Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

225144 .. 226494

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAGAAGTTTTGAGCAAAACCAGTCTGTTGTCGTCCTGGCATCATCATCATCAAAACAAAAAAAGCAGCATCTCCGTTTTCCCAAAGAGTTGTAATTACAATAAATCAGGTTCTTTCTCTTGCTCTTTCAAACTGAATCCGGACATTTCATCACTATCCTTGTCCACAAAGAGTGATTTTCACGGGAAAAGGATTGCTTTTCAAGCCACCGGCATCAGGGGGAATTCCCAATCCCACGCTTCTTCTGCCGTTTATTCCCAGCAGCATTCTGGATTTCGGATTGGGAAAGCTGCGAAATGGTGGGAGAAGGGGAACCAGCCCAACATGAAAGAGGTGTCATCTGCAGAGGACCTAGTGGAATCCCTTTCAAACGCCGGGGATAAGCTGGTGATCGTTGATTTCTTCTCTCCTGGCTGTGGTGGCTGCAAAGCTCTTCATCCCAAGATATGTCAGCTGGCAGAGATGAACCCGGATGTCCAATTCCTTCAGGTGAACTACGAGGAACACAAGTCCATGTGTTACAGTCTTAATGTTCATGTCCTCCCCTTCTTCCGCTTTTACCGAGGTGCTCATGGTCGCCTTTGCAGCTTCAGCTGCACCAACGCCACGATCAAGAAGTTTAGAGATGCATTAGCCAAGCACAAGCCAGAGCGGTGCAGCCTTGGGCCGACAAAAGGGCTGGAGGAGAAAGAGCTCCTCGCTCTTGCTGCCAACAAAGATCTCTCATTTACCTACACGCCTAAACCAACTGAAGATGTGGCTGCCAAGGAGGAAGTGATTGTGGCTGAAGAGGCACCATCTCGTCTTCCTCTTCCGTCGGCAACCTCAAAGTCTGCTCAAGTGGTCACTGCCTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

288

Amino Acids

31.67

Weight (kDa)

9.13

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	655
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	2 cut(s)	556, 655
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	4 cut(s)	473, 577, 774, 810
AfiI	CCNNNNNNNGG	3 cut(s)	219, 419, 677
AgsI	TTSAA	3 cut(s)	133, 206, 372
AjnI	CCWGG	3 cut(s)	38, 412, 854
AluBI	AGCT	7 cut(s)	293, 388, 434, 457, 591, 597, 697
AluI	AGCT	7 cut(s)	293, 388, 434, 457, 591, 597, 697
Alw21I	GWGCWC	2 cut(s)	574, 699
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	9 cut(s)	69, 265, 293, 426, 588, 597, 660, 710, 764
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	352, 668
AsuC2I	CCSGG	2 cut(s)	379, 473
AsuHPI	GGTGA	2 cut(s)	403, 505
AvaII	GGWCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	2 cut(s)	574, 699
BbvI	GCAGC	9 cut(s)	81, 277, 280, 413, 584, 600, 672, 697, 751
BccI	CCATC	1 cut(s)	808
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	3 cut(s)	40, 414, 856
BcnI	CCSGG	2 cut(s)	379, 473
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	9 cut(s)	70, 266, 294, 427, 589, 598, 661, 711, 765
BlsI	GCNGC	9 cut(s)	71, 267, 295, 428, 590, 599, 662, 712, 766
Bme1390I	CCNGG	5 cut(s)	40, 379, 414, 473, 856
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	352, 668
BmiI	GGNNCC	2 cut(s)	317, 798
BmrFI	CCNGG	5 cut(s)	40, 379, 414, 473, 856
BmsI	GCATC	4 cut(s)	52, 81, 225, 619
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	2 cut(s)	379, 473
BsaJI	CCNNGG	4 cut(s)	378, 565, 664, 768
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 419, 677
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	142
BseBI	CCWGG	3 cut(s)	40, 414, 856
BseDI	CCNNGG	4 cut(s)	378, 565, 664, 768
BseGI	GGATG	2 cut(s)	439, 481
BseLI	CCNNNNNNNGG	3 cut(s)	219, 419, 677
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	689, 701
BseXI	GCAGC	9 cut(s)	81, 277, 280, 413, 584, 600, 672, 697, 751
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	2 cut(s)	583, 679
BshFI	GGCC	1 cut(s)	670
BshNI	GGYRCC	1 cut(s)	796
BsiHKAI	GWGCWC	2 cut(s)	574, 699
BsiSI	CCGG	4 cut(s)	143, 213, 378, 473
BslI	CCNNNNNNNGG	3 cut(s)	219, 419, 677
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	574, 699
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	393, 612, 721
BspACI	CCGC	2 cut(s)	556, 655
BspANI	GGCC	1 cut(s)	670
BspEI	TCCGGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	317, 798
BspMAI	CTGCAG	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	796
BsrBI	CCGCTC	1 cut(s)	655
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	4 cut(s)	378, 565, 664, 768
BssMI	GATC	3 cut(s)	393, 612, 721
BssT1I	CCWWGG	2 cut(s)	664, 768
Bst2UI	CCWGG	3 cut(s)	40, 414, 856
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	3 cut(s)	441, 786, 819
BstC8I	GCNNGC	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	439, 481
BstKTI	GATC	3 cut(s)	396, 615, 724
BstMBI	GATC	3 cut(s)	393, 612, 721
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 248, 423, 588, 594, 597, 710, 794
BstNI	CCWGG	3 cut(s)	40, 414, 856
BstSCI	CCNGG	5 cut(s)	38, 377, 412, 471, 854
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	9 cut(s)	81, 277, 280, 413, 584, 600, 672, 697, 751
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	439, 481
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	352, 668
CviAII	CATG	4 cut(s)	328, 517, 539, 575
DpnI	GATC	3 cut(s)	395, 614, 723
DpnII	GATC	3 cut(s)	393, 612, 721
Eam1104I	CTCTTC	3 cut(s)	441, 786, 819
EarI	CTCTTC	3 cut(s)	441, 786, 819
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	664, 768
Eco24I	GRGCYC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	4 cut(s)	473, 577, 774, 810
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	38, 412, 854
EcoT14I	CCWWGG	2 cut(s)	664, 768
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	664, 768
FaeI	CATG	4 cut(s)	331, 520, 542, 578
FaiI	YATR	5 cut(s)	329, 451, 518, 540, 576
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FatI	CATG	4 cut(s)	327, 516, 538, 574
Fnu4HI	GCNGC	9 cut(s)	70, 266, 294, 427, 589, 598, 661, 711, 765
FokI	GGATG	2 cut(s)	426, 488
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	9 cut(s)	70, 266, 294, 427, 589, 598, 661, 711, 765
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	9 cut(s)	70, 266, 294, 427, 589, 598, 661, 711, 765
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	4 cut(s)	143, 213, 378, 473
Hin1II	CATG	4 cut(s)	331, 520, 542, 578
HinfI	GANTC	2 cut(s)	139, 362
HpaII	CCGG	4 cut(s)	143, 213, 378, 473
HphI	GGTGA	2 cut(s)	403, 505
Hpy166II	GTNNAC	2 cut(s)	168, 496
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	3 cut(s)	143, 273, 616
Hpy8I	GTNNAC	2 cut(s)	168, 496
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	3 cut(s)	304, 497, 559
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	6 cut(s)	347, 429, 588, 600, 632, 660
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 248, 423, 588, 594, 597, 710, 794
Hsp92II	CATG	4 cut(s)	331, 520, 542, 578
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	393, 612, 721
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	702
Lsp1109I	GCAGC	9 cut(s)	81, 277, 280, 413, 584, 600, 672, 697, 751
LweI	GCATC	4 cut(s)	52, 81, 225, 619
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	521, 847
MalI	GATC	3 cut(s)	395, 614, 723
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	3 cut(s)	393, 612, 721
MboII	GAAGA	8 cut(s)	237, 397, 428, 544, 767, 800, 803, 806
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	2 cut(s)	574, 699
MluCI	AATT	3 cut(s)	97, 226, 482
Mph1103I	ATGCAT	1 cut(s)	634
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	457, 597
MspI	CCGG	4 cut(s)	143, 213, 378, 473
MspR9I	CCNGG	5 cut(s)	40, 379, 414, 473, 856
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	3 cut(s)	40, 414, 856
MwoI	GCNNNNNNNGC	8 cut(s)	206, 248, 423, 588, 594, 597, 710, 794
NciI	CCSGG	2 cut(s)	379, 473
NdeII	GATC	3 cut(s)	393, 612, 721
NlaIII	CATG	4 cut(s)	331, 520, 542, 578
NlaIV	GGNNCC	2 cut(s)	317, 798
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	139, 362
PkrI	GCNGC	9 cut(s)	71, 267, 295, 428, 590, 599, 662, 712, 766
PpuMI	RGGWCCY	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	3 cut(s)	38, 412, 854
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	3 cut(s)	38, 412, 854
PspN4I	GGNNCC	2 cut(s)	317, 798
PspPI	GGNCC	2 cut(s)	352, 668
PspPPI	RGGWCCY	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	2 cut(s)	457, 597
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	9 cut(s)	70, 266, 294, 427, 589, 598, 661, 711, 765
Sau3AI	GATC	3 cut(s)	393, 612, 721
Sau96I	GGNCC	2 cut(s)	352, 668
ScrFI	CCNGG	5 cut(s)	40, 379, 414, 473, 856
SduI	GDGCHC	2 cut(s)	574, 699
SfaNI	GCATC	4 cut(s)	52, 81, 225, 619
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
Sse9I	AATT	3 cut(s)	97, 226, 482
SsiI	CCGC	2 cut(s)	556, 655
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	5 cut(s)	38, 377, 412, 471, 854
StyI	CCWWGG	2 cut(s)	664, 768
TaaI	ACNGT	1 cut(s)	527
TasI	AATT	3 cut(s)	97, 226, 482
TfiI	GAWTC	2 cut(s)	139, 362
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	9 cut(s)	69, 265, 293, 426, 588, 597, 660, 710, 764
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	5 cut(s)	141, 344, 428, 482, 527
TspGWI	ACGGA	2 cut(s)	67, 807
TspRI	CASTG	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.