCTTCGACGACCCTTTCCAACTAGAAGCAATCTGCAATTCCGACCCATTAATTCCCAGCTTCAGCAGCCGGGTTTTCGAGTCGGTAAAGCTCGTAAATGGTGGGTGAAGGGGAACCAACCCAACATGAAAGAGGTGACATCAGCACAAGACCTTGTGGATTCCCTGTTAAACGCAGGAGATAAGCTTGTCGTCCTCGATTTCTTCTCCCCTGGTTGTGGTGGCTGCAAAGCCCTTCATCCCAAGATATGTCAATTTGCAGAGATGAACCCAGATGTTCAATTTCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTCAATGTTCATGTCCTTCCCTTCTTCCGCTTCTACAGAGGAGCTCAGGGTCGTGTATGCAGCTTTAGCTGTACAAATGCCACGATAAAAAAATTTAAAGATGCATTAGCCAAGCACAAGCCAGAACGTTGCAGCCTTGGGCCAACTAAAGGGCTGGAGGAGAAAGAGCTCCTTGCGCTCTCCGCTAATAAAGATCTTGAATTCACCTACACCCCTAAACACGTTGAACATGTGTCTGCAAAAGCAGCGGAGGAAATGATTGTGACAGCACCATCTCGTTCAAGCTCAGAGTCTCTTCCTTTGCCTTCGGCAACATTGAAGTCTGGTCAAATCTCCAAGGAGAGGAACACGGTCAGTGCTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

277

Amino Acids

30.68

Weight (kDa)

9.57

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	99 - 175	2.2e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AciI	CCGC	4 cut(s)	5, 490, 645, 710
AclI	AACGTT	1 cut(s)	589
AcsI	RAATTY	2 cut(s)	554, 662
AcuI	CTGAAG	3 cut(s)	66, 182, 407
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	3 cut(s)	353, 611, 804
AflIII	ACRYGT	3 cut(s)	60, 682, 691
AgsI	TTSAA	5 cut(s)	416, 662, 689, 744, 781
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	8 cut(s)	196, 227, 322, 506, 525, 531, 631, 747
AluI	AGCT	8 cut(s)	196, 227, 322, 506, 525, 531, 631, 747
Alw21I	GWGCWC	2 cut(s)	508, 633
Alw26I	GTCTC	1 cut(s)	759
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	5 cut(s)	202, 360, 522, 594, 707
ApoI	RAATTY	2 cut(s)	554, 662
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	640
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	5 cut(s)	96, 253, 283, 439, 658
BanII	GRGCYC	2 cut(s)	508, 633
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	508, 633
BbvI	GCAGC	5 cut(s)	214, 347, 534, 606, 719
BccI	CCATC	2 cut(s)	57, 742
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	496
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	5 cut(s)	203, 361, 523, 595, 708
BlsI	GCNGC	5 cut(s)	204, 362, 524, 596, 709
Bme1390I	CCNGG	2 cut(s)	207, 348
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	207, 348
BmsI	GCATC	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	346, 598, 798
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 611, 804
BseBI	CCWGG	1 cut(s)	348
BseCI	ATCGAT	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	346, 598, 798
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	353, 611, 804
BseMII	CTCAG	2 cut(s)	521, 762
BseRI	GAGGAG	2 cut(s)	516, 635
BseXI	GCAGC	5 cut(s)	214, 347, 534, 606, 719
BseYI	CCCAGC	2 cut(s)	192, 821
BshFI	GGCC	1 cut(s)	604
BshVI	ATCGAT	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	508, 633
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	353, 611, 804
BsmAI	GTCTC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	508, 633
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	1 cut(s)	655
BspACI	CCGC	4 cut(s)	5, 490, 645, 710
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	520, 761
BspDI	ATCGAT	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	533
BssECI	CCNNGG	3 cut(s)	346, 598, 798
BssMI	GATC	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	598, 798
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	1 cut(s)	762
BstAUI	TGTACA	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	507, 748
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 528, 637, 644, 707
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	2 cut(s)	64, 695
BstSCI	CCNGG	2 cut(s)	205, 346
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	5 cut(s)	214, 347, 534, 606, 719
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	604
BsuTUI	ATCGAT	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	823
CfoI	GCGC	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	7 cut(s)	45, 61, 122, 262, 451, 473, 692
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	2 cut(s)	507, 748
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
DraI	TTTAAA	1 cut(s)	559
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	506, 631
Eco130I	CCWWGG	2 cut(s)	598, 798
Eco24I	GRGCYC	2 cut(s)	508, 633
Eco53kI	GAGCTC	2 cut(s)	506, 631
Eco57I	CTGAAG	3 cut(s)	66, 182, 407
EcoICRI	GAGCTC	2 cut(s)	506, 631
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	598, 798
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	2 cut(s)	508, 633
ErhI	CCWWGG	2 cut(s)	598, 798
FaeI	CATG	7 cut(s)	48, 64, 125, 265, 454, 476, 695
FalI	AAGNNNNNCTT	4 cut(s)	101, 133, 618, 650
FatI	CATG	7 cut(s)	44, 60, 121, 261, 450, 472, 691
Fnu4HI	GCNGC	5 cut(s)	203, 361, 523, 595, 708
FokI	GGATG	1 cut(s)	360
FriOI	GRGCYC	2 cut(s)	508, 633
Fsp4HI	GCNGC	5 cut(s)	203, 361, 523, 595, 708
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	5 cut(s)	203, 361, 523, 595, 708
GsaI	CCCAGC	2 cut(s)	196, 825
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	7 cut(s)	48, 64, 125, 265, 454, 476, 695
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	216, 296, 752
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	5 cut(s)	96, 253, 283, 439, 658
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	179, 751
Hpy188III	TCNNGA	1 cut(s)	659
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	2 cut(s)	43, 147
HpyAV	CCTTC	5 cut(s)	238, 380, 488, 493, 777
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	2 cut(s)	589, 684
HpyCH4V	TGCA	7 cut(s)	172, 363, 395, 522, 566, 594, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 528, 637, 644, 707
HpyF3I	CTNAG	2 cut(s)	507, 748
HpySE526I	ACGT	2 cut(s)	589, 684
Hsp92II	CATG	7 cut(s)	48, 64, 125, 265, 454, 476, 695
HspAI	GCGC	1 cut(s)	638
Kzo9I	GATC	1 cut(s)	655
LmnI	GCTCC	2 cut(s)	503, 636
Lsp1109I	GCAGC	5 cut(s)	214, 347, 534, 606, 719
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	2 cut(s)	589, 684
MaeIII	GTNAC	2 cut(s)	271, 724
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MboII	GAAGA	5 cut(s)	81, 331, 413, 478, 749
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	508, 633
MluCI	AATT	6 cut(s)	173, 187, 389, 416, 554, 662
MlyI	GAGTC	2 cut(s)	225, 761
MmeI	TCCRAC	2 cut(s)	179, 202
MnlI	CCTC	8 cut(s)	262, 341, 430, 473, 494, 613, 706, 798
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	3 cut(s)	186, 305, 558
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	207, 348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	5 cut(s)	202, 528, 637, 644, 707
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	7 cut(s)	48, 64, 125, 265, 454, 476, 695
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	271, 724
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	2 cut(s)	64, 695
PciI	ACATGT	2 cut(s)	60, 691
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	204, 362, 524, 596, 709
PleI	GAGTC	2 cut(s)	224, 760
PpsI	GAGTC	2 cut(s)	224, 760
PscI	ACATGT	2 cut(s)	60, 691
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	2 cut(s)	508, 633
Psp1406I	AACGTT	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	2 cut(s)	192, 821
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SacI	GAGCTC	2 cut(s)	508, 633
SaqAI	TTAA	3 cut(s)	186, 305, 558
SatI	GCNGC	5 cut(s)	203, 361, 523, 595, 708
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	2 cut(s)	225, 761
ScrFI	CCNGG	2 cut(s)	207, 348
SduI	GDGCHC	2 cut(s)	508, 633
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	496
Sse9I	AATT	6 cut(s)	173, 187, 389, 416, 554, 662
SsiI	CCGC	4 cut(s)	5, 490, 645, 710
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	2 cut(s)	508, 633
StyD4I	CCNGG	2 cut(s)	205, 346
StyI	CCWWGG	2 cut(s)	598, 798
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	2 cut(s)	592, 687
TaqI	TCGA	4 cut(s)	131, 142, 214, 333
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	6 cut(s)	173, 187, 389, 416, 554, 662
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	186, 305, 558
Tru9I	TTAA	3 cut(s)	186, 305, 558
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	2 cut(s)	271, 724
TseI	GCWGC	5 cut(s)	202, 360, 522, 594, 707
Tsp45I	GTSAC	2 cut(s)	271, 724
TspDTI	ATGAA	5 cut(s)	110, 278, 362, 416, 461
TspRI	CASTG	1 cut(s)	823
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	2 cut(s)	554, 662
XceI	RCATGY	2 cut(s)	64, 695
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.