Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

46876706 .. 46878999

Gene Structure 2294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG369300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAAGAGGTGACGTCAGCACAAGACCTTGTGGATTCCCTCTCAAACGCAGGAGATAAGCTTGTCGTCCTTGATTTCTTCTCTCCCGGTTGTGGTGGCTGCAAGGCTCTTCATCCCAAGATATGCCAGTTCGCTGAGATGAACCCAGATGTTCAGTTTCTTCAGGTGAACTATGAGGAACACAAATCCATGTGTTATAGCCTCAATGTTCATGTCCTACCCTTCTTTCGCTTCTACAGAGGAGCTCATGGTCGTGTATGCAGCTTTAGCTGCACAAACGCCACGATCAAAAAATTTAAAGATGCGTTAGCCAAGCACAAGCCAGAGCGCTGCAGCCTTGGGCCAACGAAGGGGTTGGAGGAGAAAGAGCTCCTCGCACTTTCTGCTAATAAAGATCTTAAATTCACCTACACCCCTAAACAAGTTGAATTTGTGCCTGCAAAAGCAGCAGATGAAATGATTGTGGCAGCACCATCTCGTTCAAACTTGGAATCTCTTCCTCTGCCTTCAACAACATTGAAGTCTGGTCAAATCTCCGAGGAGAGAAACATGGTCAGTGCTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

189

Amino Acids

20.86

Weight (kDa)

8.43

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	14 - 83	5.7e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AcsI	RAATTY	3 cut(s)	293, 401, 428
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	14
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	92, 350
AgsI	TTSAA	4 cut(s)	428, 483, 510, 520
AluBI	AGCT	5 cut(s)	61, 245, 264, 270, 370
AluI	AGCT	5 cut(s)	61, 245, 264, 270, 370
Alw21I	GWGCWC	2 cut(s)	247, 372
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	7 cut(s)	99, 261, 270, 330, 333, 446, 467
ApoI	RAATTY	3 cut(s)	293, 401, 428
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	22, 178, 397
BanII	GRGCYC	2 cut(s)	247, 372
Bbv12I	GWGCWC	2 cut(s)	247, 372
BbvI	GCAGC	7 cut(s)	86, 257, 273, 317, 345, 458, 479
BccI	CCATC	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	87
BfmI	CTRYAG	2 cut(s)	235, 331
BfoI	RGCGCY	1 cut(s)	331
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	7 cut(s)	100, 262, 271, 331, 334, 447, 468
BlsI	GCNGC	7 cut(s)	101, 263, 272, 332, 335, 448, 469
Bme1390I	CCNGG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	337, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 350
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	337, 537
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	92, 350
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	4 cut(s)	255, 362, 374, 554
BseXI	GCAGC	7 cut(s)	86, 257, 273, 317, 345, 458, 479
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	247, 372
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	92, 350
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	247, 372
Bsp143I	GATC	2 cut(s)	285, 394
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	337, 537
BssMI	GATC	2 cut(s)	285, 394
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	337
Bst6I	CTCTTC	2 cut(s)	114, 501
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	288, 397
BstMBI	GATC	2 cut(s)	285, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	267, 270, 383, 446
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	235, 331
BstV1I	GCAGC	7 cut(s)	86, 257, 273, 317, 345, 458, 479
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	341
CviAII	CATG	4 cut(s)	190, 212, 248, 550
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	2 cut(s)	287, 396
DpnII	GATC	2 cut(s)	285, 394
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	114, 501
EarI	CTCTTC	2 cut(s)	114, 501
Ecl136II	GAGCTC	2 cut(s)	245, 370
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	247, 372
Eco47III	AGCGCT	1 cut(s)	329
Eco53kI	GAGCTC	2 cut(s)	245, 370
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	2 cut(s)	245, 370
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	247, 372
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	4 cut(s)	193, 215, 251, 553
FaiI	YATR	8 cut(s)	124, 174, 191, 198, 213, 249, 259, 551
FatI	CATG	4 cut(s)	189, 211, 247, 549
Fnu4HI	GCNGC	7 cut(s)	100, 262, 271, 331, 334, 447, 468
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	2 cut(s)	247, 372
Fsp4HI	GCNGC	7 cut(s)	100, 262, 271, 331, 334, 447, 468
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	7 cut(s)	100, 262, 271, 331, 334, 447, 468
GsaI	CCCAGC	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	193, 215, 251, 553
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	35, 491
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	3 cut(s)	22, 178, 397
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	538
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	232, 343, 516
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	102, 261, 273, 333, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	267, 270, 383, 446
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	193, 215, 251, 553
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	285, 394
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	242, 375
LpnPI	CCDG	9 cut(s)	36, 100, 140, 149, 159, 336, 450, 510, 546
Lsp1109I	GCAGC	7 cut(s)	86, 257, 273, 317, 345, 458, 479
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	287, 396
MboI	GATC	2 cut(s)	285, 394
MboII	GAAGA	4 cut(s)	70, 101, 152, 488
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	247, 372
MluCI	AATT	3 cut(s)	293, 401, 428
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	8 cut(s)	50, 169, 212, 233, 352, 383, 510, 532
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	2 cut(s)	297, 399
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	267, 270, 383, 446
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	285, 394
NlaIII	CATG	4 cut(s)	193, 215, 251, 553
NmuCI	GTSAC	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	35, 491
PkrI	GCNGC	7 cut(s)	101, 263, 272, 332, 335, 448, 469
Psp124BI	GAGCTC	2 cut(s)	247, 372
PspFI	CCCAGC	1 cut(s)	560
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	2 cut(s)	247, 372
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	297, 399
SatI	GCNGC	7 cut(s)	100, 262, 271, 331, 334, 447, 468
Sau3AI	GATC	2 cut(s)	285, 394
Sau96I	GGNCC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	247, 372
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	235, 331
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	293, 401, 428
SstI	GAGCTC	2 cut(s)	247, 372
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	337
TaiI	ACGT	1 cut(s)	17
TasI	AATT	3 cut(s)	293, 401, 428
TfiI	GAWTC	2 cut(s)	35, 491
Tru1I	TTAA	2 cut(s)	297, 399
Tru9I	TTAA	2 cut(s)	297, 399
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	7 cut(s)	99, 261, 270, 330, 333, 446, 467
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	17, 101, 155, 200, 468
TspRI	CASTG	1 cut(s)	562
XapI	RAATTY	3 cut(s)	293, 401, 428
XmnI	GAANNNNTTC	1 cut(s)	495
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.